View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_4 (Length: 609)
Name: NF18757_low_4
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Original strand, 1609913 - 1610499
Alignment:
| Q |
18 |
agttgtggttagtagacagaactttcagacaatacgtaactgcaggtggagggcgattggatggtaatttggagacttgcagtgcagccaaaggtgagaa |
117 |
Q |
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| T |
1609913 |
agttgtggttagtagacagaactttcagacaatacgtaactgcaggtggagggtgattggatggtaatttggagacttgcagtgcagccaaaggtgagaa |
1610012 |
T |
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| Q |
118 |
attttgtctggaaagtgaaagtggccgaaaattgtctactaacacgtgtaaaactaactgataaagaaatgcatgatgggactaaacaagtcataaatag |
217 |
Q |
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| T |
1610013 |
attttgtctggaaagtgaaagtggccgaaaattgtctactaacacgtgtaaaactaactaataaagaaatgcatgatgggactaaacaagtcataaatag |
1610112 |
T |
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| Q |
218 |
aatagtgtataaccataatgcaggtgacacctatccttttcaaaaaa-gacttnnnnnnncaagtcataccttgttatctccatttcttaggtattccaa |
316 |
Q |
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| T |
1610113 |
aatagtgtataaccataatgcaggtgacacctatccttttcaaaaaaagacttaaaaaaacaagtcataccttgttatctccatttcttaggtattccaa |
1610212 |
T |
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| Q |
317 |
acaatgttgaacaacatgatttccattattgtcttttatgagaatcaagaatcctggttcaagagctgatacaactaatgaaacttgttgcttagttttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1610213 |
acaatgttgaacaacatgatttccattattgtcttttatgagaatcaagaatcctggttcaagagctgatacgactaatgaaacttgttgcttagttttg |
1610312 |
T |
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| Q |
417 |
agagtctcgatcagcttctgcacaacacgagtgttgtgggaaggagagaacaatgaggtcaagttcagcattagataataagtacattatttcatattaa |
516 |
Q |
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| T |
1610313 |
agagtctcgatcagcttctgcacaacacgagtgctgtgggaaggagagaacaatgaggtcaagttcaacattagataataagtacattatttcatattag |
1610412 |
T |
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| Q |
517 |
ttataaaatagttgcatgactacccgtgagtatttaacgagattctgacaagctgccccggctcctggataaccatcagtattatct |
603 |
Q |
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| T |
1610413 |
ttataaaatagttgcatgactacccgtgagtatttaacgagattctgacaagctgccccggctcctggataaccatcagtatgatct |
1610499 |
T |
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