View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_low_34 (Length: 356)

Name: NF18757_low_34
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_low_34
NF18757_low_34
[»] scaffold0386 (3 HSPs)
scaffold0386 (122-356)||(1000-1234)
scaffold0386 (18-70)||(687-739)
scaffold0386 (19-77)||(1279-1337)
[»] chr4 (4 HSPs)
chr4 (122-356)||(33878719-33878953)
chr4 (19-77)||(33878616-33878674)
chr4 (18-66)||(33879209-33879257)
chr4 (195-234)||(46673679-46673718)
[»] chr5 (6 HSPs)
chr5 (122-356)||(13869339-13869573)
chr5 (122-278)||(27640973-27641129)
chr5 (19-77)||(13869232-13869290)
chr5 (19-77)||(27640867-27640925)
chr5 (18-70)||(13869827-13869879)
chr5 (18-70)||(27641431-27641483)
[»] chr7 (4 HSPs)
chr7 (122-356)||(29735433-29735661)
chr7 (18-70)||(29735112-29735164)
chr7 (30-77)||(29735710-29735759)
chr7 (195-232)||(8720808-8720845)
[»] chr8 (4 HSPs)
chr8 (122-298)||(38460526-38460702)
chr8 (18-70)||(38460882-38460934)
chr8 (19-65)||(38460423-38460469)
chr8 (195-234)||(44428119-44428158)
[»] chr3 (3 HSPs)
chr3 (122-356)||(49851146-49851369)
chr3 (19-77)||(49851417-49851475)
chr3 (21-70)||(49850833-49850882)


Alignment Details
Target: scaffold0386 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 122 - 356
Target Start/End: Complemental strand, 1234 - 1000
Alignment:
Q  122 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234 gagttttctttctcttctctttgcttaaacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 1135  T
Q  222 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1134 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgg 1035  T
Q  322 gtcaaattatattaaaatagttagttttaataact 356  Q
    |||||||||||||||||||||||||||||||||||    
T  1034 gtcaaattatattaaaatagttagttttaataact 1000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 687 - 739
Alignment:
Q  18 acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 70  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  687 acatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 1337 - 1279
Alignment:
Q  19 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 77  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  1337 catagaaacgtacataacatgtgacacttacaaacatccaataaaatcatgacaggtca 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 122 - 356
Target Start/End: Original strand, 33878719 - 33878953
Alignment:
Q  122 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878719 gagttttctttctcttctctttgcttaaacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 33878818  T
Q  222 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgg 321  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878819 actactcattgcaacaccataattaacggatccaaatcatgcggagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgg 33878918  T
Q  322 gtcaaattatattaaaatagttagttttaataact 356  Q
    |||||||||||||||||||||||||||||||||||    
T  33878919 gtcaaattatattaaaatagttagttttaataact 33878953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 33878616 - 33878674
Alignment:
Q  19 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33878616 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 33878674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 33879257 - 33879209
Alignment:
Q  18 acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatc 66  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33879257 acatggaaacgtacataacatgtggcacttacaaacatccaatgaaatc 33879209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 46673679 - 46673718
Alignment:
Q  195 aattgtgaagatggttatggctcatcgactactcattgca 234  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  46673679 aattgtgaagatggttatgactcatccactactcattgca 46673718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 122 - 356
Target Start/End: Original strand, 13869339 - 13869573
Alignment:
Q  122 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 221  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||||     
T  13869339 gagttttctttctcttctctttgcttaaaccggtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatggttatgtctcatcc 13869438  T
Q  222 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgg 321  Q
    ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13869439 actgctcattgtaacaccataattaacggatccaaatcatgtagagattgtttctaaatcatgctgtattgggtgttattgcaatccaatcgagcaatgg 13869538  T
Q  322 gtcaaattatattaaaatagttagttttaataact 356  Q
    |||||||| ||||||||||||||||||||||||||    
T  13869539 gtcaaattctattaaaatagttagttttaataact 13869573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 27640973 - 27641129
Alignment:
Q  122 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 221  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||||     
T  27640973 gagttttctttctcttctctttgcttaaactggtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatggttatgtctcatcc 27641072  T
Q  222 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaa 278  Q
    ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  27641073 actgctcattgtaacaccataattaacggatccaaatcatgtagagattgtttctaa 27641129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 13869232 - 13869290
Alignment:
Q  19 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 77  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13869232 catagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 13869290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 27640867 - 27640925
