View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_49 (Length: 291)
Name: NF18757_low_49
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3800335 - 3800200
Alignment:
| Q |
1 |
ataagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgc |
100 |
Q |
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| T |
3800335 |
ataagatcttatctacgccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgc |
3800236 |
T |
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| Q |
101 |
aatgccaaaacgagatcatggaatatttgatgttga |
136 |
Q |
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| T |
3800235 |
aatgccaaaacgagatcatgaaatatttgatgttga |
3800200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 3789771 - 3789888
Alignment:
| Q |
3 |
aagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaa |
102 |
Q |
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| T |
3789771 |
aagatcttatctacgccgcgccatgggaagtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaa |
3789870 |
T |
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| Q |
103 |
tgccaaaacgagatcatg |
120 |
Q |
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||| |||| ||||||||| |
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| T |
3789871 |
tgcgaaaaggagatcatg |
3789888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 44523853 - 44523990
Alignment:
| Q |
138 |
ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttac |
237 |
Q |
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| T |
44523853 |
ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttac |
44523952 |
T |
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| Q |
238 |
acttacatatatatgttgaataaccaacggtaataaac |
275 |
Q |
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| T |
44523953 |
acttacatatatatgtcgaataaccaacggtaataaac |
44523990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 41322264 - 41322130
Alignment:
| Q |
141 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacact |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||| |
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| T |
41322264 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactgatatctctaaagtacatgttacact |
41322165 |
T |
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| Q |
241 |
tacatatatatgttgaataaccaacggtaataaac |
275 |
Q |
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| T |
41322164 |
tacatatatatgttgaataaccaacggtaataaac |
41322130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 37726240 - 37726150
Alignment:
| Q |
139 |
tctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagta |
229 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || || |||||||| |
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| T |
37726240 |
tctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta |
37726150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 12503202 - 12503300
Alignment:
| Q |
140 |
ctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttaca |
238 |
Q |
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||||||||| |||||||| |||||| ||||||||| || ||| |||||||||| |||||||||||||||||||||||| || ||| ||||||||||||| |
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| T |
12503202 |
ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatgttaca |
12503300 |
T |
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