View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_low_55 (Length: 262)

Name: NF18757_low_55
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_low_55
NF18757_low_55
[»] chr5 (25 HSPs)
chr5 (1-238)||(43129502-43129739)
chr5 (3-171)||(33691959-33692127)
chr5 (3-171)||(35310483-35310651)
chr5 (80-216)||(37873619-37873755)
chr5 (3-161)||(27336738-27336896)
chr5 (15-161)||(14423723-14423869)
chr5 (79-216)||(13166890-13167027)
chr5 (79-216)||(25663012-25663149)
chr5 (28-174)||(3114092-3114238)
chr5 (3-161)||(32269701-32269859)
chr5 (79-160)||(15292006-15292087)
chr5 (42-178)||(32230450-32230586)
chr5 (101-213)||(42921690-42921802)
chr5 (1-160)||(26212485-26212644)
chr5 (91-214)||(34335329-34335452)
chr5 (3-161)||(35456001-35456159)
chr5 (88-145)||(8858977-8859034)
chr5 (79-215)||(38875629-38875765)
chr5 (3-127)||(433371-433495)
chr5 (21-155)||(8100603-8100737)
chr5 (17-154)||(9829272-9829407)
chr5 (98-161)||(14436545-14436605)
chr5 (122-161)||(430647-430686)
chr5 (107-145)||(7143767-7143805)
chr5 (131-215)||(22188687-22188771)
[»] chr7 (29 HSPs)
chr7 (15-215)||(19277284-19277484)
chr7 (3-215)||(4501250-4501461)
chr7 (15-215)||(982940-983140)
chr7 (28-215)||(21326767-21326954)
chr7 (6-216)||(43856864-43857074)
chr7 (3-231)||(32584574-32584804)
chr7 (7-161)||(28517195-28517349)
chr7 (3-210)||(5825269-5825474)
chr7 (79-215)||(22197977-22198113)
chr7 (79-215)||(22239708-22239844)
chr7 (15-215)||(27521462-27521662)
chr7 (15-215)||(24527580-24527780)
chr7 (3-215)||(45613746-45613958)
chr7 (79-217)||(10905107-10905244)
chr7 (81-174)||(30216040-30216133)
chr7 (15-161)||(3676684-3676831)
chr7 (89-215)||(42295174-42295300)
chr7 (36-161)||(25186873-25186998)
chr7 (95-216)||(40726476-40726597)
chr7 (79-216)||(9281112-9281248)
chr7 (79-216)||(9292083-9292219)
chr7 (126-215)||(48539172-48539261)
chr7 (76-155)||(2904416-2904495)
chr7 (91-161)||(34772826-34772896)
chr7 (121-216)||(10032193-10032288)
chr7 (88-134)||(26770469-26770515)
chr7 (80-202)||(47679129-47679250)
chr7 (147-215)||(5972264-5972332)
chr7 (3-46)||(10905264-10905308)
[»] chr4 (31 HSPs)
chr4 (3-216)||(132375-132590)
chr4 (3-216)||(56462011-56462223)
chr4 (3-161)||(53619631-53619789)
chr4 (91-215)||(600684-600808)
chr4 (3-161)||(31847132-31847290)
chr4 (3-178)||(50000829-50001005)
chr4 (3-216)||(26521478-26521691)
chr4 (23-170)||(55933386-55933533)
chr4 (78-215)||(34107673-34107812)
chr4 (82-161)||(23255749-23255828)
chr4 (15-174)||(25504327-25504484)
chr4 (79-170)||(30940719-30940809)
chr4 (4-215)||(46391220-46391430)
chr4 (114-215)||(50483211-50483312)
chr4 (31-178)||(16957570-16957717)
chr4 (15-215)||(53170504-53170698)
chr4 (120-215)||(7536592-7536687)
chr4 (3-138)||(12918276-12918411)
chr4 (34-161)||(50462881-50463008)
chr4 (3-159)||(12053460-12053614)
chr4 (26-154)||(45385988-45386116)
chr4 (124-215)||(53098412-53098503)
chr4 (107-161)||(6865828-6865882)
chr4 (98-155)||(34536931-34536988)
chr4 (75-216)||(46440865-46441006)
chr4 (4-72)||(3330084-3330152)
chr4 (121-204)||(11562900-11562983)
chr4 (79-170)||(48656890-48656981)
chr4 (91-154)||(52022166-52022229)
chr4 (98-155)||(24719985-24720043)
chr4 (106-154)||(28883158-28883206)
[»] chr6 (20 HSPs)
chr6 (3-215)||(4206500-4206712)
chr6 (3-217)||(34304485-34304699)
chr6 (3-204)||(33220615-33220816)
chr6 (3-203)||(959583-959783)
chr6 (28-215)||(45606-45793)
chr6 (3-145)||(357621-357763)
chr6 (3-161)||(17249209-17249367)
chr6 (10-215)||(34415427-34415632)
chr6 (96-211)||(4165919-4166034)
chr6 (3-135)||(28543446-28543578)
chr6 (81-161)||(29338061-29338141)
chr6 (11-161)||(28008899-28009052)
chr6 (80-211)||(34554258-34554389)
chr6 (79-163)||(34168911-34168995)
chr6 (81-216)||(24016327-24016462)
chr6 (83-215)||(28625921-28626054)
chr6 (3-118)||(32115777-32115892)
chr6 (3-153)||(12401384-12401534)
chr6 (81-145)||(3714978-3715042)
chr6 (117-216)||(26225597-26225696)
[»] scaffold0490 (1 HSPs)
scaffold0490 (15-215)||(6325-6524)
[»] scaffold0148 (1 HSPs)
scaffold0148 (3-215)||(33241-33452)
[»] chr2 (27 HSPs)
chr2 (15-215)||(4412982-4413182)
chr2 (3-215)||(17344629-17344841)
chr2 (15-215)||(9685331-9685531)
chr2 (15-215)||(41867824-41868024)
chr2 (3-161)||(5532464-5532622)
chr2 (3-136)||(44686490-44686622)
chr2 (79-215)||(2888507-2888643)
chr2 (3-175)||(19161687-19161859)
chr2 (3-161)||(23484842-23485000)
chr2 (3-145)||(27502423-27502564)
chr2 (3-216)||(28224990-28225203)
chr2 (3-215)||(18744858-18745070)
chr2 (3-158)||(3825774-3825930)
chr2 (6-216)||(7760753-7760962)
chr2 (89-201)||(13147087-13147202)
chr2 (106-215)||(34814826-34814934)
chr2 (80-150)||(1296031-1296101)
chr2 (78-168)||(16351820-16351910)
chr2 (15-114)||(20142656-20142755)
chr2 (80-155)||(44720374-44720449)
chr2 (92-168)||(3968402-3968478)
chr2 (121-174)||(2886637-2886690)
chr2 (107-160)||(11921218-11921271)
chr2 (107-204)||(33612555-33612652)
chr2 (127-215)||(20142753-20142841)
chr2 (92-139)||(5679345-5679392)
chr2 (81-160)||(29808121-29808199)
[»] chr8 (21 HSPs)
chr8 (3-174)||(500259-500430)
chr8 (3-215)||(24125019-24125231)
chr8 (3-215)||(35739891-35740102)
chr8 (3-161)||(39434712-39434870)
chr8 (29-216)||(38815284-38815471)
chr8 (76-215)||(6592566-6592705)
chr8 (3-216)||(25021718-25021931)
chr8 (7-215)||(8619805-8620013)
chr8 (3-210)||(3187965-3188172)
chr8 (15-137)||(37517163-37517285)
chr8 (88-161)||(8882372-8882445)
chr8 (7-168)||(10189581-10189742)
chr8 (107-174)||(6618316-6618383)
chr8 (76-238)||(28196159-28196322)
chr8 (79-161)||(4073580-4073662)
chr8 (81-139)||(22589336-22589394)
chr8 (91-155)||(4699920-4699983)
chr8 (98-145)||(10556292-10556339)
chr8 (59-125)||(6792257-6792323)
chr8 (98-154)||(39671170-39671226)
chr8 (81-145)||(42922109-42922173)
[»] chr3 (28 HSPs)
chr3 (15-213)||(44198760-44198958)
chr3 (3-215)||(53785700-53785912)
chr3 (3-211)||(7900853-7901061)
chr3 (79-212)||(37132979-37133112)
chr3 (79-216)||(39583209-39583346)
chr3 (82-215)||(52741495-52741628)
chr3 (79-161)||(26772803-26772885)
chr3 (40-216)||(3443253-3443429)
chr3 (3-201)||(54508288-54508486)
chr3 (80-161)||(46940751-46940832)
chr3 (100-215)||(32546786-32546901)
chr3 (3-154)||(38146108-38146259)
chr3 (91-204)||(7502003-7502117)
chr3 (3-160)||(13582555-13582712)
chr3 (111-216)||(52411903-52412008)
chr3 (3-203)||(49017966-49018166)
chr3 (57-215)||(25325020-25325180)
chr3 (90-142)||(45676778-45676830)
chr3 (34-204)||(3376675-3376846)
chr3 (88-238)||(4473029-4473179)
chr3 (58-161)||(37992377-37992480)
chr3 (3-59)||(29861944-29862000)
chr3 (106-178)||(38670887-38670959)
chr3 (3-215)||(5338634-5338850)
chr3 (91-161)||(35484684-35484754)
chr3 (106-215)||(51234607-51234716)
chr3 (92-216)||(26856755-26856879)
chr3 (79-215)||(38978779-38978915)
[»] chr1 (24 HSPs)
chr1 (3-216)||(34644556-34644769)
chr1 (3-215)||(29169698-29169909)
chr1 (3-216)||(4861893-4862106)
chr1 (15-215)||(28041043-28041243)
chr1 (15-174)||(19035479-19035638)
chr1 (86-215)||(21472994-21473123)
chr1 (91-215)||(22346886-22347010)
chr1 (15-202)||(45659563-45659751)
chr1 (79-238)||(2898669-2898832)
chr1 (3-204)||(2764481-2764682)
chr1 (79-215)||(20259777-20259913)
chr1 (79-215)||(31737303-31737439)
chr1 (94-216)||(50314619-50314741)
chr1 (28-157)||(25375762-25375891)
chr1 (79-154)||(50161397-50161472)
chr1 (92-168)||(15584912-15584988)
chr1 (79-145)||(42919921-42919986)
chr1 (57-161)||(16500079-16500183)
chr1 (83-154)||(23043929-23044000)
chr1 (111-216)||(38731599-38731704)
chr1 (92-188)||(36486904-36487000)
chr1 (128-215)||(24177540-24177627)
chr1 (92-138)||(35387653-35387699)
chr1 (89-161)||(7433268-7433340)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-160)||(47441-47600)
[»] scaffold1768 (1 HSPs)
scaffold1768 (15-215)||(100-300)
[»] scaffold0009 (1 HSPs)
scaffold0009 (83-204)||(103108-103228)
[»] scaffold0119 (1 HSPs)
scaffold0119 (33-145)||(16195-16307)
[»] scaffold0186 (1 HSPs)
scaffold0186 (28-202)||(10364-10542)
[»] scaffold0031 (1 HSPs)
scaffold0031 (79-170)||(49447-49538)
[»] scaffold0493 (1 HSPs)
scaffold0493 (108-156)||(8525-8573)
[»] scaffold0224 (1 HSPs)
scaffold0224 (79-145)||(18345-18410)
[»] scaffold0470 (1 HSPs)
scaffold0470 (107-174)||(7634-7701)
[»] scaffold0514 (1 HSPs)
scaffold0514 (59-125)||(4300-4366)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 43129739 - 43129502
Alignment:
Q  1 aaatgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaa 100  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  43129739 aaatgcatgtgtgaaattgactggggtttcaccacttgttggattaggggtcggaacttttacggttggacattcagtcctaaaagatgcgtcaagcaaa 43129640  T
Q  101 gtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  43129639 gtggtcaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttgacattttcggtttcctaacaccagatgtttttgaccttc 43129540  T
Q  201 tacacagagttcaaagaacatgcacatcaatatcatgt 238  Q
    |||| |||||||||||||||||||||||||||||||||    
T  43129539 tacagagagttcaaagaacatgcacatcaatatcatgt 43129502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 33691959 - 33692127
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| ||||||||| || |||||||||||| || ||||||||| |  |||||||||| |||||   || |||||||| |||||||||||||||    
T  33691959 atgcatgtgtggacttgactgaggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacaggcaggcctaaaagctgcgtcaagcaaagt 33692058  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcgg 171  Q
    |||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||    
T  33692059 ggccaaacatgacaaaacgtgttatgacaatcaacatgcttttgtaccatttgcttttgacactttcgg 33692127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 35310651 - 35310483
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||| ||||| |||||||||||| || ||||||||| |  |||||||||| |||||   |  ||||||||||||||||||||||||    
T  35310651 atgcatgtgtggacttgattggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacaaccctaaaagatgcgtcaagcaaagt 35310552  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcgg 171  Q
    |||||||||||||||| | ||||||||||||||||||| |||| |||||| |||||||| || ||||||    
T  35310551 ggccaaacatgagaaagcatgttctgacaatcaacatgcttttataccatctgcttttgacactttcgg 35310483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 80 - 216
Target Start/End: Original strand, 37873619 - 37873755
Alignment:
Q  80 ctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaa 179  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||| || || |||     
T  37873619 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttttggcttcctag 37873718  T
Q  180 aaccagatgtttttgaccttctacacagagttcaaag 216  Q
     |||||| ||| ||||||||||||| |||||||||||    
T  37873719 caccagaggttgttgaccttctacatagagttcaaag 37873755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 27336896 - 27336738
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| || ||||||||  |  |||||||  | |||||   || |||||||| |||||||||||||||    
T  27336896 atgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacaataggacagacagccctaaaagttgcgtcaagcaaagt 27336797  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    || ||||||||||||| ||||||||||||||||||||  |||| |||||||||||||||    
T  27336796 ggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttg 27336738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 14423869 - 14423723
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||| ||||| |||||||||||| |||||||| ||| || |||| || || |||||   |  ||||||| ||||||||||||||||| || |||||||    
T  14423869 acttgattggggtttcaccacttgtgggattaggtgtcggacctttaaccgtaggacaggcaaccctaaaaaatgcgtcaagcaaagtgaccgaacatga 14423770  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||    
T  14423769 gaaagcgtgttctgacaatcaacatgcttttataccatttgcttttg 14423723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 13166890 - 13167027
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || |||||| || |||    
T  13166890 cctaaaatctgcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggcttccta 13166989  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaag 216  Q
      | ||||   | ||||||||||||| ||||| |||||    
T  13166990 gcatcagagactgttgaccttctacatagagtccaaag 13167027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 25663012 - 25663149
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| || |||| | || |||    
T  25663012 cctaaaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacactttcagcttccta 25663111  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaag 216  Q
      | |||| ||| |||| |||||||| ||||| |||||    
T  25663112 gcatcagaagttgttgatcttctacatagagtccaaag 25663149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 3114092 - 3114238
Alignment:
Q  28 ttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttct 127  Q
    |||||||||  | |||||||||||| |  |||||||||| |||||   || |||||||| ||| |||| |||||||||||||||||||||| | ||||||    
T  3114092 ttcaccactcatgggattaggggtcggggcttttacggtaggacaggcagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttct 3114191  T
