View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_46 (Length: 298)
Name: NF18757_low_46
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 28387481 - 28387204
Alignment:
| Q |
1 |
ataaataaaatgaaattttttaaatatgtaatttattctatgaatcaattctttctaaaaagcaattgagatgcacaaagtaaaactaaatcatatagtc |
100 |
Q |
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| T |
28387481 |
ataaataaaatgaaattttttaaatatgtaatttattctatgaatcaattctttctaaaaaccaattgagatgcacaaagtaaaactaaatcatatagtc |
28387382 |
T |
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| Q |
101 |
tatacaaagtgccaacaagaagttgaacacaatcaagttttagacgatggtcgttctaaacggatataatcatacataactccttgaaacggactaagag |
200 |
Q |
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| T |
28387381 |
tatacaaagtgccaacaagaagttgaacacaatcaagttttagacgatggtcgttctaaacggatataatcatacataactccttgaaacggactaagag |
28387282 |
T |
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| Q |
201 |
cttttgattgtctcagatagacgatgttctttcctttcacaagaagatcacttggcacatcaatgctgaataaccaat |
278 |
Q |
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| T |
28387281 |
cttttgattgtctcagatagacgatgttctttcctttcacaagaagatcactaggcacgtcaatgctgaacaaccaat |
28387204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 28408444 - 28408594
Alignment:
| Q |
117 |
aagaagttgaacacaatcaagttttagacgatggtcgttctaaacggatataatcatacataactccttgaaacggactaagagcttttgattgtctcag |
216 |
Q |
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| T |
28408444 |
aagaagttgaacacaatcaaatt---gccggtggtcgttctaaacgaatataatcgtacataactccttggaaaggagtatcggctttggactgcctcag |
28408540 |
T |
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| Q |
217 |
atagacgatgttctttcctttcacaagaagatcacttggcacatcaatgctgaa |
270 |
Q |
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| T |
28408541 |
gtagatgatgttctttcctttcacaagaaggttactagacacattaatgctgaa |
28408594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 280
Target Start/End: Complemental strand, 28396104 - 28395972
Alignment:
| Q |
148 |
tggtcgttctaaacggatataatcatacataactccttgaaacggactaagagcttttgattgtctcagatagacgatgttctttcctttcacaagaaga |
247 |
Q |
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|||| ||||||||||||| |||||||||||||||||||| || ||| || || || | || | ||||| | ||||||||||||||||| ||||||| |
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| T |
28396104 |
tggttgttctaaacggatgtaatcatacataactccttggaaaggagtatcggcgttggtctgcgttagatatatgatgttctttcctttcaaaagaaga |
28396005 |
T |
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| Q |
248 |
tcacttggcacatcaatgctgaataaccaatac |
280 |
Q |
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| T |
28396004 |
ttacttggcacatcaatactgaacaacctatac |
28395972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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