View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_51 (Length: 280)
Name: NF18757_low_51
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_51 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 38921491 - 38921231
Alignment:
| Q |
19 |
catcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccnnnnnnnngcatatgttctttatacaaaccaaaaacgagt |
118 |
Q |
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| T |
38921491 |
catcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccaaaaaaa-gcatatgttctttatacaaaccaacaacgagt |
38921393 |
T |
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| Q |
119 |
gaagaataacatataaaaacaaggtttaaattcatttcataacacactaaatcggatatcaatattatcattgttgatgtttgttctaataatgatctat |
218 |
Q |
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| T |
38921392 |
gaagaataacatataaaaacaaggtttaaattcatttcttaacacactaaatcggatatcaatattatcattttttatgtttgttctaataatgatctat |
38921293 |
T |
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| Q |
219 |
ctaaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatagacatgacgaacc |
280 |
Q |
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| T |
38921292 |
ctaaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatagacatgaagaacc |
38921231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 5140664 - 5140905
Alignment:
| Q |
20 |
atcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccnnnnnnnngcatatgttctttatacaaaccaaaaacgagtg |
119 |
Q |
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| T |
5140664 |
atcacataaactatacacaaaatgcatcaaataatgaacatacaacatttggtaaacctagcaaat--cagttgtcttttacacagaccaactacgagtg |
5140761 |
T |
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| Q |
120 |
aagaataacatataaaaa--caaggtttaaattcatttcataacacactaaatcggatatcaatattatcattgttgatgtttgttctaataatgatcta |
217 |
Q |
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| T |
5140762 |
aagaatatcatataaaaaaacaagttttaaactcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgatcta |
5140861 |
T |
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| Q |
218 |
tctaaccaaaaccaccacacaatacacaaatgaatgaatttata |
261 |
Q |
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| T |
5140862 |
tctaaccaaaacaaccatacaatccacaaatgaatgaatttata |
5140905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 10545345 - 10545302
Alignment:
| Q |
226 |
aaaccaccacacaatacacaaatgaatgaatttatacgtataga |
269 |
Q |
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| T |
10545345 |
aaaccaccacacaatacacaaatgaatgaatttgtatgtataga |
10545302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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