View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_41 (Length: 332)
Name: NF18757_low_41
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 3745221 - 3744913
Alignment:
| Q |
9 |
gaagaatatcaagaaaaagtgtgagaatggatttcaggttgatgggtttagatgctccagtgctacacgctttgcaccagatgatggatctttcagatga |
108 |
Q |
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| T |
3745221 |
gaagaaaatcaagaaaaagtgtgagaatggatttcaggttgatgggtttggatgctccagtgctacacgctcttcaccaaatgatggacctttcagatga |
3745122 |
T |
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| Q |
109 |
caatgtggagaagacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcag |
208 |
Q |
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| T |
3745121 |
caatatggagaagacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcag |
3745022 |
T |
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| Q |
209 |
aattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagagga |
308 |
Q |
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| T |
3745021 |
aattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagagga |
3744922 |
T |
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| Q |
309 |
agagggaag |
317 |
Q |
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| T |
3744921 |
agagggaag |
3744913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 48303219 - 48303114
Alignment:
| Q |
212 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
311 |
Q |
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| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
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| Q |
312 |
gggaag |
317 |
Q |
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| T |
48303119 |
gagaag |
48303114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 10462162 - 10462267
Alignment:
| Q |
212 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
311 |
Q |
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|||| ||| |||| ||| ||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| ||| |||||||||| |
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| T |
10462162 |
tcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaaga |
10462261 |
T |
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| Q |
312 |
gggaag |
317 |
Q |
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| T |
10462262 |
gggaag |
10462267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 10539977 - 10539857
Alignment:
| Q |
197 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
296 |
Q |
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|||||| |||| || || |||||||||| || || |||| ||| ||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| |
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| T |
10539977 |
aaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataa |
10539878 |
T |
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| Q |
297 |
gcggagagaggaagagggaag |
317 |
Q |
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||| |||||||||||||||| |
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| T |
10539877 |
ccggcgagaggaagagggaag |
10539857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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