Q  128 gacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    |||| ||||||||||||| ||||||||| ||||| || ||| |||||    
T  3114192 gacagtcaacatgtttttataccatttgtttttgacacttttggttt 3114238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 32269701 - 32269859
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| |||||||||| | | |||||| ||| |  |||||| ||| ||||||  |  |||||||| ||| |||| ||||||    
T  32269701 atgcatgtgtagacttgactggggtttcaccacttctggaattaggtgtcgggccttttatggtaggacatgcaaccctaaaagctgcatcaaccaaagt 32269800  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    || |||||||||||||  |||||||||||||||||| | |||| |||||||||||||||    
T  32269801 ggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttataccatttgcttttg 32269859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 15292006 - 15292087
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgctttt 160  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  15292006 cctaaaagtggcgtcaaacaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttatacaatttgttttt 15292087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 32230450 - 32230586
Alignment:
Q  42 gattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgt 141  Q
    ||||||||||| |||||||||||||  ||||  |||   |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |     
T  32230450 gattaggggtcagaacttttacggtaagacaagtagctttaaaagttgcgtcaagcaaagtgaccaaacatgagaaaatgtgttctgacaatcaacaagc 32230549  T
Q  142 ttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||| |||||| ||| || | || ||| |||||||||    
T  32230550 ttttataccatctgcgttcgacacttttggttttcta 32230586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 42921802 - 42921690
Alignment:
Q  101 gtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttc 200  Q
    |||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||| || || ||||||||| |||  |||||| ||| ||| |||||    
T  42921802 gtggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttc 42921703  T
Q  201 tacacagagttca 213  Q
    |||| ||||||||    
T  42921702 tacatagagttca 42921690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 26212485 - 26212644
Alignment:
Q  1 aaatgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaa 100  Q
    ||||||||||||  | |||||||||| |||| |||||||  ||||||| ||  || ||||||  ||||||     ||| ||||||| |||||||||||||    
T  26212485 aaatgcatgtgtagatttgactggggtttcatcacttgtgagattaggtgttggaccttttatcgttggaatggcagttctaaaagttgcgtcaagcaaa 26212584  T
Q  101 gtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgctttt 160  Q
    |||||||||||||||||| ||| ||||||| ||||||||| |||| ||||||||| ||||    
T  26212585 gtggccaaacatgagaaagcgtattctgacgatcaacatgcttttataccatttgttttt 26212644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 34335452 - 34335329
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtt 190  Q
    ||||||||||  |||||||||||||||| ||||| ||||||||||||||| |||| ||||||||| ||||| || |||||  ||||| | |||||| | |    
T  34335452 gtcaagcaaaagggccaaacatgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacactttcgactttctgacaccagaggct 34335353  T
Q  191 tttgaccttctacacagagttcaa 214  Q
     ||||||||||||| |||||||||    
T  34335352 gttgaccttctacatagagttcaa 34335329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 35456159 - 35456001
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| ||||||| |||| ||  ||||| || |||||||||||| |  |||||||||| ||  |  ||| || ||||| || || ||| ||| |    
T  35456159 atgcatgtgtggacttgaccggggttttgccactcgtaggattaggggtccggccttttacggtagggtaggtagcccaaaaagttgtgttaagtaaaat 35456060  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    || ||||||||||||| |||||||| |||||||||||| |||| |||| ||||||||||    
T  35456059 ggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttataccttttgcttttg 35456001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 8859034 - 8858977
Alignment:
Q  88 tgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  8859034 tgcgtcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgttttt 8858977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 38875765 - 38875629
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||  ||| |||| ||||| | ||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||| || |||| | || |||    
T  38875765 cctaaaaactgcatcaaacaaagcgaccaaacatgagaaagtgtgttctgacaatcaacatgtttttgtaccatttgtttttgacactttcagcttccta 38875666  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaa 215  Q
      |||||| | |  |||||||||||  ||||||||||    
T  38875665 gcaccagaggctgctgaccttctacgtagagttcaaa 38875629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 433495 - 433371
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| ||||||| |||| |||||||| ||| || ||| ||||  |  |||||||||| ||| |   |  | |||||| || ||||||||||||    
T  433495 atgcatgtgtggacttgaccggggtttcaccacctgtgggtttaagggtaggggcttttacggtaggatagacaaccttaaaagctgtgtcaagcaaagt 433396  T
Q  103 ggccaaacatgagaaaacgtgttct 127  Q
    |||||||||||||||| ||||||||    
T  433395 ggccaaacatgagaaagcgtgttct 433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 8100737 - 8100603
Alignment:
Q  21 ctggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaac 120  Q
    |||||| |||||||||||| |||||| | ||| | ||||| |  || ||||||  |  |||||| | ||| ||||| ||| ||| |||||||||||||||    
T  8100737 ctggggtttcaccacttgtgggattaagagtcgggactttaatagtaggacatgcatccctaaacgctgcatcaagtaaaatggtcaaacatgagaaaac 8100638  T
Q  121 gtgttctgacaatcaacatgtttttctaccatttg 155  Q
    ||||| |||||||  ||||| |||| |||||||||    
T  8100637 gtgttgtgacaatttacatgcttttataccatttg 8100603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 9829272 - 9829407
Alignment:
Q  17 ttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgaga 116  Q
    ||||||| || ||||||||||||  ||||||| ||| || ||||||  ||  || |  ||| |||||||| ||||| |||||||||||| || ||||| |    
T  9829272 ttgactgcggtttcaccacttgtaagattaggagtcggatcttttatagtaagatagatagccctaaaagttgcgt-aagcaaagtggctaa-catgata 9829369  T
Q  117 aaacgtgttctgacaatcaacatgtttttctaccattt 154  Q
    ||| ||||| |||||||||||||| |||| ||||||||    
T  9829370 aaatgtgttttgacaatcaacatgcttttataccattt 9829407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 14436605 - 14436545
Alignment:
Q  98 aaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||| || |||||| |||||    
T  14436605 aaagtggccaaacatgaaaaaacgtgttct---aatcaacatgtttttatatcatttgtttttg 14436545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 430686 - 430647
Alignment:
Q  122 tgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  430686 tgttctgacaatcaacatgcttttataccatttgcttttg 430647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 7143805 - 7143767
Alignment:
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  7143805 aaacatgagaaaacgtgttttaacaatcaacatgttttt 7143767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 22188687 - 22188771
Alignment:
Q  131 aatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    |||||||||| |||| ||| ||||| ||||| || ||||| |||| ||  |||||| | | ||||||||||||| ||||||||||    
T  22188687 aatcaacatgattttatactatttgtttttgacactttcgattttttagcaccagaggctgttgaccttctacatagagttcaaa 22188771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 19277484 - 19277284
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| |||||||||||| ||||||||  || || ||||| | || |||||   ||||||||||| ||||||||||||||| |||||||||||    
T  19277484 acttgactggggtttcaccacttgtcggattaggtttcagaccttttgccgtaggacaggcagtcctaaaagctgcgtcaagcaaagtagccaaacatga 19277385  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||||||| |||  |||||| ||| ||||||||||||| |||||||||    
T  19277384 gaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaa 19277285  T
Q  215 a 215  Q
    |    
T  19277284 a 19277284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 4501461 - 4501250
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| |||||||||||| |||||||| ||| |  ||||||| || |||||   |  |||||||| |||||||| ||||||    
T  4501461 atgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtaggacaaacaaccctaaaagctgcgtcaaacaaagt 4501362  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||  ||||||||||| || ||| |||||||||  |||||| ||| |||||||||||    
T  4501361 ggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacacttt-ggttttctagcaccagaggttgttgaccttcta 4501263  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  4501262 catagagttcaaa 4501250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 983140 - 982940
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||| ||| || ||||||||| |||||||| ||  || ||||||  || |||||   || | |||||| |||||||||||||||||||||||||||    
T  983140 acttgactagggtttaaccacttgtgggattaggtgtgggaccttttattgtaggacaggcagccataaaagctgcgtcaagcaaagtggccaaacatga 983041  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||  | |||||||||||||  |||||| ||| ||| ||||||||| |||||||||    
T  983040 gaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggccttctacatagagttcaa 982941  T
Q  215 a 215  Q
    |    
T  982940 a 982940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 21326767 - 21326954
Alignment:
Q  28 ttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttct 127  Q
    |||||||||||| |||||||| ||| || ||||||| || |||||   || ||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  21326767 ttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaaacagccctaaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgttct 21326866  T
Q  128 gacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    ||||||||||||| |||| ||||||||||||||| || ||||| ||| |||  |||||| | | |||||||| |||| ||||||||||    
T  21326867 gacaatcaacatgcttttataccatttgcttttgacactttcgatttcctagcaccagaggctgttgaccttttacatagagttcaaa 21326954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 216
Target Start/End: Complemental strand, 43857074 - 43856864
Alignment:
Q  6 catgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggc 105  Q
    |||| ||| ||||||| |||| |||||||||||| |||||||||||| |  ||||||| || |||||   |    ||||||||||||||| |||||||||    
T  43857074 catgcgtggacttgacgggggtttcaccacttgtgggattaggggtcggggcttttacagtaggacagacaacattaaaagatgcgtcaatcaaagtggc 43856975  T
Q  106 caaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacac 205  Q
     | |||||||||| |||||| ||||||||||||||  ||| ||| ||||||||||| |||||| ||||| |||| |||||| ||| |||||||||||||     
T  43856974 tagacatgagaaagcgtgttttgacaatcaacatgcgtttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttctacat 43856875  T
Q  206 agagttcaaag 216  Q
    |||||||||||    
T  43856874 agagttcaaag 43856864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 32584804 - 32584574
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||| ||| |||||| ||||| |||||||||||| |   ||||||||| ||||||  |  |||||||  ||| |||| ||||||    
T  32584804 atgcatgtgtggacttgactcgggtttcacctcttgtgggattaggggtcggggattttacggtaggacatgcaaccctaaaaattgcatcaaacaaagt 32584705  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    || ||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||| || |||  |||| |||  |||||| ||| |||||||||||    
T  32584704 ggtcaaacatgagaaaacgtgttctgacaatcaagatgcttttacaccatttgcttttgacactttatgtttcctagcaccagaggttgttgaccttcta 32584605  T
Q  203 cacagagttc--aaagaacatgcacatcaat 231  Q
     | |||||||  ||||| |||||| ||||||    
T  32584604 gatagagttccaaaagatcatgcatatcaat 32584574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 28517195 - 28517349
Alignment:
Q  7 atgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggcc 106  Q
    ||||||| |||||||||||| |||||||||||| || ||||||||  |  ||||||| || |||||   |  |||||||| |||||||||||||||||||    
T  28517195 atgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacagtaggacagacaaccctaaaagctgcgtcaagcaaagtggcc 28517294  T
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||||||||||| ||||||  |||||||||||||||||| |||||||||||||||    
T  28517295 aaacatgagaaagcgtgtttagacaatcaacatgtttttataccatttgcttttg 28517349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 5825474 - 5825269
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| || |||||||||    |||||||||  |||||   || |||||||| ||| |||||||||||    
T  5825474 atgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcgaggcttttacggcaggacaggaagccctaaaagctgcatcaagcaaagt 5825375  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    |  ||||||||| ||  |||||| ||||||||||||||||||| |||||||| |||||| || ||||||  | |||  |||||| ||| |||||||||||    
T  5825374 g--caaacatgacaatgcgtgttatgacaatcaacatgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttcta 5825277  T
Q  203 cacagagt 210  Q
    || |||||    
T  5825276 catagagt 5825269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 22198113 - 22197977
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    ||||||||  ||||||||||||||| ||||||||||||||  ||||||  ||||||||||||||||| ||||||||||||||| || ||||||||| |||    
T  22198113 cctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatttgcttttgtcactttcggtttccta 22198014  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaa 215  Q
      | |||| ||| ||||||||||||| ||||||||||    
