View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_low_53 (Length: 270)

Name: NF18757_low_53
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_low_53
NF18757_low_53
[»] chr6 (2 HSPs)
chr6 (1-270)||(20592188-20592458)
chr6 (2-89)||(19314340-19314427)
[»] chr2 (2 HSPs)
chr2 (1-252)||(817207-817459)
chr2 (19-270)||(31323728-31323987)
[»] chr5 (1 HSPs)
chr5 (1-270)||(22160603-22160873)
[»] chr4 (4 HSPs)
chr4 (4-270)||(34611469-34611736)
chr4 (1-175)||(30666303-30666478)
chr4 (197-270)||(30666234-30666307)
chr4 (35-82)||(35268371-35268418)
[»] chr1 (3 HSPs)
chr1 (53-270)||(24181385-24181601)
chr1 (1-255)||(47056430-47056685)
chr1 (3-191)||(47065571-47065760)
[»] chr3 (2 HSPs)
chr3 (193-269)||(9187905-9187981)
chr3 (26-85)||(9188090-9188149)
[»] chr8 (2 HSPs)
chr8 (4-154)||(16064-16209)
chr8 (103-157)||(16330-16384)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 20592188 - 20592458
Alignment:
Q  1 tgatttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagc-atatgtagtgc 99  Q
    ||||||||||||||||| |||||||||| |||| |||| |||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  20592188 tgatttctcctgaaagaaccttatctctcacaaagtgatagtcgatctctatgtgcttggttctttcatggaaaactggattggaagctatatgtagtgc 20592287  T
Q  100 atcttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgtcttatccatgtgagttcacaagttgctgctgcc 199  Q
      |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||| |||||||    
T  20592288 tgcttgattgtcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgccttagccacgtgaattcacaagttgatgctgcc 20592387  T
Q  200 ataacacgatattcggcttctgcactagaccttgcaacaatgttttgtttcttacttcgccatgagatcaa 270  Q
    ||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || | ||||||||||||    
T  20592388 atagcacgatattcggcttctgcactagaccttgcaactatgttctgtttcttgctcctccatgagatcaa 20592458  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 19314427 - 19314340
Alignment:
Q  2 gatttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagca 89  Q
    ||||||| ||||||||  || ||||||| ||| ||||||||| |||||||||||||||||||||||| | |||| |||||||||||||    
T  19314427 gatttcttctgaaagaatctaatctcttgcaaagtgacagtcgatctctatgtgcttagttctttcaagaaaaaatgggttggaagca 19314340  T

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Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 817207 - 817459
Alignment:
Q  1 tgatttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagc-atatgtagtgc 99  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||| | ||| |||| |||||||||||    
T  817207 tgatttctcctgaaagaaccttatctcttacaaagtggcagtcgatctctatgtgcttggttctttcatggaaaactagattgaaagctatatgtagtgc 817306  T
Q  100 atcttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgtcttatccatgtgagttcacaagttgctgctgcc 199  Q
      |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||    
T  817307 tgcttgattgtcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgccttagccacgtgaattcacaagttgctgctgcc 817406  T
Q  200 ataacacgatattcggcttctgcactagaccttgcaacaatgttttgtttctt 252  Q
    ||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  817407 atagcacgatattcggcttctgcactagaccttgcaactatgttctgtttctt 817459  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 31323987 - 31323728
Alignment:
Q  19 ccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagca-tatgtagtgcatcttggttatcacatat 117  Q
    |||| ||||||| || ||| |||||||| |||| || |||  |||| |||||||  ||||| ||||||||| |||| |||||| |  |||||||| | ||    
T  31323987 ccttgtctcttaaaaagtggcagtcaatgtctacgttcttccttctctcatggagtactggattggaagcaatatgaagtgcagccaggttatcagaaat 31323888  T
Q  118 tagcttcattgccttgacatctcctaatttgagttg-------ttggagtaattgtcttatccatgtgagttcacaagttgctgctgccataacacgata 210  Q
    ||| ||||||||||||| ||||| ||| || |||||        | |||||||||||||| |||||| |||||||||| || |||| ||||| || ||||    
T  31323887 tagtttcattgccttgatatctcttaactttagttgcaagagcctagagtaattgtcttagccatgtaagttcacaagatgttgctaccatagcaagata 31323788  T
Q  211 ttcggcttctgcactagaccttgcaacaatgttttgtttcttacttcgccatgagatcaa 270  Q
     || | ||||||||| ||  ||| ||| |||| ||| ||||| || ||| |||| |||||    
T  31323787 ctctgattctgcactcgaagttgaaactatgtattgcttcttgctccgcgatgatatcaa 31323728  T

