View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_5 (Length: 595)
Name: NF18757_low_5
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 14 - 579
Target Start/End: Complemental strand, 3566271 - 3565706
Alignment:
| Q |
14 |
ttctgagctttcttttggtgttttgatactttcatctgaaaaccatcactatcaatgacttgtaaggtgtttgcttcaggaacttttctaaggtttgtaa |
113 |
Q |
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| T |
3566271 |
ttctgagctttcttttggtgttttgatactttcatatgaaaaccatcactatcaatgacttgtaaggtgtttgctacaggaacttttctaaggtttgtaa |
3566172 |
T |
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| Q |
114 |
aaaacgtgtatctgcatctttattttccacaatgttggcccatgagtttttaagaaagtctatatccttctggactatgtcaggagtggacaaaggttgt |
213 |
Q |
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| T |
3566171 |
aaaacgtgtatctgcatctttattttccacaatgttggcccatgagtttttaagaaagtctatatccttctggactatgtcaggagtggacaaaggttgt |
3566072 |
T |
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| Q |
214 |
gtaatctacttttcatcctcatcttcttcattatggtcttgtgttgcatcgacaaaggaaccctacgtgctagtatcatcttgcgcattcacatctaaga |
313 |
Q |
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| T |
3566071 |
gtaatctgctcttcatcctcatcttcttcattatggtcttgtgttgcatcgacaaaggaaccttacgtgctagtatcatcttgcgcattcacatctaagt |
3565972 |
T |
|
| Q |
314 |
ctccaacataattaacttgaatgttggcctttatttccacttctatttgcaaatcttgggcctttaacagttcagcaggtgaagtgtttttgtcaggagt |
413 |
Q |
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| T |
3565971 |
ctccaacagaattaacttgaatgttggcatttatttccacttctatttgcaaatcttgggcctttaagagttcagcaggtgaagtgtttttgtcaggagt |
3565872 |
T |
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| Q |
414 |
cttcacattagactgcacctcctcttgttccttatcattcttatcatttccaggtaattcctcaacattgataacttctttctcaacattgattacttcc |
513 |
Q |
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| T |
3565871 |
cttcacattagactgcacctcctcttgttccttatcattcttatcatttccagccaattcctcaacattgataacttctttctcgacattgattacttcc |
3565772 |
T |
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| Q |
514 |
ttacctttacccaatattctttgttctgatctcttcttcagggtgccatcttttgcaataatcaac |
579 |
Q |
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| T |
3565771 |
ttacctttactcagtattctctgttctgatctcttcttcagggtgccatcttttgcaataatcaac |
3565706 |
T |
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