T  22198013 gcatcagaggttgttgaccttctacatagagttcaaa 22197977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 22239708 - 22239844
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    ||||||||  ||||||||||||||| ||||||||||||||  ||||||  ||||||||||||||||| ||||||||||||||| || ||||||||| |||    
T  22239708 cctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatttgcttttgtcactttcggtttccta 22239807  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaa 215  Q
      | |||| ||| ||||||||||||| ||||||||||    
T  22239808 gcatcagaggttgttgaccttctacatagagttcaaa 22239844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 27521662 - 27521462
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    ||||||||| |  ||||||| |||| |||||||| ||| |  |||||||||| ||||||  |  | |||||| ||||| || |||||||| |||||||||    
T  27521662 acttgactgagatttcaccatttgtgggattaggtgtcgggccttttacggtaggacatgcacccttaaaagttgcgttaaacaaagtggtcaaacatga 27521563  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    ||||||||||||||||||||||||||  ||| ||| |||| |||||| || ||| ||||| |||  | |||| ||| ||||||||||||| |||||||||    
T  27521562 gaaaacgtgttctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacatagagttcaa 27521463  T
Q  215 a 215  Q
    |    
T  27521462 a 27521462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 24527780 - 24527580
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||| |||  ||| || |||| |||||||| ||| || ||||||| || |||||   || ||||||||  | |||||| |||||||  ||||||||    
T  24527780 acttgactagggtctcatcatttgtgggattaggtgtcggaccttttaccgtaggacaggcagccctaaaagcagtgtcaagtaaagtgggaaaacatga 24527681  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| || |||| |||| |||  || ||| |   ||||||||||||| |||||||||    
T  24527680 gaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagcacgagaggcggttgaccttctacatagagttcaa 24527581  T
Q  215 a 215  Q
    |    
T  24527580 a 24527580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 45613746 - 45613958
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| |||||||||||| |||||||| ||| |  ||||| | || |||||   |  |||||||| ||||||||| || ||    
T  45613746 atgcatgtgtagacttgactggggtttcaccacttgtaggattaggtgtcgggcctttttccgtaggacagacaaccctaaaagttgcgtcaagtaaggt 45613845  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    | ||||||| | ||||  ||||||||||||||||||||||||| ||||||||| ||||| || ||||||||| | |  |||||| | | ||  |||||||    
T  45613846 gaccaaacacgggaaagtgtgttctgacaatcaacatgtttttataccatttgattttgacactttcggtttccaagcaccagaggctgttagccttcta 45613945  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  45613946 catagagttcaaa 45613958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 10905244 - 10905107
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||  ||| ||||||||||||||| || ||| ||||  |||    
T  10905244 cctaaaagctgcgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatg-ctttataccatttgcttttgacacttttggttgccta 10905146  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaaga 217  Q
      ||||||   | ||||||||||||| ||||||||||||    
T  10905145 gcaccagagtatgttgaccttctacatagagttcaaaga 10905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 30216040 - 30216133
Alignment:
Q  81 taaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    |||||| ||||||||||||| ||| |||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||| || |||||||||    
T  30216040 taaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacactttcggttt 30216133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 3676831 - 3676684
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacattt-agtcctaaaagatgcgtcaagcaaagtggccaaacatg 113  Q
    |||||||||||| |||||||||||| |||||||| ||| |  ||||||| || |||||    || |||||||| ||||||||||||||||| |||||||     
T  3676831 acttgactggggtttcaccacttgtgggattaggtgtcggtccttttaccgtaggacaggccagccctaaaagctgcgtcaagcaaagtggtcaaacatc 3676732  T
Q  114 agaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||| |||||||| || ||||| ||| |||| |||||||||||||||    
T  3676731 agaaagcgtgttcttactatcaatatgcttttataccatttgcttttg 3676684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 42295174 - 42295300
Alignment:
Q  89 gcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatg 188  Q
    |||||||||||| ||||||||||| ||||| | | |||||||||||||||||||||| ||||||||| ||||   | ||||||||| |||| |||||  |    
T  42295174 gcgtcaagcaaaatggccaaacataagaaagcttcttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcctaacaccagggg 42295273  T
Q  189 tttttgaccttctacacagagttcaaa 215  Q
    || ||||||||||||| || |||||||    
T  42295274 ttgttgaccttctacatagcgttcaaa 42295300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 25186873 - 25186998
Alignment:
Q  36 ttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatca 135  Q
    |||| |||||||| ||| || ||||||| || ||||||  |  |||||||| || |||||| ||||||| | ||||||||||| ||||||| || |||||    
T  25186873 ttgtgggattaggtgtcggaccttttaccgtaggacataaaaccctaaaagttgtgtcaagtaaagtggtctaacatgagaaagcgtgttccgataatca 25186972  T
Q  136 acatgtttttctaccatttgcttttg 161  Q
    ||||||||||||||||||||||||||    
T  25186973 acatgtttttctaccatttgcttttg 25186998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 40726476 - 40726597
Alignment:
Q  95 agcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttg 194  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||| ||||| || |||||| ||  ||  | |||| ||| |||    
T  40726476 agcaaagtggccaaacataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttg 40726575  T
Q  195 accttctacacagagttcaaag 216  Q
    |||||||||| ||||| |||||    
T  40726576 accttctacatagagtccaaag 40726597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 9281112 - 9281248
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| ||| ||||||||| | || |||||||||||| |||||||| |||||||||||| |||| ||| |||||  |||| ||||||  | || |||    
T  9281112 cctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttccta 9281210  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaag 216  Q
      |||||||||| ||||||||||||| |||||||||||    
T  9281211 gcaccagatgttgttgaccttctacatagagttcaaag 9281248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 9292083 - 9292219
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| ||| ||||||||| | || |||||||||||| |||||||| |||||||||||| |||| ||| |||||  |||| ||||||  | || |||    
T  9292083 cctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttccta 9292181  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaag 216  Q
      |||||||||| ||||||||||||| |||||||||||    
T  9292182 gcaccagatgttgttgaccttctacatagagttcaaag 9292219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 48539261 - 48539172
Alignment:
Q  126 ctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    ||||||||||||||| |||| ||||||||||||||| || |||||||||||||  |||||| | | |||| | |||||| ||||| ||||    
T  48539261 ctgacaatcaacatgcttttataccatttgcttttgacactttcggttttctagcaccagaggctgttgatcgtctacatagagtccaaa 48539172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 2904495 - 2904416
Alignment:
Q  76 agtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttg 155  Q
    ||||||||||| | ||||||||||| | | ||||||||||||| | ||||| ||||||||||||| |||| || ||||||    
T  2904495 agtcctaaaagttacgtcaagcaaaatagtcaaacatgagaaagcatgttccgacaatcaacatgattttatatcatttg 2904416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 34772896 - 34772826
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||| |||||| |||||| ||||||||  |||||| |||||| || |||||||| |||||||||||||||    
T  34772896 gtcaatcaaagtagccaaatatgagaaagtgtgttcggacaattaatatgtttttataccatttgcttttg 34772826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 10032193 - 10032288
Alignment:
Q  121 gtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaag 216  Q
    |||||||||||||||| |||||||| ||| |||||||||||  |||||| | ||  ||  |  ||||||| || |||||||||| |||||||||||    
T  10032193 gtgttctgacaatcaatatgtttttatactatttgcttttgatattttcagcttcttagcattagatgttgttaaccttctacatagagttcaaag 10032288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 26770515 - 26770469
Alignment:
Q  88 tgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatc 134  Q
    ||||||||  |||||||  ||||||||||||||||||||||||||||    
T  26770515 tgcgtcaaataaagtggtaaaacatgagaaaacgtgttctgacaatc 26770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 47679250 - 47679129
Alignment:
Q  80 ctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaa 179  Q
    ||||||| ||||||| |||||||| | ||| ||||||||  ||||||| |||||||| ||  |||| ||| |||||| |||| |||||||||||| |||     
T  47679250 ctaaaagttgcgtca-gcaaagtgacaaaatatgagaaagtgtgttctcacaatcaatatacttttatactatttgcgtttgacattttcggtttcctag 47679152  T
Q  180 aaccagatgtttttgaccttcta 202  Q
     | || | ||| |||||||||||    
T  47679151 catcacaggttgttgaccttcta 47679129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 5972264 - 5972332
Alignment:
Q  147 taccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    ||||||||| ||||| |||||||  |||||||  | |||| ||| ||||||||||||| ||||||||||    
T  5972264 taccatttgtttttgacattttcatttttctagtatcagaggttgttgaccttctacatagagttcaaa 5972332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 10905308 - 10905264
Alignment:
Q  3 atgcatgtgtgaacttgactg-gggcttcaccacttgttggatta 46  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  10905308 atgcatgtgtgaacttgactgaggttttcaccacttgttggatta 10905264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 132590 - 132375
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggtt--ggacatttagtcctaaaagatgcgtcaagcaaa 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||   |||||   || |||||||| |||||||||||||    
T  132590 atgcatgtgtgaacttgactggggtttcaccacttgttggattaggggtcgggacttttacggtgtaggacaggcagccctaaaagctgcgtcaagcaaa 132491  T
Q  101 gtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttc 200  Q
     |||| |||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||  || ||||||||| |||| | ||||  || ||||| |||    
T  132490 atggcaaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgttttttacactttcggtttcctaatatcagagattgttgacattc 132391  T
Q  201 tacacagagttcaaag 216  Q
    ||||||||||| ||||    
T  132390 tacacagagtttaaag 132375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 56462011 - 56462223
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| ||||||||| || ||||||| |||||||||||||||||   ||||||||||||| | |      |||||||| |||||||| ||||||    
T  56462011 atgcatgtgtggacttgactgaggtttcaccatttgttggattaggggtcgagacttttacggttgtatagaccaccctaaaagttgcgtcaaacaaagt 56462110  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||| |||||||| ||| |||||||||||||||||||||||||| ||||||||| ||| | || ||| ||||| |||  |||||| ||| |||||||||||    
T  56462111 ggc-aaacatgataaagcgtgttctgacaatcaacatgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttcta 56462209  T
Q  203 cacagagttcaaag 216  Q
    || |||||||||||    
T  56462210 catagagttcaaag 56462223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 53619789 - 53619631
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| || |||| |||  |  ||||||| || |||||   |  |||||||| |||||||||||||||    
T  53619789 atgcatgtgtggacttgactggggtttcaccacttgtgggtttagaggtgggggcttttacagtaggacaggcaaccctaaaagctgcgtcaagcaaagt 53619690  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  53619689 ggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgtttttg 53619631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 600684 - 600808
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtt 190  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||| || ||||||||| |||| |||||| |||    
T  600684 gtcaagcaaagtgaccaaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgcttttgtcactttcggtttcctaacaccagaggtt 600783  T
Q  191 tttgaccttctacacagagttcaaa 215  Q
     ||||||||||||| ||||||||||    
T  600784 gttgaccttctacatagagttcaaa 600808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 31847290 - 31847132
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||| ||| |||||||||||| || ||||||||  |  ||||||| || |||||   || |||||||| |||||||||||||||    
T  31847290 atgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgggggcttttacagtaggacaggcagccctaaaagctgcgtcaagcaaagt 31847191  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    || ||||||||||||| | |||||||||| ||||||||||||| |||||||||||||||    
T  31847190 ggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatttgcttttg 31847132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 50000829 - 50001005
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| || | ||||||  |  |||||||||| |||||   ||  ||||||| |||||||||||||||    
T  50000829 atgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgggggcttttacggtaggacagacagctctaaaagctgcgtcaagcaaagt 50000928  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatg-tttttctaccatttgcttttggcattttcggttttcta 178  Q
    || ||||||||||||| ||||||||||||||||||||| ||||  ||| ||||||||||| || ||| || ||||||    
T  50000929 ggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttaatacaatttgcttttgacacttttggctttcta 50001005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 26521691 - 26521478
