View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_30 (Length: 377)
Name: NF18757_low_30
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 14256317 - 14255962
Alignment:
| Q |
14 |
actattgcctcagcagatggacatgagtagctatagaaacccacctgcaaagatgctgaagccaatgaagaaatagatagaattatcaaaaccaagctag |
113 |
Q |
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| T |
14256317 |
actattgcctcagcagatggacatgagtagctatagaaacccacctgcagagatgctgaagccaatgaagaaatagatagaattatcaaaaccaagctag |
14256218 |
T |
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| Q |
114 |
aaaccatttgatgcatgtatggtatactatccattgttgtatgttggtgaagagaacttgtgttgaagtaattgtatttataggctaggaaatttgtgct |
213 |
Q |
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| T |
14256217 |
aaaccatttgatgcatgtatggtatactatccattgttgtatgttggtgaagagaacttgtgttgaagtaattgtatttataggctaggaaatttgtgct |
14256118 |
T |
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| Q |
214 |
tccttttgaaggtgcat--ttggtcctgaaatagttgaagttttctaagcattgaacacttctattttggttcaacttggtttctttattttaggataaa |
311 |
Q |
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| T |
14256117 |
tccttttgaaggtgcattattggtcctgaaatagttgaagttttctaagcattgaacacttctattttggttcaacttggtttctttatttttggataaa |
14256018 |
T |
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| Q |
312 |
tagagtgatgacatactagaattgagtgtagtgggaatttttctattctacctatg |
367 |
Q |
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| T |
14256017 |
tagagtgatgacatactagaattgagtgtagtgggaatttttttattctacctatg |
14255962 |
T |
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