View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_3 (Length: 629)
Name: NF18757_low_3
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 52 - 620
Target Start/End: Complemental strand, 35204887 - 35204311
Alignment:
| Q |
52 |
gatatatacgactgtaatatatggttcactagtatatatatttagaccttttggcaacacttaactctacnnnnnnnncttttcaaaatgttaccaatat |
151 |
Q |
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| T |
35204887 |
gatatatatgacagtaatatatggttcactagtatat----ttagaccttttggcaacacttaactctacttttttttcttttcaaaatgttaccaatat |
35204792 |
T |
|
| Q |
152 |
ctatcttaaaaccatcctttatgaacatttaaatgttacctcttgctactaactttaattagccgcaaataattgtagtagttaatcctaagctaattaa |
251 |
Q |
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| T |
35204791 |
ctatcttaaaaccatcctttatgaacatttaaatgttacctcttgctactaacttta----gccgcaaataattgtagtagttaatcctaagctaattaa |
35204696 |
T |
|
| Q |
252 |
ctatactcactatagtggttttatctacactaaaactggttattagtgtttttataaacttatatccttctatatttcgcatatctttgcaatgaaacat |
351 |
Q |
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| T |
35204695 |
ctatactcactatagtggttttatctacactaaaactggttattagtgtttttataaacttataaccttctatatttcgcatatctttgcaatgaaacat |
35204596 |
T |
|
| Q |
352 |
ggtatctttgtctttggtttgcactttactattatattcgccatctttcataaggatttatttctcattctggatgagcttattgagacaaacacaactt |
451 |
Q |
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| T |
35204595 |
ggtatctttgtctttggtttgcactttacaattatattcgtcatctttcataaggatttatttctcattctggatgagtttattgagacaaacacaactt |
35204496 |
T |
|
| Q |
452 |
tgtaaatgtttttgtttcttgtttgtttcccttctatttagacccctactcttttaactgaat----------------atatgtttttgtgtactccca |
535 |
Q |
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| T |
35204495 |
tgtaaatgtttttgtttcttgtttgtttcccttctatttagacccctactcttttaactgaatattagtattatactcaatatgtttttgtgtactccca |
35204396 |
T |
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| Q |
536 |
ttttgtaaatattgttgctttctacagtgtatcttaattgtgaccgtcccggagtttgtctggatgttgctgttaatgatgatgt |
620 |
Q |
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| T |
35204395 |
ttttgtaaatattgttgctttctacagtgtatcttaattgtgaccgtcccggagtttgtctggatgttgctgttaatgatgatgt |
35204311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35204973 - 35204891
Alignment:
| Q |
1 |
ccatttgagtattatgtgaatatttttgtagttgcacaaaatgcattgaatgatatatacgactgtaatatatggttcactag |
83 |
Q |
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| T |
35204973 |
ccatttgagtattatgtgaatatttttgtagttgcacaaaatgcattgaatgatatatacgactgtaatatatggttcactag |
35204891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 22471864 - 22471824
Alignment:
| Q |
211 |
tagccgcaaataattgtagtagttaatcctaagctaattaa |
251 |
Q |
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| T |
22471864 |
tagctgcaaataattgttgtagttaatactaagctaattaa |
22471824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 304 - 445
Target Start/End: Original strand, 32474818 - 32474959
Alignment:
| Q |
304 |
tataaacttatatccttctatatttcgcatatctttgcaatgaaacatggtatctttgtctttggtttgcactttactattatattcgccatctttcata |
403 |
Q |
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||||| |||||||||||| |||||| | |||| |||||||||||||||| | | ||||| || | ||||||||| || |||||||| |||||||| || |
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| T |
32474818 |
tataagcttatatccttccatatttagtatatatttgcaatgaaacatgctctgtttgtgttagatttgcacttaacaattatatttctcatctttccta |
32474917 |
T |
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| Q |
404 |
aggatttatttctcattctggatgagcttattgagacaaaca |
445 |
Q |
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| T |
32474918 |
caaatttatttctttttctggatgaaattatggagacaaaca |
32474959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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