View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_37 (Length: 352)
Name: NF18757_low_37
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 46729977 - 46729659
Alignment:
| Q |
1 |
cctggcgaggaacctgaccgtcaacacagtaacaaatccacaaccaacaactcactacgactatagcaagcatgagtgacctggaagcaacttgtaactc |
100 |
Q |
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| T |
46729977 |
cctggcgaggaacctgaccatcaacacagtaacaaatccacaaccaacaactcactacgactatagcaagcatgagtggcctggaagcaacttgtaactc |
46729878 |
T |
|
| Q |
101 |
ctaaaagcaccaccgcatagtcaatgctctttcgagcaaccaggaaaaccattacgagacttaaaacagcccaaatcaatccaatccaccatagaagctt |
200 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46729877 |
ctaaaagaaccaccacatagtcaatgctctttcgagcaaccaggaaaaccattacgagacttaaaacaacccaaatcaatccaatccaccatagaagctt |
46729778 |
T |
|
| Q |
201 |
ccaacgaatacaataaacaaacataactaaagtggtccacgacggtggattgagctagcatgttggcggcaacttggatatccttaaatggggttaacgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
46729777 |
ccaacgaatacaataaacaaacataactaaagtggtccacgacggtggattgagctagcatgttgtcggcaacttggatatccttgaatggggttaacgt |
46729678 |
T |
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| Q |
301 |
acgagacccaagcatcaaa |
319 |
Q |
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||||||||||||||||||| |
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| T |
46729677 |
acgagacccaagcatcaaa |
46729659 |
T |
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