View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18757_low_35 (Length: 355)
Name: NF18757_low_35
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_35 |
 | |
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| [»] scaffold0386 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 687 - 1024
Alignment:
| Q |
18 |
acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaaatagaaataga |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||| |
|
|
| T |
687 |
acatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatttttttttatttaaaaaaaatgaaaatagaaacaga |
786 |
T |
|
| Q |
118 |
accattgtcatccttttgcaacttggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtt |
217 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
787 |
accatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtt |
886 |
T |
|
| Q |
218 |
tgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
887 |
tgtgaaaatctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaa |
986 |
T |
|
| Q |
318 |
tttccaaatgcaaagttattaaaactaactattttaat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
987 |
tttccaaatgcaaagttattaaaactaactattttaat |
1024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 1337 - 1284
Alignment:
| Q |
19 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
1337 |
catagaaacgtacataacatgtgacacttacaaacatccaataaaatcatgaca |
1284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 33879257 - 33878929
Alignment:
| Q |
18 |
acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaaatagaaataga |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |
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|
| T |
33879257 |
acatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattatataaaaaaa---------aatgaaaatagaaacaga |
33879167 |
T |
|
| Q |
118 |
accattgtcatccttttgcaacttggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtt |
217 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33879166 |
accatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtt |
33879067 |
T |
|
| Q |
218 |
tgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33879066 |
tgtgaaaatctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaa |
33878967 |
T |
|
| Q |
318 |
tttccaaatgcaaagttattaaaactaactattttaat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33878966 |
tttccaaatgcaaagttattaaaactaactattttaat |
33878929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 33878616 - 33878669
Alignment:
| Q |
19 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33878616 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgaca |
33878669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 27641483 - 27641145
Alignment:
| Q |
18 |
acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnn-tgaaaatagaaatag |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||| || |
|
|
| T |
27641483 |
acatagaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaaatgaaaatagaaacag |
27641384 |
T |
|
| Q |
117 |
aaccattgtcatccttttgcaacttggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgt |
216 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
27641383 |
aaccatcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctattagtgt |
27641284 |
T |
|
| Q |
217 |
ttgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttga |
316 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
27641283 |
ttctgaaaatctaggaacatgttcatcaaccttaaaaaaacattcacccaccatatgtcaactcatggaagagaaaatttcaacctttcaagagatctga |
27641184 |
T |
|
| Q |
317 |
atttccaaatgcaaagttattaaaactaactattttaat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27641183 |
atttccaaatgcaaagttattaaaactaactattttaat |
27641145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 13869879 - 13869549
Alignment:
| Q |
18 |
acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaaatagaaataga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||| ||| |
|
|
| T |
13869879 |
acatagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaatgaaaatagaaacaga |
13869780 |
T |
|
| Q |
118 |
accattgtcatccttttgcaacttggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtt |
217 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
13869779 |
accatcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctattagtgtt |
13869680 |
T |
|
| Q |
218 |
tgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaa |
317 |
Q |
| |
|
| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
13869679 |
tctgaaaatctaggaacat-------aaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacctttcaagagatctgaa |
13869587 |
T |
|
| Q |
318 |
tttccaaatgcaaagttattaaaactaactattttaat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13869586 |
tttccaaatgcaaagttattaaaactaactattttaat |
13869549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 13869232 - 13869285
Alignment:
| Q |
19 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca |
72 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13869232 |
catagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgaca |
13869285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 27640867 - 27640920
Alignment:
| Q |
19 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca |
72 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27640867 |
catagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgaca |
27640920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 49850833 - 49851170
Alignment:
| Q |
21 |
tagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaaatagaaatagaacc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||||| | |||| |
|
|
| T |
49850833 |
tagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattactttttttaattaaaaaaaaatgaaaatagaaacataacc |
49850932 |
T |
|
| Q |
121 |
attgtcatccttttgcaacttggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtttgt |
220 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
49850933 |
atcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtatttct |
49851032 |
T |
|
| Q |
221 |
gaaaatctaggaacatgttc---atcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaa |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
49851033 |
gaaaatctaggaacatgttcaatatcaaccttaaaaaaacattcggccatcatatctcaactcatggaagagaaaatttcaaccttttaagagatctgaa |
49851132 |
T |
|
| Q |
318 |
tttccaaatgcaaagttattaaaactaactattttaat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49851133 |
tttccaaatgcaaagttattaaaactaactattttaat |
49851170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 49851475 - 49851428
Alignment:
| Q |
19 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaatc |
66 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49851475 |
catagaaacatacataacatgtggcacttacaaacatccaatgaaatc |
49851428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 29735112 - 29735457
Alignment:
| Q |
18 |
acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnnt--gaaaatagaaata |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| | ||||||||||| | |
|
|
| T |
29735112 |
acatagaaacttacataacatgtggcacttacaaacatccaataaaattatgacatatcattattttttttaatttaaaaaaaatatgaaaatagaaaca |
29735211 |
T |
|
| Q |
116 |
gaaccattgtcatccttttgcaacttggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtg |
215 |
Q |
| |
|
||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29735212 |
gaaccatcgtcattcttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgtttaatatttctctaatagtg |
29735311 |
T |
|
| Q |
216 |
tttgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttg |
315 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |
|
|
| T |
29735312 |
tttatgaaaatctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaaccttttaagagatctg |
29735411 |
T |
|
| Q |
316 |
aatttccaaatgc------aaagttattaaaactaactattttaat |
355 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29735412 |
aatttccaaatgcatacaaaaagttattaaaactaactattttaat |
29735457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 29735759 - 29735715
Alignment:
| Q |
30 |
acataacatgtggcacttacaaac--atccaatgaaatcgtgaca |
72 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
29735759 |
acataacatgtggcacttacaaacatatccaatgaaatcatgaca |
29735715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 38460934 - 38460745
Alignment:
| Q |
18 |
acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnn--tgaaaatagaaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||| | |
|
|
| T |
38460934 |
acatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatttatttttaatttaaaaaaaaatgaaaatagaaaca |
38460835 |
T |
|
| Q |
116 |
gaaccattgtcatccttttgcaacttggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttc |
205 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38460834 |
gaaccatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactaaatctatgttcttgttttatatttc |
38460745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 38460423 - 38460469
Alignment:
| Q |
19 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaat |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38460423 |
catagaaacgtacataacatgtggcacttacaaacatccaatgaaat |
38460469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 38460749 - 38460700
Alignment:
| Q |
293 |
atttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaac |
342 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38460749 |
atttcaacctttcaagagatttgaatttccaaatgcaaagttattaaaac |
38460700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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