View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_36 (Length: 354)
Name: NF18757_low_36
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 38125224 - 38125566
Alignment:
| Q |
1 |
caacaatcccatgttcaagctaccatactttgtgccaaagccattaaaattcaactcaaagtaaggagtggtggccatgactttgaaggtatctcatatg |
100 |
Q |
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| T |
38125224 |
caacaatcccatgttcaagctaccatactttgtgccaaagccattaaaattcaactcaaagtaaggagtggtggccatgactttgaaggtatctcatatg |
38125323 |
T |
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| Q |
101 |
tctctaaccaacccttcattattcttgacatgtttcagttcaggaacatcactgttgacatacaaaatgaggttgctgtggttcagtctggtgctatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38125324 |
tctctaaccaacccttcattattcttgacatgtttcagttcaggaacatcactgttgacatacaaaatgaggttgctgtggttcagtctggtgctatact |
38125423 |
T |
|
| Q |
201 |
tggtgaggtttattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcacttgagtggtgga |
300 |
Q |
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| T |
38125424 |
tggtgaggtttattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcacttgagtggtgga |
38125523 |
T |
|
| Q |
301 |
gggtatggtaacatgatgagaaaatttgggttgtctattgata |
343 |
Q |
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| T |
38125524 |
gggtatggtaacatgatgagaaaatttgggttgtctattgata |
38125566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 211 - 343
Target Start/End: Original strand, 38129387 - 38129519
Alignment:
| Q |
211 |
tattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcacttgagtggtggagggtatggta |
310 |
Q |
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| T |
38129387 |
tattataggatatgggagaaaagtaaagttcatggctttcctgccggcgtttgtccaactgttggtgttggtggccatttgagtggaggagggtatggta |
38129486 |
T |
|
| Q |
311 |
acatgatgagaaaatttgggttgtctattgata |
343 |
Q |
| |
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| T |
38129487 |
acatgatgagaaaattcgggttatctattgata |
38129519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 38090579 - 38090732
Alignment:
| Q |
190 |
ggtgctatacttggtgaggtttattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcact |
289 |
Q |
| |
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||||||| | ||||||| |||||||||||||| | |||| |||| |||||||| ||||| |||||||||||| |||||||||||||||||| || | |
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| T |
38090579 |
ggtgctacaattggtgaagtttattataggatttctgagattagtagtgttcatggttttccagctggggtttgtcctactgttggtgttggtggacatt |
38090678 |
T |
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| Q |
290 |
tgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgata |
343 |
Q |
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| T |
38090679 |
ttagtggtggggggtatggtaacatgatgagaaaatttgggttatctgttgata |
38090732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 11821097 - 11821251
Alignment:
| Q |
189 |
tggtgctatacttggtgaggtttattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcac |
288 |
Q |
| |
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|||||||| ||||||||| ||||||||||| || | ||||||||||| |||||||| ||||||||||| || ||| ||||| |||||||||||||| |
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| T |
11821097 |
tggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctggtgtgtgtccaactgtcggtgttggtggtcat |
11821196 |
T |
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| Q |
289 |
ttgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgata |
343 |
Q |
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|| ||||||||||||||||||| ||| || |||||| ||| || ||| |||||| |
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| T |
11821197 |
ttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgata |
11821251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 49 - 343
Target Start/End: Complemental strand, 11835407 - 11835113
Alignment:
| Q |
49 |
attcaactcaaagtaaggagtggtggccatgactttgaaggtatctcatatgtctctaaccaacccttcattattcttgacatgtttcagttcaggaaca |
148 |
Q |
| |
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|||||| ||||| |||| || ||||| ||||| | || ||||| ||||| |||||||||||||||| || || ||||| |||||| | | || | | |
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| T |
11835407 |
attcaaatcaaaataagaagcggtggacatgattacgagggtatttcatacatctctaaccaaccctttatcatacttgatatgtttaatctaagaacaa |
11835308 |
T |
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| Q |
149 |
tcactgttgacatacaaaatgaggttgctgtggttcagtctggtgctatacttggtgaggtttattataggatatgggagaagagtaaagttcatggctt |
248 |
Q |
| |
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||| |||||| ||| ||||||| |||||| |||| ||||||||| ||||||||| ||||| || || || | || ||||||||||||||||| || |
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| T |
11835307 |
tcaatgttgatataaaaaatgaagttgcttatattcaagctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatt |
11835208 |
T |
|
| Q |
249 |
tcctgctggggtttgtattactgttggtgttggtggtcacttgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgata |
343 |
Q |
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||||||||| || ||| ||||| ||||||||||||||| | |||||||||||||||||| ||| ||||||||| ||| || ||| |||||| |
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| T |
11835207 |
tcctgctggtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatctgttgata |
11835113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 11933668 - 11933761
Alignment:
| Q |
232 |
agtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcacttgagtggtggagggtatggtaacatgatgagaaaat |
325 |
Q |
| |
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|||||||||||||| ||||| || || |||||| ||| ||||||||||| || || || |||||||| || |||||||||||||||||||||| |
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| T |
11933668 |
agtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaat |
11933761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 11946889 - 11946982
Alignment:
| Q |
232 |
agtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtcacttgagtggtggagggtatggtaacatgatgagaaaat |
325 |
Q |
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|||||||||||||| ||||| || || |||||| ||| ||||||||||| || || || |||||||| || |||||||||||||||||||||| |
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| T |
11946889 |
agtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaat |
11946982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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