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Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 22160603 - 22160873
Alignment:
Q  1 tgatttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagc-atatgtagtgc 99  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  22160603 tgatttctcttgaaagaaccttatctcttacaaagtgacagtcgatctctatgtgcttggttctttcatggaaaactggattggaagctatatgtagtgc 22160702  T
Q  100 atcttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgtcttatccatgtgagttcacaagttgctgctgcc 199  Q
      || | || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||| | |||||    
T  22160703 tgctcgattgtcacatattagcttcattgccttgacatctccaaatttgagttgttggagtaattgccttagccacgtgagttcacaagttgttactgcc 22160802  T
Q  200 ataacacgatattcggcttctgcactagaccttgcaacaatgttttgtttcttacttcgccatgagatcaa 270  Q
    ||| ||||||||||||||||| |||||||||||||||| || || |||||||| || | ||||||||||||    
T  22160803 atagcacgatattcggcttctacactagaccttgcaactatattctgtttcttgctcctccatgagatcaa 22160873  T

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Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 34611736 - 34611469
Alignment:
Q  4 tttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagca-tatgtagtgcatc 102  Q
    |||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||| |||| |||||| |    
T  34611736 tttctcctgaaagaactttatctcttacaaagtgacagtcgatctctatgtgcttagttctttcatgaaaaaccgggttggaggcaatatgcagtgcagc 34611637  T
Q  103 ttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgtcttatccatgtgagttcacaagttgctgctgccata 202  Q
    |||||| ||| | ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |    
T  34611636 ttggttgtcagagattagtttcattaccttgacgtctcctaatttgagttgttggagtaattgtcttagccatgtgagttcacaagttgttgctgccaca 34611537  T
Q  203 acacgatattcggcttctgcactagaccttgcaacaatgttttgtttcttacttcgccatgagatcaa 270  Q
     ||| |  ||| ||||||||||||||||||||||| ||||| |||||||| ||  |||||||||||||    
T  34611536 tcacaactttctgcttctgcactagaccttgcaactatgttctgtttcttgctctgccatgagatcaa 34611469  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 30666478 - 30666303
Alignment:
Q  1 tgatttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagc-atatgtagtgc 99  Q
    |||||||| |||||||  ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  30666478 tgatttcttctgaaagtaccttatctcttacaaagtgacagtcgatctctatgtgcttagttctttcatggaaaactgggttggaagcgatatgtagtgt 30666379  T
Q  100 atcttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgtcttatccat 175  Q
    | ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  30666378 agcttggttgtcacatattagattcattgccttgacatctcctaatttgagatgttggagtaattgtcttagccat 30666303  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 30666307 - 30666234
Alignment:
Q  197 gccataacacgatattcggcttctgcactagaccttgcaacaatgttttgtttcttacttcgccatgagatcaa 270  Q
    |||||| |||||||||| ||||| |||||||||||||||||  ||||||||||||| || ||||||||||||||    
T  30666307 gccatagcacgatattcagcttcagcactagaccttgcaactttgttttgtttcttgctccgccatgagatcaa 30666234  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 35268371 - 35268418
Alignment:
Q  35 gtgacagtcaatctctatgtgcttagttctttcatggaaaactgggtt 82  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  35268371 gtgacagtcaatctctaagtgctttgttctttcatgaaaaactgggtt 35268418  T

