View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_45 (Length: 305)
Name: NF18757_low_45
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 295
Target Start/End: Original strand, 39692936 - 39693203
Alignment:
| Q |
28 |
ctttctatgttgcttcaggagctgcattaactggagttatttacattgaagataatttgggttgggctataggatttggtatttgtgttgtggctgcttt |
127 |
Q |
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| T |
39692936 |
ctttctatgttgcttcaggagctgcattaactggaattatttacattgaagataatttgggttgggctacaggatttggtatctgtgttgtggctgcttt |
39693035 |
T |
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| Q |
128 |
tgttggtgtggttgnnnnnnngtcgggttatcgattttatcgagccgaaaagcttcaaggaagtgcggttttggatttgggacgtgtttttgttgcatct |
227 |
Q |
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| T |
39693036 |
tgttggtgtggttatttttttgtcgggttatcgattttatcgagccgaaaagcttcaaggaagtgcggttttggatttgggacgtgtttttgttgcatct |
39693135 |
T |
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| Q |
228 |
gttcgtaagtggaagtgtaagctctcatctagagttgaggattactatactaccaatggtgatgatgt |
295 |
Q |
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| T |
39693136 |
gttcgtaagtggaagtgtaagctctcatctagagttgaggattactatactaccaatggtgatgatgt |
39693203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 275
Target Start/End: Original strand, 39702905 - 39703156
Alignment:
| Q |
24 |
ttcactttctatgttgcttcaggagctgcattaactggagttatttacattgaagataatttgggttgggctataggatttggtatttgtgttgtggctg |
123 |
Q |
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| T |
39702905 |
ttcactttctatgttgcttctggagctgcattaactggagttatttacattgaagataatttgggttggtctttaggatttggtatctgtgctgtggcta |
39703004 |
T |
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| Q |
124 |
cttttgttggtgtggttgnnnnnnngtcgggttatcgattttatcgagccgaaaagcttcaaggaagtgcggttttggatttgggacgtgtttttgttgc |
223 |
Q |
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| T |
39703005 |
cttttgttggtgtggttgtttttttgtcgggttatcgattttatcgagccgaaaagcctcaaggaagtgcggttttggatttgggacgtatttttgttgc |
39703104 |
T |
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| Q |
224 |
atctgttcgtaagtggaagtgtaagctctcatctagagttgaggattactat |
275 |
Q |
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| T |
39703105 |
atctgttcggaagtggaagtgtaagctctcatctagagttgaggattactat |
39703156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 39930399 - 39930143
Alignment:
| Q |
19 |
acttcttcactttctatgttgcttcaggagctgcattaactggagttatttacattgaagataatttgggttgggctataggatttggtatttgtgttgt |
118 |
Q |
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| T |
39930399 |
acttcttcactttctatgttgcttcaggagctgcattaactggaattatttacattgaagataatttgggttgggctataggatttggtatttgtgctgt |
39930300 |
T |
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| Q |
119 |
ggctgcttttgttggtgtggttgnnnnnnngtcgggttatcgattttatcgagccgaaaagcttcaaggaagtgcggttttggatttgggacgtgttttt |
218 |
Q |
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| T |
39930299 |
ggctgcttttgttggtgtggttgtttttgtgttaggttatcgattttatcgggccgaaaagccacagggaagtgcgattttggacttgggacgtgttttt |
39930200 |
T |
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| Q |
219 |
gttgcatctgttcgtaagtggaagtgtaagctctcatctagagttgaggattactat |
275 |
Q |
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| T |
39930199 |
gttgcatctgctcgtaagtggaggtgtaagctttcatccagagctgaggattactat |
39930143 |
T |
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