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    |||||||| || |||||||||| | |||| ||||||| |||||||||||| || |||||| ||| |||||   |  |||||||| |||||||| ||||||    
T  26521691 atgcatgtatggacttgactggagtttcatcacttgtgggattaggggtcagaccttttatggtaggacaaacaaccctaaaagttgcgtcaaacaaagt 26521592  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||| |||||||| |||||||||| |||||||||||||| |||| || ||| ||||||   || ||| ||||| |||  |||||| | | |||||||||||    
T  26521591 ggctaaacatgaaaaaacgtgttatgacaatcaacatgcttttatatcatatgctttcaacacttttggtttcctagcaccagaggctgttgaccttcta 26521492  T
Q  203 cacagagttcaaag 216  Q
    || | |||||||||    
T  26521491 catacagttcaaag 26521478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 55933386 - 55933533
Alignment:
Q  23 ggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgt 122  Q
    |||| |||||| ||||| || ||| ||||| |  |||||||||| ||||| | || |||||||| |||||||| ||||||||||||||||||||||   |    
T  55933386 ggggtttcaccccttgtgggtttaagggtcagggcttttacggtaggacagtcagccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagttt 55933485  T
Q  123 gttctgacaatcaacatgtttttctaccatttgcttttggcattttcg 170  Q
    ||||| |||||||||||| |||| ||||||||||||||| || |||||    
T  55933486 gttctaacaatcaacatgcttttataccatttgcttttgacactttcg 55933533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 34107673 - 34107812
Alignment:
Q  78 tcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgt--tctgacaatcaacatgtttttctaccatttgcttttggcattttcggtttt 175  Q
    ||||||||  |||||||| | ||||||||||||||||||||||||||  || || ||||||||||||||| ||||||||| ||||| || ||||| |||     
T  34107673 tcctaaaaattgcgtcaaacgaagtggccaaacatgagaaaacgtgtgttcagataatcaacatgtttttataccatttgtttttgacactttcgatttc 34107772  T
Q  176 ctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    |||  |||||| | | ||||||||||||| ||||||||||    
T  34107773 ctagcaccagaggctgttgaccttctacatagagttcaaa 34107812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 23255828 - 23255749
Alignment:
Q  82 aaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||| |||||    
T  23255828 aaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaattaacatgcttttataccatttgtttttg 23255749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 25504484 - 25504327
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    ||||||||| || |||||||||||| |||||||| ||| |  ||||||||||  ||||   |  |||||| | ||| ||||||||| ||| |||||||||    
T  25504484 acttgactgaggtttcaccacttgtgggattaggcgtcaggccttttacggtatgacaggcaaccctaaa-gttgcatcaagcaaa-tggtcaaacatga 25504387  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    ||||||||||||| |||||| |||||||||| |||| |||||||||| |||||| |||||    
T  25504386 gaaaacgtgttctaacaatcgacatgtttttataccgtttgcttttgacatttttggttt 25504327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 30940719 - 30940809
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcg 170  Q
    |||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||| || |||||    
T  30940719 cctaaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacca-ttgcttttgacactttcg 30940809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 46391220 - 46391430
Alignment:
Q  4 tgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtg 103  Q
    |||||||||||| |||| ||||| |||||||||||| ||||||| |||| || |||||||||| ||| || | | |||||||| | |||| | ||||| |    
T  46391220 tgcatgtgtgaatttgattggggtttcaccacttgtaggattagaggtcggatcttttacggtaggatatgttgacctaaaagctacgtcgaacaaagcg 46391319  T
Q  104 gccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctac 203  Q
    |  ||||| |||||||| |||||| |||  |||||||||||| ||||| |||||| |  |||||||| ||| |||  |  ||| ||| ||||||||||||    
T  46391320 gttaaacacgagaaaacatgttctcacagccaacatgtttttatacca-ttgcttgtaacattttcgatttcctatcagtagaggttgttgaccttctac 46391418  T
Q  204 acagagttcaaa 215  Q
    | | ||||||||    
T  46391419 ataaagttcaaa 46391430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 50483211 - 50483312
Alignment:
Q  114 agaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttca 213  Q
    ||||| ||| ||||||||||||||||| |||| ||||||||||||| | || ||||||||| |||  |||||| ||| ||||||||||||| ||||||||    
T  50483211 agaaagcgtcttctgacaatcaacatgattttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttca 50483310  T
Q  214 aa 215  Q
    ||    
T  50483311 aa 50483312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 16957717 - 16957570
Alignment:
Q  31 accacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgac 130  Q
    |||||||||||||||||||||| |  || |||| || ||| |   ||||||||||| |||||  |||||| || ||||||||||||||  ||| |||||     
T  16957717 accacttgttggattaggggtcgggcctcttacagtaggataggcagtcctaaaagttgcgtagagcaaaatgaccaaacatgagaaagtgtgctctgat 16957618  T
Q  131 aatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||||| || | ||||||||||||||| || |||| ||||||||    
T  16957617 aatcaacatgcttatataccatttgcttttgacactttcagttttcta 16957570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 53170698 - 53170504
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| ||||||||| || |||||||| ||| || ||||||| ||  ||||   || ||||||||  | || | | ||||| |||||||||||    
T  53170698 acttgactggggtttcaccactcgtgggattaggtgtcggaccttttacagtatgacaggcagccctaaaagtcgtgttaggtaaagtagccaaacatga 53170599  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    |||| |||||||||||| |||||||| ||       ||||||||||| || ||||||||| |||  |||||| | | ||||||||||||| |||||||||    
T  53170598 gaaagcgtgttctgacagtcaacatgctt------gatttgcttttgacactttcggtttgctagcaccagaggctgttgaccttctacatagagttcaa 53170505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 7536592 - 7536687
Alignment:
Q  120 cgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||| || |||| |||| |||  |||||| ||| ||||||||||||| ||||||||||    
T  7536592 cgtgttttgacaatcaacatgtttttatacaatttgtttttgacaatttcagtttcctagcaccagaggttgttgaccttctacatagagttcaaa 7536687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 12918276 - 12918411
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| | |||||||| | |||| ||||||| |||||| |  || |  |||||||||| |||||   |  |||||||| |||||||| ||||||    
T  12918276 atgcatgtgtgtagttgactggagtttcatcacttgtgggattaagattcggggcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagt 12918375  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaaca 138  Q
    || ||||||| ||||| |||||||||||||||||||    
T  12918376 ggtcaaacataagaaatcgtgttctgacaatcaaca 12918411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 50462881 - 50463008
Alignment:
Q  34 acttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaat 133  Q
    ||||||||||||||| ||| | |||| |||||| |||||   || | |||||| ||||||||||||  || ||||||||||||||  || ||| ||||||    
T  50462881 acttgttggattaggtgtcggtacttctacggtaggacagacagccttaaaagttgcgtcaagcaagatgaccaaacatgagaaagtgtcttccgacaat 50462980  T
Q  134 caacatgtttttctaccatttgcttttg 161  Q
    ||||||| |||  |||||||||||||||    
T  50462981 caacatgctttcataccatttgcttttg 50463008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 12053614 - 12053460
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| || | | ||||| ||||||| | |||||||| ||||||   |||||||| || |||||   ||  ||||||| |||||||| ||||||    
T  12053614 atgcatgtgtggacattattggggtttcaccattagttggattgggggtcg--acttttacagtaggacaaacagctctaaaagctgcgtcaaacaaagt 12053517  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttt 159  Q
     | ||||||||||||| |||||||| |||||||| | |||||| || ||||||||||    
T  12053516 tgtcaaacatgagaaatcgtgttctaacaatcaaaacgtttttatatcatttgcttt 12053460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 45385988 - 45386116
Alignment:
Q  26 gcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgtt 125  Q
    |||||||||||||| |||||||||  |  ||||||| |||| ||||||  |  |||||||| |  |||||| ||||||| ||||||| ||||| ||||||    
T  45385988 gcttcaccacttgtgggattagggcccgaaacttttgcggtaggacatgcaaccctaaaagctaagtcaaggaaagtggtcaaacataagaaagcgtgtt 45386087  T
Q  126 ctgacaatcaacatgtttttctaccattt 154  Q
    |||||||||||  | ||||| ||||||||    
T  45386088 ctgacaatcaatttctttttataccattt 45386116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 53098503 - 53098412
Alignment:
Q  124 ttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    ||||||||||||||||||||||  ||| ||| |||||| |||||| ||||| |||  | |||| ||| || |||||||||| ||||||||||    
T  53098503 ttctgacaatcaacatgtttttgaaccgtttccttttgacatttttggtttcctagcatcagaggttgttaaccttctacatagagttcaaa 53098412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 6865828 - 6865882
Alignment:
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||| |||||||||||||||||| ||||||||| |||| || ||||||||||||    
T  6865828 aaacacgagaaaacgtgttctgactatcaacatgcttttatatcatttgcttttg 6865882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 34536931 - 34536988
Alignment:
Q  98 aaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttg 155  Q
    |||||| |||||||||| |||||||||| ||||||||||||| ||||| ||| |||||    
T  34536931 aaagtgaccaaacatgaaaaaacgtgttatgacaatcaacatatttttatactatttg 34536988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 46440865 - 46441006
Alignment:
Q  75 tagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    ||||||||||||   |||||| |||||||| ||||||| | |||  ||||||| ||||| |||| |||||| || |||||||||||| || |||||| ||    
T  46440865 tagtcctaaaagtaacgtcaaacaaagtggtcaaacataaaaaagtgtgttctaacaattaacacgtttttatatcatttgcttttgacactttcggctt 46440964  T
Q  175 tctaaaaccagatgtttttgaccttctacacagagttcaaag 216  Q
     |||  | |||| | |  |||||||||||| ||||| |||||    
T  46440965 cctagcatcagaagctgctgaccttctacatagagtccaaag 46441006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 3330152 - 3330084
Alignment:
Q  4 tgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggaca 72  Q
    |||||||||| |||||||||||| |||||||||||| || ||||||||  |  |||||||||| |||||    
T  3330152 tgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacggtaggaca 3330084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 11562983 - 11562900
Alignment:
Q  121 gtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctaca 204  Q
    |||||| ||||||||||||| |||| || ||||| |||| | ||||||||||||||||| ||  || ||| |||| ||||||||    
T  11562983 gtgttcggacaatcaacatgcttttatatcatttactttagacattttcggttttctaacactcgaggttgttgatcttctaca 11562900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 48656890 - 48656981
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcg 170  Q
    |||||||| | | ||||| ||| ||| |||||||||||||  ||||| || ||||||| |||||||| ||||||||| ||||| || |||||    
T  48656890 cctaaaagtttcatcaagtaaaatggacaaacatgagaaagtgtgttatgtcaatcaaaatgtttttataccatttgtttttgacactttcg 48656981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 52022229 - 52022166
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 154  Q
    ||||| ||||||| ||||| |||||| || ||||||||||| || |||||||||| ||||||||    
T  52022229 gtcaatcaaagtgaccaaaaatgagagaaagtgttctgacagtcgacatgtttttataccattt 52022166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 24720043 - 24719985
Alignment:
Q  98 aaagtggccaaacatgagaaaa-cgtgttctgacaatcaacatgtttttctaccatttg 155  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||||||| || ||||||    
T  24720043 aaagtggtcaaacatgataaaaacgcgttctgacaatcaacatgtttttatatcatttg 24719985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 28883158 - 28883206
Alignment:
Q  106 caaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 154  Q
    |||||||||||||||||||||  |||| |||||||||||| || |||||    
T  28883158 caaacatgagaaaacgtgttcgaacaaccaacatgtttttatatcattt 28883206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 4206500 - 4206712
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||||  || || |||||||||| ||||||  || | ||||||  ||||||||||||||    
T  4206500 atgcatgtgtagacttgactggggtttcaccacttgtgggattaggcatcagaccttttacggtaggacatgcagccttaaaagtggcgtcaagcaaagt 4206599  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||| |||||||||||| |||||||||||||| |||||| |||| || |||||||||||| || |||||| || |||  |||||| ||| |||||||||||    
T  4206600 ggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttcta 4206699  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  4206700 catagagttcaaa 4206712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 34304699 - 34304485
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||| ||||| |||||||||||| || ||||| ||| |  ||||||||||||||||  ||| |||||||| ||||||||||||| |    
T  34304699 atgcatgtgtggacttgattggggtttcaccacttgtgggtttaggagtcggggcttttacggttggacagctagccctaaaagctgcgtcaagcaaaat 34304600  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
      |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||| || || |||  | |||||| | |||||||||||    
T  34304599 aaccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttgggcttcctagcatcagatgatgttgaccttcta 34304500  T
Q  203 cacagagttcaaaga 217  Q
    || ||||| ||||||    
T  34304499 catagagtccaaaga 34304485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 33220615 - 33220816