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Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 53 - 270
Target Start/End: Original strand, 24181385 - 24181601
Alignment:
Q  53 gtgcttagttctttcatggaaaactgggttggaagc-atatgtagtgcatcttggttatcacatattagcttcattgccttgacatctcctaatttgagt 151  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||   |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  24181385 gtgcttagttctttcatggaaaattgggttggaagcgatatgtagtgctatttggttgtcacatattagtttcattgccttgacatctcctaatttgagt 24181484  T
Q  152 tgttggagtaattgtcttatccatgtgagttcacaagttgctgctgccataacacgatattcggcttctgcactagaccttgcaacaatgttttgtttct 251  Q
    ||||||||||| ||||||| |||||||||||||||| |||||  ||||||| ||| ||||| | |||||||| ||| ||||||||| ||||| |||||||    
T  24181485 tgttggagtaa-tgtcttagccatgtgagttcacaatttgctattgccatagcacaatatttgacttctgca-taggccttgcaactatgttctgtttct 24181582  T
Q  252 tacttcgccatgagatcaa 270  Q
    | || ||||||||||||||    
T  24181583 tgctccgccatgagatcaa 24181601  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 47056685 - 47056430
Alignment:
Q  1 tgatttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagcata-tgtagtgc 99  Q
    ||||||||||||||| | | ||||| ||||||| ||  ||||| ||||||||    ||||||||| |||| || ||| ||||||| ||| | |||||||     
T  47056685 tgatttctcctgaaaaaacattatcccttacaaagtctcagtccatctctatccatttagttcttgcatgaaagactaggttggatgcaaaatgtagtgt 47056586  T
Q  100 atcttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgtcttatccatgtgagttcacaagttgctgctgcc 199  Q
    | ||| ||| ||||||||||| |||| | ||||||| ||||||||||| || ||| |||||| ||||||||  || |||||||||||||||| |||||||    
T  47056585 agcttcgttgtcacatattagtttcaataccttgacgtctcctaattttagctgtaggagtatttgtcttaatcacgtgagttcacaagttgatgctgcc 47056486  T
Q  200 ataacacgatattcggcttctgcactagaccttgcaacaatgttttgtttcttact 255  Q
    |||| ||||||||| |||||||||||||||||| |||| ||||| | |||||||||    
T  47056485 ataatacgatattctgcttctgcactagacctttcaactatgttctatttcttact 47056430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 47065760 - 47065571
Alignment:
Q  3 atttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagcatatgtagtgcat- 101  Q
    ||||||| |||||||||| |||||| ||||| |||||| |||| |||||||||||||| ||||||||| || ||| |||||||  || |||||  ||||     
T  47065760 atttctcttgaaagagccatatctcgtacaaagtgacattcaagctctatgtgcttagctctttcatgaaagactaggttggataca-atgtatagcata 47065662  T
Q  102 -cttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgtcttatccatgtgagttcacaagttg 191  Q
      ||| || |||||||| || ||||||||||  || |||||||||| ||| ||||||||||||||||||| | |  |||||||||||||||    
T  47065661 gtttgattgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactacatgagttcacaagttg 47065571  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 9187981 - 9187905
Alignment:
Q  193 tgctgccataacacgatattcggcttctgcactagaccttgcaacaatgttttgtttcttacttcgccatgagatca 269  Q
    |||||||||| |||||||||| ||||||||||||||   ||||||  ||||||||||||| |||| |||||||||||    
T  9187981 tgctgccatagcacgatattcagcttctgcactagatagtgcaaccctgttttgtttcttgcttctccatgagatca 9187905  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 9188149 - 9188090
Alignment:
Q  26 tcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttgga 85  Q
    |||||||  |||||| || |||||||||||||| |||| ||||||||||||||| |||||    
T  9188149 tcttacatagtgacaatctatctctatgtgcttggttcgttcatggaaaactggattgga 9188090  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 16064 - 16209
Alignment:
Q  4 tttctcctgaaagagccttatctcttacaatgtgacagtcaatctctatgtgcttagttctttcatggaaaactgggttggaagc-atatgtagtgcatc 102  Q
    |||||||||||||| | |||||||| |||| ||  |||   |||| |||| || |||||||||||||  ||||||||||| |||| ||||||||     |    
T  16064 tttctcctgaaagaactttatctctcacaaagtagcagatgatctatatgagc-tagttctttcatgagaaactgggttgaaagcaatatgtag-----c 16157  T
Q  103 ttggttatcacatattagcttcattgccttgacatctcctaatttgagttgt 154  Q
    |||||||| | | |||||||| |||||||||| |||||||||||||||||||    
T  16158 ttggttataaaaaattagcttaattgccttgagatctcctaatttgagttgt 16209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 16384 - 16330
Alignment:
Q  103 ttggttatcacatattagcttcattgccttgacatctcctaatttgagttgttgg 157  Q
    |||||| ||||| ||||| |||||  ||||| |||||||||||||||||||||||    
T  16384 ttggttgtcacaaattagtttcatcaccttggcatctcctaatttgagttgttgg 16330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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