View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18757_low_50 (Length: 291)
Name: NF18757_low_50
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_50 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 33995423 - 33995708
Alignment:
| Q |
3 |
gtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgccaattttgagagccaccaacaatgatcttcttaggttgttgttctgtc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33995423 |
gtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgccaattttgagagccaccaacaatgatcttcttaggttgttgttctgtc |
33995522 |
T |
|
| Q |
103 |
ttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaggagggccagtctttgtttgccacagtaactgtaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33995523 |
ttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaggagggccagtctttgtttgccacagtaactgtaa |
33995622 |
T |
|
| Q |
203 |
acattgaagcgcttattataactagtaataaggtgaggacatgaacaatgtttgtggtgaaggccatattgtcttagatgattctt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33995623 |
acattgaagcgcttattataactagtaataaggtgaggacatgaacaatgtttgtggtgaaggccatattgtcttagatgattctt |
33995708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 34008004 - 34008291
Alignment:
| Q |
1 |
aggtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgccaattttgagagccaccaacaatgatcttcttaggttgttgttctg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
34008004 |
aggtaaaaaggaccattcttaatagcccaatcagagtagttatagccaaagtgccaattttgagagccaccaacaatgatgttcttaggttgttgttcag |
34008103 |
T |
|
| Q |
101 |
tcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaggagggccagtctttgtttgccacagtaactgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
34008104 |
tcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgt |
34008203 |
T |
|
| Q |
201 |
aaacattgaagcgcttattataactagtaataaggtgaggacatgaacaatgtttgtggtgaaggccatattgtcttagatgattctt |
288 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
34008204 |
aaacattgaagtggttattataactagtaataaggtgaggacatgaacaatgtttgtggtgaaggccatattgttttatatgattctt |
34008291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 34000114 - 34000379
Alignment:
| Q |
1 |
aggtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgccaattttgagagccaccaacaatgatcttcttaggttgttgttctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34000114 |
aggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgccaattttgagagccaccaacaatgatcttcttaggttgttgttctg |
34000213 |
T |
|
| Q |
101 |
tcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaggagggccagtctttgtttgccacagtaactgt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
34000214 |
tcttatttatttgacgatgatggtttccaaatctggaccaccaatcagtatagttgaaattgccaaaagagggccagtctttgtttgcaacagtaactgt |
34000313 |
T |
|
| Q |
201 |
aaacattgaagcgcttattataactagtaataaggtgaggacatgaacaatgtttgtggtgaaggccat |
269 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
34000314 |
aaacattgaagcggttattattactag---taaggtgaggacatgaacaatgttggtggtggaggccat |
34000379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34003539 - 34003749
Alignment:
| Q |
1 |
aggtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgccaattttgagagccaccaacaatgatcttcttaggttgttgttctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
34003539 |
aggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgccaattttgagagccaccaacaatgatgttcttaggttgttgttcag |
34003638 |
T |
|
| Q |
101 |
tcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaggagggccagtctttgtttgccacagtaactgt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
34003639 |
tcttatttatttgatgatgatgatttccaaatctggaccaccaatcagtgtagttaaaattgccaaaagagggccagtctttgtttgccatagtaaccgt |
34003738 |
T |
|
| Q |
201 |
aaacattgaag |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
34003739 |
aaacattgaag |
34003749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 33993388 - 33993476
Alignment:
| Q |
1 |
aggtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgccaattttgagagccaccaacaatgatcttcttagg |
89 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993388 |
aggtaaaaaggaccattcttaatagctcaatcagaatagttgtagccaaagtgccaattttgagagccaccaacaatgatcttcttagg |
33993476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University