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||||| |||||||||| |||||||||||| || ||||||||| |  |||||||||| |||||   ||  ||||||| ||| |||||||||||    
T  33220615 atgcatgtgtgaatttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacagctctaaaagctgcatcaagcaaagt 33220714  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    |||||||||||||||| |||||  |||||||||||||| |||| ||||||||||||||| || |||||| || |||  | | || ||| |||||||||||    
T  33220715 ggccaaacatgagaaagcgtgtgttgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgaccttcta 33220814  T
Q  203 ca 204  Q
    ||    
T  33220815 ca 33220816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 959783 - 959583
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||| ||  | |||||||||| | |||||||| ||| |  |||||||||| |||||   |  |||||||| || ||||||||||||    
T  959783 atgcatgtgtggacttgattgaagtttcaccacttatgggattaggtgtcgggccttttacggtaggacaaacaaccctaaaagttgtgtcaagcaaagt 959684  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||| || |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||| |||  |||||| ||| |||||||||||    
T  959683 ggctaaccatgagaaaacgtgttctgacaatcaacatgtctttataccatttgtttttgacattttcggtttcctagcaccagaggttgttgaccttcta 959584  T
Q  203 c 203  Q
    |    
T  959583 c 959583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 45606 - 45793
Alignment:
Q  28 ttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttct 127  Q
    |||||||||||| |||||||| ||| || ||||||| || |||||   ||  ||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  45606 ttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaggcagctctaaaagctgcatcaagcaaagtgatcaaacatgagaaaacgtgttct 45705  T
Q  128 gacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    ||||||||||||| |||| | ||||||| ||||| || |||||||||  ||  |||||| | | ||||||||||||| ||||||||||    
T  45706 gacaatcaacatgcttttattccatttgtttttgacactttcggtttcttagcaccagaggctgttgaccttctacatagagttcaaa 45793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 357621 - 357763
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||| | |||||||||||| || ||||||||| |  |||||||||| |||||   || |||||||| | |||||||||||||    
T  357621 atgcatgtgtggacttgactggagtttcaccacttgtgggtttaggggtcggtgcttttacggtaggacaggcagccctaaaagcttcgtcaagcaaagt 357720  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    |||||||||||||||| |||||||||||||| |||||| ||||    
T  357721 ggccaaacatgagaaagcgtgttctgacaatgaacatgctttt 357763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 17249209 - 17249367
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| ||||||| |||| || || || ||  |  |||||||||| |||||   |  |||||||| |||||||| ||||||    
T  17249209 atgcatgtgtggacttgactggggtttcaccatttgtgggtttcggagtgggcgcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagt 17249308  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||||||||||||||  |||||||||||||||||||| |||| |||||||||||||||    
T  17249309 ggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttgcttttg 17249367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 34415632 - 34415427
Alignment:
Q  10 tgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaa 109  Q
    ||||||||||| ||||| ||||||||  ||||||||||||||| | ||||||||||| ||| |   |  | || ||| ||||||||||||| |||| |||    
T  34415632 tgtgaacttgattggggtttcaccacacgttggattaggggtcaggacttttacggtaggataggcatccttacaagctgcgtcaagcaaaatggcgaaa 34415533  T
Q  110 catgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagag 209  Q
    |||||||||  |||||||||||||||||||| |||| | ||||||| ||||| || ||| ||||| |||| |||| |||   ||||||||||| | ||||    
T  34415532 catgagaaagtgtgttctgacaatcaacatgcttttatgccatttgtttttgacactttaggtttcctaacaccaaatgcagttgaccttctatatagag 34415433  T
Q  210 ttcaaa 215  Q
    ||||||    
T  34415432 ttcaaa 34415427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 4165919 - 4166034
Alignment:
Q  96 gcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttga 195  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| |||| || |||||||||||| || |||||| || |||  |||||| ||| ||||    
T  4165919 gcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttga 4166018  T
Q  196 ccttctacacagagtt 211  Q
    ||||||||| ||||||    
T  4166019 ccttctacatagagtt 4166034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 28543578 - 28543446
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| | ||||||| || |||||||||||| ||||||| |||| | |||||||||||  ||||   || | ||||||  ||||||||||||||    
T  28543578 atgcatgtgtggatttgactgaggtttcaccacttgtgggattagaggtcaggacttttacggtaagacaggcagccttaaaagtcgcgtcaagcaaagt 28543479  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatca 135  Q
    |||||||||||||||| |||||| ||| |||||    
T  28543478 ggccaaacatgagaaatcgtgttttgaaaatca 28543446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 29338061 - 29338141
Alignment:
Q  81 taaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||| |||||||||||| | || |||||||||||||||    
T  29338061 taaaagatgtgtcaagcaaagctgccaaacatgagaaaacgtgttctaacaatcaacatgctcttataccatttgcttttg 29338141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 28008899 - 28009052
Alignment:
Q  11 gtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaac 110  Q
    |||||||||||||| | ||||||||| || |||||||||||| |  |||||||||| ||||||  |  |||||||| | |||||||||||| || |||||    
T  28008899 gtgaacttgactggagtttcaccactcgtgggattaggggtcggggcttttacggtaggacatgcaaccctaaaagctacgtcaagcaaagcggtcaaac 28008998  T
Q  111 atgagaaaacgtgttctgacaatc---aacatgtttttctaccatttgcttttg 161  Q
    |||||||| | |||||| ||||||   || ||| |||| |||||||||||||||    
T  28008999 atgagaaagcttgttctaacaatcaagaatatggttttataccatttgcttttg 28009052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 34554258 - 34554389
Alignment:
Q  80 ctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaa 179  Q
    ||||||| |||||||||||||  | |||||||||||||| |||||||||| |||||| |||||||| |||||||| |||||| ||  ||||| || |||     
T  34554258 ctaaaagttgcgtcaagcaaaacgaccaaacatgagaaagcgtgttctgataatcaagatgtttttataccatttacttttgacacattcggcttcctag 34554357  T
Q  180 aaccagatgtttttgaccttctacacagagtt 211  Q
     |||||||| | ||||| ||||||| ||||||    
T  34554358 caccagatgctattgactttctacatagagtt 34554389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 34168995 - 34168911
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggc 163  Q
    |||||||  ||||||||||||||||||||||||||||||| | ||||  ||||| ||||||| |||| |||||||||||||||||    
T  34168995 cctaaaatttgcgtcaagcaaagtggccaaacatgagaaagcatgtttggacaagcaacatgcttttataccatttgcttttggc 34168911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 24016462 - 24016327
Alignment:
Q  81 taaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaa 180  Q
    |||||| ||| ||||| ||| | | ||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |||  | ||| ||||| |||      
T  24016462 taaaagttgcatcaagtaaaatagtcaaacatgagaaagcttgttctcacaatcaacatgtttttataccatttgctattgatagttttggtttcctagc 24016363  T
Q  181 accagatgtttttgaccttctacacagagttcaaag 216  Q
    |||||||||| ||||  || |||| |||||||||||    
T  24016362 accagatgttgttgattttttacatagagttcaaag 24016327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 28626054 - 28625921
Alignment:
Q  83 aaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaaca-tgtttttctaccatttgcttttggcattttcggttttctaaaa 181  Q
    |||| ||||||||| || ||||| ||||| |||||||||||||||||||||||||| | ||||| ||||||||| ||||  || ||||  ||| |||  |    
T  28626054 aaagctgcgtcaagtaaggtggctaaacacgagaaaacgtgttctgacaatcaacattttttttataccatttgttttttacactttcaatttcctagca 28625955  T
Q  182 ccagatgtttttgaccttctacacagagttcaaa 215  Q
    ||||| ||| |||| |||||||| | ||||||||    
T  28625954 ccagaggttgttgagcttctacataaagttcaaa 28625921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 32115892 - 32115777
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  ||||||| |||| |||| ||||| | |||||||| ||| |   ||||||| | ||||||  || | |||||| |||||||| ||||||    
T  32115892 atgcatgtgtagacttgaccggggtttcatcacttatgggattaggtgtcgggcattttacgttaggacatgcagccttaaaagttgcgtcaaacaaagt 32115793  T
Q  103 ggccaaacatgagaaa 118  Q
    ||||||||||||||||    
T  32115792 ggccaaacatgagaaa 32115777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 12401534 - 12401384
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||| ||||| |||||||||| | |||||| || || |  |||||| ||| |||||   ||  ||||||| |||||||| ||||||    
T  12401534 atgcatgtgtagacttgattggggtttcaccacttatgggattatggttcagggcttttatggtaggacaagcagcactaaaagttgcgtcaaacaaagt 12401435  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatt 153  Q
    |||||||||| ||| | |||||| ||  |||||||||| || | |||||||    
T  12401434 ggccaaacataagatagcgtgttttgctaatcaacatgcttatataccatt 12401384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 3715042 - 3714978
Alignment:
Q  81 taaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    |||||| || ||||| |||| |||  ||||||||||||||||||||| ||||| |||||||||||    
T  3715042 taaaagttgtgtcaaacaaaatggttaaacatgagaaaacgtgttctcacaattaacatgttttt 3714978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 26225597 - 26225696
Alignment:
Q  117 aaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaag 216  Q
    |||| ||||||||||||||||||| |||| ||||| ||   |||| |||||| || ||||||  || ||||||| ||| ||||| ||| |||||||||||    
T  26225597 aaacatgttctgacaatcaacatgcttttttaccagttatgtttgacatttttggctttctagcactagatgttgttggccttcaacatagagttcaaag 26225696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 6524 - 6325
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| |||||||||||| ||||||||| || || ||||||| || |||||   || |||||||| ||||||||| |||||||||||||||||    
T  6524 acttgactggggtttcaccacttgtgggattaggg-tcggaccttttaccgtaggacagacagccctaaaagttgcgtcaagtaaagtggccaaacatga 6426  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    |||| ||||||||||||||||||||| || | ||||||||||||||| || |||| |||| |||  |||||| | | ||||||||||||| |||||||||    
T  6425 gaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacactttcagtttcctagcaccagaggctgttgaccttctacatagagttcaa 6326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 33452 - 33241
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    |||||||||  ||||||| ||||| |||||||||| | |||||||| ||| |  |||||||||| |||||   |  ||| ||||  || |||||||||||    
T  33452 atgcatgtgcaaacttgattggggtttcaccacttatgggattaggtgtcgggccttttacggtaggacaggcaa-ccttaaagtggcatcaagcaaagt 33354  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||| |||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||| |||||| ||| |||||||||||    
T  33353 ggctaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttcta 33254  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  33253 catagagttcaaa 33241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 4412982 - 4413182
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| |||||||||||| |||||| | ||| || ||||||| || |||||   |  |||||||| || ||||||||||||||||||||||||    
T  4412982 acttgactggggtttcaccacttgtgggattaagtgtcagaccttttaccgtaggacaggcaaccctaaaagctgtgtcaagcaaagtggccaaacatga 4413081  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||||||| |||  ||||||  || ||||||||||||| || ||||||    
T  4413082 gaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttctacatagggttcaa 4413181  T
Q  215 a 215  Q
    |    
T  4413182 a 4413182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 17344841 - 17344629
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| ||||| |||||| |||||||| ||| || ||||||| || ||| |   |||||| |||| ||||||||| || ||    
T  17344841 atgcatgtgtagacttgactggggtttcacaacttgtgggattaggtgtcagaccttttaccgtaggaaagccagtccttaaagctgcgtcaagtaaggt 17344742  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||||||||| ||||||||||||| | |||||||||||| |||| ||||||||||||||| || |||| |||| |||  |||| | | | |||||||||||    
T  17344741 ggccaaacacgagaaaacgtgttttcacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagcaccataggctgttgaccttcta 17344642  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  17344641 catagagttcaaa 17344629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 9685331 - 9685531
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| |||||||||||| |||||||| ||| || ||||||| || ||| |   || |||||||   ||||||||||||||||||||||||||    
T  9685331 acttgactggggtttcaccacttgtgggattaggtgtcagaccttttaccgtaggataggcagccctaaaatccgcgtcaagcaaagtggccaaacatga 9685430  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
     ||| ||||||||||||||||||||| |||| ||||||||||||||| || ||| | |||||||  || ||| | | | ||||||||| | |||||||||    
T  9685431 aaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttgattttctagcactagaggctgtggaccttctatatagagttcaa 9685530  T
Q  215 a 215  Q
    |    
T  9685531 a 9685531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 41867824 - 41868024
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    ||||||||| |  ||||| |||||| |||||||| ||| || ||||||  || |||||   || | |||||| ||||||||||||||||| |||||||||    