Alignment:
Q  19 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 77  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27640867 catagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 27640925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13869879 - 13869827
Alignment:
Q  18 acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 70  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13869879 acatagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatga 13869827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 27641483 - 27641431
Alignment:
Q  18 acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 70  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  27641483 acatagaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatga 27641431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 122 - 356
Target Start/End: Complemental strand, 29735661 - 29735433
Alignment:
Q  122 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| | |||||||||||||||||||||||||||||||| ||||||     
T  29735661 gagttttctttctcttctctttgcttaaaccggtggaataattctaaaaatgccaaattcctcttgttgtttaaattgtgaagatggttatgtctcatc- 29735563  T
Q  222 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgg 321  Q
         |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29735562 -----tcattgcaacaccataattaacggatccaaatcatgtagagattgtttctaaaccatactgtattgggtgttattgcaatccaatcgagcaatgg 29735468  T
Q  322 gtcaaattatattaaaatagttagttttaataact 356  Q
    || ||||| ||||||||||||||||||||||||||    
T  29735467 gttaaattctattaaaatagttagttttaataact 29735433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 29735112 - 29735164
Alignment:
Q  18 acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 70  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  29735112 acatagaaacttacataacatgtggcacttacaaacatccaataaaattatga 29735164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 29735759 - 29735710
Alignment:
Q  30 acataacatgtggcacttacaaac--atccaatgaaatcatgataggtca 77  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  29735759 acataacatgtggcacttacaaacatatccaatgaaatcatgacaggtca 29735710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 8720808 - 8720845
Alignment:
Q  195 aattgtgaagatggttatggctcatcgactactcattg 232  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  8720808 aattgtgaagatggttatgtctcatccactactcattg 8720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 122 - 298
Target Start/End: Original strand, 38460526 - 38460702
Alignment:
Q  122 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 221  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||||||||||||||||||||||| ||||||     
T  38460526 gagttttctttctcttctctttgcttaaacctgtggaataagtctagaaactccaaatatctcttgttgtttaaattgtgaagatggttatgtctcatcc 38460625  T
Q  222 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgtt 298  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38460626 actgctcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgttgtattgggtgtt 38460702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 38460934 - 38460882
Alignment:
Q  18 acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460934 acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 38460882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 38460423 - 38460469
Alignment:
Q  19 catagaaacgtacataacatgtggcacttacaaacatccaatgaaat 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38460423 catagaaacgtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 44428158 - 44428119
Alignment:
Q  195 aattgtgaagatggttatggctcatcgactactcattgca 234  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  44428158 aattgtgaagatggttatgtctcatccactactcattgca 44428119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 122 - 356
Target Start/End: Complemental strand, 49851369 - 49851146
Alignment:
Q  122 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcg 221  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||     
T  49851369 gagttttctttcttttctctttgcttaaactggtggaataattctagaaacgccaaacttcccttgttgtttaaattgtgaagatggttatgtctcatcc 49851270  T
Q  222 actactcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtg---ttattgcaatccaatcgagcaa 318  Q
    ||| || |||| ||||||||||||              ||| |||||||||||||||| ||||||||||||||||   ||||||||||||||| ||||||    
T  49851269 actgcttattgtaacaccataatt--------------atgtagagattgtttctaaatcatgctgtattgggtgttattattgcaatccaattgagcaa 49851184  T
Q  319 tgggtcaaattatattaaaatagttagttttaataact 356  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  49851183 tgggtcaaattctattaaaatagttagttttaataact 49851146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 49851475 - 49851417
Alignment:
Q  19 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 77  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  49851475 catagaaacatacataacatgtggcacttacaaacatccaatgaaatcataacaggtca 49851417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 49850833 - 49850882
Alignment:
Q  21 tagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 70  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49850833 tagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatga 49850882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University