T  41867824 acttgactgagatttcacgacttgtgggattaggtgtcggaccttttatcgtaggacaggcagccttaaaagctgcgtcaagcaaagtggtcaaacatga 41867923  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    |||| | ||||||||||||||||||| |||| ||||||||||||||| || |||||| || |||  |||||| | | ||||||||||||| |||||||||    
T  41867924 gaaagcatgttctgacaatcaacatgcttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacatagagttcaa 41868023  T
Q  215 a 215  Q
    |    
T  41868024 a 41868024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 5532622 - 5532464
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    |||||||||||||||| || || | |||||||||  | |||||||||||| |   ||||||||| ||||||  || |||||||| |||||||||||||||    
T  5532622 atgcatgtgtgaacttaaccggagtttcaccactcataggattaggggtcggggattttacggtaggacatgcagccctaaaagctgcgtcaagcaaagt 5532523  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    || |||||||||||||||||||| |||||||||||||| |||| ||| |||| ||||||    
T  5532522 ggtcaaacatgagaaaacgtgttgtgacaatcaacatgcttttatactatttacttttg 5532464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 44686622 - 44686490
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| || ||||||||| |  |||||||| | |||||   ||||||||||| || ||||||||| ||    
T  44686622 atgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacgataggacagacagtcctaaaagctg-gtcaagcaatgt 44686524  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaa 136  Q
    |||||||||||||||| |||||||||||||||||    
T  44686523 ggccaaacatgagaaagcgtgttctgacaatcaa 44686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 2888643 - 2888507
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | || || || ||| || || |||    
T  2888643 cctaaaagttgcgtctagcaaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgacacttttggcttccta 2888544  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    | || ||| ||| |||||||||||||||  |||||||    
T  2888543 acacaagaggttgttgaccttctacacaaggttcaaa 2888507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 19161687 - 19161859
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||| | ||| ||||||||||||  ||||||  ||| |  |||||| ||| ||||||  |  |||||||  ||||||||| |||||    
T  19161687 atgcatgtgtagacttgaatagggtttcaccacttgtgagattagatgtcaggccttttatggtaggacatacatccctaaaatctgcgtcaagaaaagt 19161786  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggtttt 175  Q
    || ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  19161787 gggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactttcggtttt 19161859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 23484842 - 23485000
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||| ||||| |||||||||||| |||||| | ||| |  |||| ||||| |||||  ||| |||||||| | |||||| ||||||    
T  23484842 atgcatgtgtagacttgattggggtttcaccacttgtgggattaagtgtcgggcctttaacggtgggacaactagccctaaaagctacgtcaaacaaagt 23484941  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||||| |||||||| | ||||||||||||||||||| |||| ||||||||| |||||    
T  23484942 ggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatttgtttttg 23485000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 27502564 - 27502423
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| || ||| ||||| |||||||||||| || ||||||||| || |||||||| | ||||| | |  |||||||| |||||||||||||||    
T  27502564 atgcatgtgtggacctgaatggggtttcaccacttgtgggtttaggggtcagagcttttacgataggacaataac-cctaaaagctgcgtcaagcaaagt 27502466  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    || ||||||||||||||||||||| ||||| ||||||| ||||    
T  27502465 ggtcaaacatgagaaaacgtgttccgacaaacaacatgctttt 27502423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 28225203 - 28224990
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||| ||||| ||||| |||||| || ||||| ||  |  |||||||||| |||||   |    |||||| |||||||||||||||    
T  28225203 atgcatgtgtggacttgaatggggtttcactacttgtgggcttaggagttagggcttttacggtaggacaaacaactttaaaagctgcgtcaagcaaagt 28225104  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    | ||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||| || |||||| || |||    |||| ||| |||||||||||    
T  28225103 gaccaaatatgagaaagcgtattctgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttcta 28225004  T
Q  203 cacagagttcaaag 216  Q
    || ||||| |||||    
T  28225003 catagagtccaaag 28224990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 18744858 - 18745070
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| |||||||||||| |||||||| ||| |  | ||||| ||   |||   || ||| ||||  ||||||||  | ||    
T  18744858 atgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcaggccatttaccgtaacacaggaagcccttaaagcagcgtcaagttaggt 18744957  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||||||||| |||||| ||||||||||||||||||||  |||| ||||||||||||||| |||||||| |||||||  |||| | | | ||| |||||||    
T  18744958 ggccaaacacgagaaagcgtgttctgacaatcaacatacttttataccatttgcttttgacattttcgattttctagcaccataggctgttggccttcta 18745057  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  18745058 catagagttcaaa 18745070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 3825930 - 3825774
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||| || || |||||| ||||| |||||||||||| | |||||||||||  ||||   || |||||||| |||||||||||||||    
T  3825930 atgcatgtgtggacttgattgaggtttcaccccttgtgggattaggggtcaggacttttacggtatgacagagagccctaaaagctgcgtcaagcaaagt 3825831  T
Q  103 ggccaaacatgagaaaacgtgtt-ctgacaatcaacatgtttttctaccatttgctt 158  Q
    || ||||||||| |||   | || ||||||||| |||||||||| |  |||||||||    
T  3825830 ggtcaaacatgaaaaagttttttcctgacaatctacatgtttttatttcatttgctt 3825774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 7760753 - 7760962
Alignment:
Q  6 catgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggc 105  Q
    ||||||||||||||||| ||| |||||||||||| |||||| |   |   ||||||| ||| |||||   |  ||| ||||  |||||||| ||||||||    
T  7760753 catgtgtgaacttgactagggtttcaccacttgtgggattatgaaccaagacttttatggtgggacaagcaaccctcaaagtcgcgtcaagtaaagtggc 7760852  T
Q  106 caaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacac 205  Q
    ||| |||||||||||||| ||| |||||| |||| ||||  ||| |||||| || | ||  || |||||||||  |||||| ||| |||||||||||||     
T  7760853 caatcatgagaaaacgtgatctaacaatc-acatattttcttacgatttgcattagacacctttggttttctatcaccagaggttgttgaccttctacat 7760951  T
Q  206 agagttcaaag 216  Q
    |||||||||||    
T  7760952 agagttcaaag 7760962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 13147087 - 13147202
Alignment:
Q  89 gcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacat---gtttttctaccatttgcttttggcattttcggttttctaaaaccag 185  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||| |||    ||||| ||||||||| ||||| || ||| |||||||||| |||||    
T  13147087 gcgtcaagaaaagtggtcaaacatgagaaagcgtgttctgacaatcagcatatactttttataccatttgattttgacacttttggttttctaacaccag 13147186  T
Q  186 atgtttttgaccttct 201  Q
    |  || ||||||||||    
T  13147187 agattgttgaccttct 13147202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 34814826 - 34814934
Alignment:
Q  106 caaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacac 205  Q
    ||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||| | || |||||| || |||| ||||||   | |||||||||||||     
T  34814826 caaacatgagaaagcgtgttctgacaatcaatatgcttttataccatttgctttcgacactttcgg-ttcctaacaccagagactgttgaccttctacat 34814924  T
Q  206 agagttcaaa 215  Q
    ||||||||||    
T  34814925 agagttcaaa 34814934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 1296031 - 1296101
Alignment:
Q  80 ctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctacc 150  Q
    ||||||| |||||||| |||| ||||||||||||||||||  |||||||||||| ||||||||||| ||||    
T  1296031 ctaaaagctgcgtcaaacaaaatggccaaacatgagaaaatatgttctgacaataaacatgtttttatacc 1296101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 16351820 - 16351910
Alignment:
Q  78 tcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcatttt 168  Q
    ||||||||| || |||||||||||||| |||||||||||||| ||||||| |||||||||||  |||| ||   |||||||||| ||||||    
T  16351820 tcctaaaagttgtgtcaagcaaagtggtcaaacatgagaaaatgtgttctcacaatcaacataattttatattgtttgcttttgacatttt 16351910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 20142656 - 20142755
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||| |||||||||||||||||| |||||||| |||  | ||||||| || |||||   ||  ||||||| | |||||||||||||||||||||||||    
T  20142656 acttgattggggcttcaccacttgtgggattaggtgtcgtaccttttaccgtaggacaggcagctctaaaagcttcgtcaagcaaagtggccaaacatga 20142755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 44720449 - 44720374
Alignment:
Q  80 ctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttg 155  Q
    |||||||  |||||||| ||  ||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||    
T  44720449 ctaaaagccgcgtcaagtaagatggccaaacatgaaaaaacgtgttatgacaatcaacatgtttttataccgtttg 44720374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 3968402 - 3968478
Alignment:
Q  92 tcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcatttt 168  Q
    ||||||||||||| |||| |||||||||| |||| |||||||||| ||| |||| ||| |||||| |||| ||||||    
T  3968402 tcaagcaaagtggtcaaatatgagaaaacatgttttgacaatcaatatgcttttatacaatttgcgtttgacatttt 3968478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 2886637 - 2886690
Alignment:
Q  121 gtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    ||||||||||||||||||||||||| || |||||| |||||  |||||||||||    
T  2886637 gtgttctgacaatcaacatgtttttatatcatttgtttttgatattttcggttt 2886690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 11921218 - 11921271
Alignment:
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgctttt 160  Q
    |||||| |||||||||||||||||||||||||| ||||| |||| |||| ||||    
T  11921218 aaacattagaaaacgtgttctgacaatcaacatatttttataccgtttgttttt 11921271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 33612555 - 33612652
Alignment:
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctaca 204  Q
    ||||||||||||||||||| |||||||||||||| |||| ||| |||||  |||| || ||| || || |||| ||| || ||| ||||| |||||||    
T  33612555 aaacatgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttggcttcctaacaccggaggttgttgacattctaca 33612652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 20142753 - 20142841
Alignment:
Q  127 tgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    |||||||||||||| |||| |||||||| |||||| || ||| |||||||||  | || | ||| |||||||| |||| ||||||||||    
T  20142753 tgacaatcaacatgcttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgaccttatacatagagttcaaa 20142841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 5679392 - 5679345
Alignment:
Q  92 tcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacat 139  Q
    ||||||||||||||||||||||||||||| ||||  || |||||||||    
T  5679392 tcaagcaaagtggccaaacatgagaaaacatgttaagataatcaacat 5679345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 29808199 - 29808121
Alignment:
Q  81 taaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgctttt 160  Q
    |||||| ||| ||||| |||||  |||||||||||| | |||||| | |||||||||||| |||| ||||||||||||||    
T  29808199 taaaagttgcctcaagtaaagtcaccaaacatgagacagcgtgttataacaatcaacatg-ttttataccatttgctttt 29808121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 500430 - 500259
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||| || || |||||||||||| |||||||| ||| |  |||||||||| ||||    || |||||||| |||||||||||||||    
T  500430 atgcatgtgtagacttgagtgaggtttcaccacttgtgggattaggtgtcgggccttttacggtaggaccgacagccctaaaagttgcgtcaagcaaagt 500331  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  500330 ggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttacttttgacattttcggttt 500259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 24125231 - 24125019
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| |||||||||||| |||||| | |||    |||||||||| |||||   || |||||||| ||| ||||||||| |    
T  24125231 atgcatgtgtagacttgactggggtttcaccacttgtgggattatgcgtcgtgccttttacggtgggacaagcagccctaaaagctgcatcaagcaaaat 24125132  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    |||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| || ||| | ||| |||  |||||| ||| ||| |||||||    
T  24125131 ggccaaacatgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttcta 24125032  T
Q  203 cacagagttcaaa 215  Q
    || | ||||||||    
T  24125031 cataaagttcaaa 24125019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 35739891 - 35740102
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| ||||||||| || |||||| || || |  |||||||||| |||||   |  |||||||| || || |||||||||    
T  35739891 atgcatgtgtggacttgactggggtttcaccactagtgggattaagg-tcgggccttttacggtaggacagacatccctaaaagttgtgttaagcaaagt 35739989  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| ||| ||||||| || |||| |||| |||  ||||||  || |||||||||||    
T  35739990 ggccaaacatgagaaagcgggttctgacaatcaacatgtttttatacaattagcttttgacactttcagtttcctagcaccagagattgttgaccttcta 35740089  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  35740090 catagagttcaaa 35740102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 39434870 - 39434712
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| || ||||||||     ||||||| || |||||   ||  ||||||| |||||||||||||||    
T  39434870 atgcatgtgtgtacttgactggggtttcaccacttgtgggtttaggggtggaggcttttacagtaggacaggaagctctaaaagttgcgtcaagcaaagt 39434771  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||    
T  39434770 ggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgtttttg 39434712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 38815471 - 38815284
Alignment:
Q  29 tcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctg 128  Q
    ||||||||||| |||||||||||| |  |||||| ||| |||||   || ||||||||   || ||| |||||||||||||||||||||| |||||||||    
T  38815471 tcaccacttgtgggattaggggtcggggcttttatggtaggacagacagccctaaaagccacgccaaacaaagtggccaaacatgagaaagcgtgttctg 38815372  T
Q  129 acaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaag 216  Q
    |||||||||||| |||| ||||||||||||||| || |||| | || |||  |||||| | | ||||||||||||| |||||||||||    
T  38815371 acaatcaacatgcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacatagagttcaaag 38815284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 6592705 - 6592566
Alignment:
Q  76 agtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggtttt 175  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||  |||||||||||||| || |||| ||||     
T  6592705 agtcgtaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttc 6592606  T
Q  176 ctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    |||   ||||| ||| |||||||||| || ||||||||||    
T  6592605 ctagctccagaggttgttgaccttctgcatagagttcaaa 6592566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 25021718 - 25021931
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| ||||||| || | |||||||||||| ||||||||||||     |||||| ||  |||||  || |||||||| || ||||||||||||    
T  25021718 atgcatgtgtggacttgaccggagtttcaccacttgtgggattaggggtcgatgtttttacagtatgacatacagccctaaaagttgtgtcaagcaaagt 25021817  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||  ||| ||||||||  ||||||| ||||||||||||||||| |||||||| |||||| |||||| || || |||  |||||| ||| |||||| || |    
T  25021818 ggtgaaatatgagaaagtgtgttctcacaatcaacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggttgttgaccatcca 25021917  T
Q  203 cacagagttcaaag 216  Q
    |||| |||||||||    
T  25021918 cacaaagttcaaag 25021931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 8620013 - 8619805
Alignment:
Q  7 atgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggcc 106  Q
    |||||||||||||||||||| |||||||||||| ||||||| | ||   ||||||||| | | |||   || |||||||| ||||||||| ||| ||| |    
T  8620013 atgtgtgaacttgactggggtttcaccacttgtgggattagagatcgtgacttttacgatagaacagacagccctaaaagttgcgtcaagtaaaatggtc 8619914  T
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacaca 206  Q
    |||||||| ||| ||| || ||||||||||| || |||| ||||||||| ||||  |||||| || ||||||| |||||| ||| ||||| ||| ||| |    
T  8619913 aaacatgaaaaagcgtattttgacaatcaacgtgcttttataccatttgtttttaacatttttggctttctaacaccagaggttgttgactttcgacata 8619814  T
Q  207 gagttcaaa 215  Q
    ||| |||||    
T  8619813 gagctcaaa 8619805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 3188172 - 3187965
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtc-ctaaaagatgcgtcaagcaaag 101  Q
    |||||||||||  ||||  ||||| |||||||||||| || |||||| || |  |||||||||| |||||   || | ||||||| ||| ||||||||||    
T  3188172 atgcatgtgtggccttgtgtggggtttcaccacttgtgggtttaggg-tcggggcttttacggtaggacaggaagcctctaaaagttgcatcaagcaaag 3188074  T
Q  102 tggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttct 201  Q
    |||| ||||||||| || ||||||||||||||||||||| |||| |||||||||||||||  | |||||| || |||  | |||| ||| || |||||||    
T  3188073 tggcaaaacatgaggaagcgtgttctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttct 3187974  T
Q  202 acacagagt 210  Q
    ||| |||||    
T  3187973 acatagagt 3187965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 37517285 - 37517163
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| ||| ||||||||||||||||| ||  || ||||||| || |||||   ||  ||||||| ||| |||||||||||||||||||||||    
T  37517285 acttgactggggtttcgccacttgttggattaggcgtaggaccttttaccgtaggacagacagctctaaaagctgcatcaagcaaagtggccaaacatga 37517186  T
Q  115 gaaaacgtgttctgacaatcaac 137  Q
    ||||  |||||| ||||||||||    
T  37517185 gaaagggtgttccgacaatcaac 37517163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 8882445 - 8882372
Alignment:
Q  88 tgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||  |||||||| |||||    
T  8882445 tgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaatatgcttttaaaccatttgtttttg 8882372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 10189742 - 10189581
Alignment:
Q  7 atgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggcc 106  Q
    ||||||| |||||| ||||  |||||| |||||  ||||||||||     |||||| ||| ||||||  | ||||||||| |||| |||  ||||| | |    
T  10189742 atgtgtggacttgattgggatttcaccgcttgtgagattaggggttaaggcttttatggtaggacatacattcctaaaagttgcgccaattaaagtagtc 10189643  T
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcatttt 168  Q
    ||||| |||||| | |||||||||||||||||||||||| || ||||||| |||| ||||||    
T  10189642 aaacaagagaaagcatgttctgacaatcaacatgtttttatatcatttgcatttgacatttt 10189581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 6618383 - 6618316
Alignment:
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    |||||||||||| |||||||| |||||||||||| ||||  |||||||||||||| || |||| ||||    
T  6618383 aaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagttt 6618316  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 28196322 - 28196159
Alignment:
Q  76 agtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggtttt 175  Q
    ||||||||||  ||| ||||| |||| ||| ||||||||||||  ||||| ||| ||| ||||||||||| ||||||||| ||||| || ||| |  ||     
T  28196322 agtcctaaaaactgcatcaagtaaagcggctaaacatgagaaagtgtgttatgataataaacatgtttttataccatttgtttttgacacttttgtcttc 28196223  T
Q  176 ctaaaaccagatgtttttgaccttctacacagagttcaaa-gaacatgcacatcaatatcatgt 238  Q
    |||  |||| | ||| |||||| |||||  |||||||||| || |||||||| |||| ||||||    
T  28196222 ctagcaccataggttgttgaccatctacgtagagttcaaaggatcatgcacaacaatgtcatgt 28196159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 4073662 - 4073580
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||||||| ||| |||| |||||||| |||||| ||||||||||||| |  ||||||||||| |||| ||| |||||| ||||    
T  4073662 cctaaaagttgcatcaaacaaagtggtcaaacaagagaaaacgtgttttaccaatcaacatgattttatacaatttgcatttg 4073580  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 22589336 - 22589394
Alignment:
Q  81 taaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacat 139  Q
    |||||| ||||||||||||| ||||  ||||||||||| ||||||||||||| ||||||    
T  22589336 taaaagctgcgtcaagcaaaatggctgaacatgagaaagcgtgttctgacaaccaacat 22589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 4699983 - 4699920
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttg 155  Q
    ||||||||||||||||||||||||  || |||||||| ||||| |||||||||||  ||||||||    
T  4699983 gtcaagcaaagtggccaaacatga-taagcgtgttctcacaattaacatgtttttacaccatttg 4699920  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 10556292 - 10556339
Alignment:
Q  98 aaagtggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    ||||||| ||||||||||||||| | |||||| |||||||||||||||    
T  10556292 aaagtggtcaaacatgagaaaacatattctgaaaatcaacatgttttt 10556339  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 6792323 - 6792257
Alignment:
Q  59 tttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgtt 125  Q
    |||||||||||| |   |||| |||||| | |||||| || ||||||||||||||||||||||||||    
T  6792323 tttacggttggatagacagtcgtaaaagctacgtcaaacagagtggccaaacatgagaaaacgtgtt 6792257  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 39671170 - 39671226
Alignment:
Q  98 aaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 154  Q
    |||||||||||||  |||||| |||||| ||||||| ||||||||||| ||| ||||    
T  39671170 aaagtggccaaaccagagaaagcgtgttttgacaattaacatgtttttatacaattt 39671226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 42922109 - 42922173
Alignment:
Q  81 taaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    |||||| |||||||| |||| ||| ||||  |||||||||||||| |||||||||| ||| ||||    
T  42922109 taaaagttgcgtcaaacaaaatggtcaaatttgagaaaacgtgttttgacaatcaaaatgctttt 42922173  T

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Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 44198958 - 44198760
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| |||||||||||| |||||||| ||| || ||||||| || || ||   ||  ||||||| |||||||||||||||||||||||||||    
T  44198958 acttgactggggtttcaccacttgtgggattaggtgtcggaccttttaccgtaggtcaggcagctctaaaagttgcgtcaagcaaagtggccaaacatga 44198859  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttca 213  Q
    |||| |||||||||| |||||||||| |||| ||||||||||||||| || |||||||||  ||| ||| || | | ||||||||||||| ||||||||    
T  44198858 gaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacactttcggtttcttaacacccgaggctgttgaccttctacatagagttca 44198760  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 53785912 - 53785700
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| ||||||||| || |||||||| ||| |  ||||||| || ||| |   || ||| ||||  |||||||| || ||    
T  53785912 atgcatgtgtagacttgactggggtttcaccactagtgggattaggtgtcgggccttttaccgtaggataggcagcccttaaagccgcgtcaagtaaggt 53785813  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||||||| |||  |||||| ||| |||||||||||    
T  53785812 ggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttcta 53785713  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  53785712 catagagttcaaa 53785700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 7901061 - 7900853
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||  |  |||||||||| ||||   ||  |||||||  ||||||||||||| |    
T  7901061 atgcatgtgtggacttgactggggtttcaccacttgtgggattaggggttgggtcttttacggtaggacggatatccctaaaaactgcgtcaagcaaaat 7900962  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
     ||| ||||||||||| ||| ||||||||||||||||| |||| ||||||||| ||||| || |||||| || |||  | |||| ||| |||||||||||    
T  7900961 agccgaacatgagaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttcta 7900862  T
Q  203 cacagagtt 211  Q
    || ||||||    
T  7900861 catagagtt 7900853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 37132979 - 37133112
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| | |||||||||||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  || |||||||||  ||    
T  37132979 cctaaaagctacgtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacactttcggtttctta 37133078  T
Q  179 aaaccagatgtttttgaccttctacacagagttc 212  Q
      |||||| ||| ||||||||||||| |||||||    
T  37133079 gcaccagaggttgttgaccttctacatagagttc 37133112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 39583209 - 39583346
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||| ||| | || ||||||||| |||    
T  39583209 cctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgttttcgacactttcggtttccta 39583308  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaag 216  Q
      | || | ||| |||||||||| || |||||||||||    
T  39583309 gcatcataggttgttgaccttctgcatagagttcaaag 39583346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 52741495 - 52741628
Alignment:
Q  82 aaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaa 181  Q
    ||||| || ||||| |||| || |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||| ||||| |||  |    
T  52741495 aaaagctgagtcaaacaaattgaccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcctagca 52741594  T
Q  182 ccagatgtttttgaccttctacacagagttcaaa 215  Q
    ||||| ||| ||||||||||||| ||||||||||    
T  52741595 ccagaggttgttgaccttctacatagagttcaaa 52741628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 26772885 - 26772803
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  26772885 cctaaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttg 26772803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 3443253 - 3443429
Alignment:
Q  40 tggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacat 139  Q
    ||||||||| ||| | ||||||||| | |||||   ||||||||||| ||||||||||||| ||||||||||||| |||  || |||| |||||||||||    
T  3443253 tggattaggtgtcaggacttttacgataggacagagagtcctaaaagttgcgtcaagcaaaatggccaaacatgaaaaagtgtattctaacaatcaacat 3443352  T
Q  140 gtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaag 216  Q
    | |||| |||||||| || ||| || |||| |||| |||  || ||| ||| ||||||||||||| |||||||||||    
T  3443353 gcttttataccattttctgttgacactttcagtttcctagcactagaggttgttgaccttctacatagagttcaaag 3443429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 54508288 - 54508486
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||| ||| | | ||||||  |  ||||   || | |||| | |||||||| |||| |    
T  54508288 atgcatgtgtgtacttgattggggtttcaccacttgttggattaggtgtcaggatttttacaataagacaagcagccataaa-gttgcgtcaaacaaaat 54508386  T
Q  103 ggccaaacatgagaaaa-cgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttct 201  Q
    ||| ||||||||||||| | |||||||||||| ||||||||||| || |||||||||||| |||||| | |||||||  |||||| ||| ||||||||||    
T  54508387 ggctaaacatgagaaaaacttgttctgacaattaacatgtttttatatcatttgcttttgacatttttgattttctagcaccagaggttgttgaccttct 54508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 46940751 - 46940832
Alignment:
Q  80 ctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||| ||||||||| |||||    
T  46940751 ctaaaagatgcgtcaagcaaagtggccaaacattagaaaacatgttccgacaatcaacatgcttttataccatttgtttttg 46940832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 32546901 - 32546786
Alignment:
Q  100 agtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgacctt 199  Q
    ||||||||||||||||||| ||||||| ||||||||||||  |||| ||||||||||||||| || |||| |||| |||  |||| | | | ||||||||    
T  32546901 agtggccaaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacactttcagtttcctagcaccaaaggctgttgacctt 32546802  T
Q  200 ctacacagagttcaaa 215  Q
    ||||| ||||||||||    
T  32546801 ctacatagagttcaaa 32546786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 38146259 - 38146108
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||| | |||||  ||||| ||||| |||||| |||||||||||| || |||| | ||| ||||||  || ||||||||  || |||| ||||||    
T  38146259 atgcatgtgaggacttgcatggggtttcacgacttgtgggattaggggtcggagctttgagggtaggacatgcagccctaaaagcggcatcaatcaaagt 38146160  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 154  Q
    || |||||  |||| |||||||| ||||||||||||||||||| ||||||||    
T  38146159 ggtcaaacgcgagacaacgtgttttgacaatcaacatgtttttataccattt 38146108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 7502003 - 7502117
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatg-tttttctaccatttgcttttggcattttcggttttctaaaaccagatgt 189  Q
    |||||| ||||||| ||||||||||||| |||||||  |||||||||||| ||||| |||||||| |||||| |||||| ||||| |||  |||||| ||    
T  7502003 gtcaagtaaagtggtcaaacatgagaaagcgtgttcgaacaatcaacatgttttttataccattttcttttgacatttttggtttcctagcaccagaggt 7502102  T
Q  190 ttttgaccttctaca 204  Q
    | |||||||||||||    
T  7502103 tgttgaccttctaca 7502117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 13582712 - 13582555
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  ||||||| | || |||| ||||||| |||||||| ||| |  ||||||| || |||||   || |||||||| |||||||| ||||||    
T  13582712 atgcatgtgtagacttgaccgaggtttcaacacttgtgggattaggtgtcaggccttttaccgtaggacaagcagccctaaaagctgcgtcaatcaaagt 13582613  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgctttt 160  Q
    |  ||||||| |||||  ||||||||||||||||| ||||||| ||||||||| ||||    
T  13582612 gatcaaacataagaaagtgtgttctgacaatcaacgtgtttttataccatttgttttt 13582555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 52411903 - 52412008
Alignment:
Q  111 atgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagt 210  Q
    |||||| | ||||||||||||||||||||| |||| | ||||||||||||| || |||| | ||||||| || ||||||  ||||||||||||| |||||    
T  52411903 atgagagagcgtgttctgacaatcaacatgcttttattccatttgcttttgacactttcagctttctaacactagatgtcgttgaccttctacatagagt 52412002  T
Q  211 tcaaag 216  Q
    ||||||    
T  52412003 tcaaag 52412008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 49018166 - 49017966
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    |||||||||| ||||||||||| | |||||||||||| | |||||| |||    |||||||||| |||||   |  ||| |||| | ||| || ||||||    
T  49018166 atgcatgtgtaaacttgactggagtttcaccacttgtggaattaggtgtcgagccttttacggtaggacaagcaaccctgaaagttacgtaaaacaaagt 49018067  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    | ||||||||||||||  ||||||| ||||||||||||||||| ||||||||  ||||  || ||||||||| |||  ||| || ||| |||| ||||||    
T  49018066 gaccaaacatgagaaagtgtgttctaacaatcaacatgtttttataccattttttttttacactttcggtttcctagcacccgaggttgttgatcttcta 49017967  T
Q  203 c 203  Q
    |    
T  49017966 c 49017966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 215
Target Start/End: Complemental strand, 25325180 - 25325020
Alignment:
Q  57 cttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaac--atgtttttctaccattt 154  Q
    |||||| ||| |||||| |||| ||||||| |||||||||||||||| | |||||| | ||||||| || || ||||||||  |||||||| ||||||||    
T  25325180 cttttatggtaggacatgtagttctaaaagttgcgtcaagcaaagtgacaaaacattataaaacgtattttggcaatcaacatatgtttttataccattt 25325081  T
Q  155 gcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    |||||   || ||||| ||| |||  |||| |  || ||||||||||||| ||||||||||    
T  25325080 gctttcaacactttcgatttcctagcaccatagattgttgaccttctacatagagttcaaa 25325020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 45676778 - 45676830
Alignment:
Q  90 cgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtt 142  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  45676778 cgtcaagcaaagtgaccaagcataagaaaacgtgttctgacaatcaacatgtt 45676830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 3376675 - 3376846
Alignment:
Q  34 acttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaat 133  Q
    |||||| ||||||||||||  |||||||||||| ||| ||  | || |||||  ||||||||| ||| |||  |||||||| ||||| | |||| |||||    
T  3376675 acttgtaggattaggggtcgcaacttttacggtaggatatgcattcttaaaaactgcgtcaagaaaaatggttaaacatgataaaacatattctcacaat 3376774  T
Q  134 caacatgtttt-tctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctaca 204  Q
    |||||| |||| |  |||||||||||||| | |||| ||||| |||  || ||| ||| |||||||||||||    
T  3376775 caacatattttatagaccatttgcttttgacttttttggtttcctagcactagaggttgttgaccttctaca 3376846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 4473179 - 4473029
Alignment:
Q  88 tgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagat 187  Q
    |||||||||||||||| | |||||||| ||| |||||||| || ||||| |||||||| ||| ||||| ||||| || |||||| || |||  ||||||     
T  4473179 tgcgtcaagcaaagtgtcaaaacatgaaaaagcgtgttctaaccatcaatatgtttttatactatttgtttttgacactttcggcttcctagcaccaga- 4473081  T
Q  188 gtttttgaccttctacacagagttcaaagaa-catgcacatcaatatcatgt 238  Q
     || || |||||||||| | ||||||||||| |||||| | |||| ||||||    
T  4473080 attcttaaccttctacataaagttcaaagaatcatgcatagcaatttcatgt 4473029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 37992480 - 37992377
Alignment:
Q  58 ttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgct 157  Q
    ||||||||| |||||| ||| |||  ||| || ||||| ||||||| ||||||||||| || | ||||||||||||||||||| |||| || ||||| ||    
T  37992480 ttttacggtaggacatatagccctgcaagttgtgtcaaacaaagtgaccaaacatgaggaagcatgttctgacaatcaacatgattttatatcatttact 37992381  T
Q  158 tttg 161  Q
    ||||    
T  37992380 tttg 37992377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 29862000 - 29861944
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaactt 59  Q
    |||||||||||||||||||||||| || | |||||||| ||||||||||| ||||||    
T  29862000 atgcatgtgtgaacttgactggggtttaaacacttgttagattaggggtcggaactt 29861944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 38670887 - 38670959
Alignment:
Q  106 caaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||| ||||| ||||| || ||| || ||||||    
T  38670887 caaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttggctttcta 38670959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 5338850 - 5338634
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtct-gaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaag 101  Q
    |||||| |||| |||||| | ||| | |||||||||| ||||||||| | | || |||||||||| |||||   || ||||| || |||||||| ||||     
T  5338850 atgcatctgtggacttgatttgggttacaccacttgtgggattagggatttagagcttttacggtaggacagaaagccctaagagttgcgtcaaacaaaa 5338751  T
Q  102 tggccaaacatgagaaaacgtgtt---ctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgacct 198  Q
    | |||||||||||||||  | |||    ||||| |||||||| |||| ||| ||||||||||| || |||||| || |||  || |||  || ||||| |    
T  5338750 ttgccaaacatgagaaagtgcgttgcgttgacagtcaacatgcttttatacaatttgcttttgacactttcggcttcctagcactagagattgttgacat 5338651  T
Q  199 tctacacagagttcaaa 215  Q
    |||||| ||||||||||    
T  5338650 tctacatagagttcaaa 5338634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 35484684 - 35484754
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||||| ||||||| ||||||||||||||  |||||  ||||||||||||||||| ||| |||||| ||||    
T  35484684 gtcaagtaaagtggtcaaacatgagaaaatatgttccaacaatcaacatgtttttgtactatttgcatttg 35484754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 51234716 - 51234607
Alignment:
Q  106 caaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacac 205  Q
    ||||||||| ||| | |||| |||||| ||||||| |||| ||||||||  ||||| || |||||  ||||||  | |||| ||| |||||||||||||     
T  51234716 caaacatgaaaaagcatgttatgacaaccaacatgcttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctacat 51234617  T
Q  206 agagttcaaa 215  Q
    ||||||||||    
T  51234616 agagttcaaa 51234607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 26856755 - 26856879
Alignment:
Q  92 tcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgttt 191  Q
    ||||| ||| ||| |||| |||| ||| |||||| |||||||||||||| |||| |||||| |||||||| |  ||||| ||| |||  || |||   |     
T  26856755 tcaagtaaaatggtcaaatatgataaagcgtgttgtgacaatcaacatgcttttataccatctgcttttgacgctttcgatttcctagcactagagactg 26856854  T
Q  192 ttgaccttctacacagagttcaaag 216  Q
    ||||||||||||| |||||||||||    
T  26856855 ttgaccttctacatagagttcaaag 26856879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 38978779 - 38978915
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| || |||||||||| |||  | ||||| |||||||| || |||||||||| |||||||| ||| ||||| ||||| || ||| ||||| |||    
T  38978779 cctaaaagttgtgtcaagcaaattggttagacatgtgaaaacgtattttgacaatcaatatgtttttatactatttgtttttgacacttttggtttccta 38978878  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaa 215  Q
      ||| || |   ||||||||||||| | ||||||||    
T  38978879 gcacctgaggccgttgaccttctacatatagttcaaa 38978915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 34644769 - 34644556
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| |||||||||||| |||||||||||| || ||||||||| |  |||||||||| |||||   |  |||||||| |||||||| ||||||    
T  34644769 atgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacaagcaaccctaaaagttgcgtcaaacaaagt 34644670  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    |||||||||||||||| ||||||||||||| | ||||| |||| ||||||||| ||||| || |||||| || |||  | |||| ||| |||||||||||    
T  34644669 ggccaaacatgagaaagcgtgttctgacaacctacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttcta 34644570  T
Q  203 cacagagttcaaag 216  Q
    || ||||| |||||    
T  34644569 catagagtccaaag 34644556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 29169698 - 29169909
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||  |||||||||||| |||||||||| | |||||||| ||| |  ||||||| || |||||   || ||| |||| || |||||| || ||    
T  29169698 atgcatgtgtagacttgactggggtttcaccactt-tgggattaggtgtcgggccttttaccgtaggacagacagcccttaaagttgtgtcaagtaaggt 29169796  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||| |||  |||||| ||| || ||||||||    
T  29169797 ggccaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttcta 29169896  T
Q  203 cacagagttcaaa 215  Q
    || ||||||||||    
T  29169897 catagagttcaaa 29169909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 4861893 - 4862106
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    ||||||||||| | |||||||| | ||||||||||||||||||||||||||  || |||| ||| |||||   || | |||||| ||||||||| ||| |    
T  4861893 atgcatgtgtggatttgactggtgtttcaccacttgttggattaggggtcttgacatttatggtaggacagacagccttaaaagttgcgtcaagtaaaat 4861992  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    || ||||||||||||| ||| ||||||||| ||||||  |||| ||| ||||||||||| || ||||| ||| |||| |||| | ||| |||||||||||    
T  4861993 ggtcaaacatgagaaagcgtcttctgacaagcaacatacttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgttgaccttcta 4862092  T
Q  203 cacagagttcaaag 216  Q
    || |||||||||||    
T  4862093 catagagttcaaag 4862106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 28041043 - 28041243
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| ||||| |||||| |||||||| ||| || ||||||| || ||| |   ||  ||||||   ||||||| ||||||||||||||||||    
T  28041043 acttgactggggtttcactacttgtgggattaggtgtcggaccttttaccgtaggataggcagctctaaaatccgcgtcaaacaaagtggccaaacatga 28041142  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    ||||  |||||||||||||||||| |||||| ||||||||||||||| || ||||||||| |||  |||||| |   ||||||||||||| |||||||||    
T  28041143 gaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgaccttctacatagagttcaa 28041242  T
Q  215 a 215  Q
    |    
T  28041243 a 28041243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 19035638 - 19035479
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||  ||||||| |||| |||||||| ||| || ||||||| || || ||   || |||||||| |||||||||||||||||||||||||||    
T  19035638 acttgactgggatttcaccagttgtgggattaggtgtcggaccttttaccgtagggcaggcagccctaaaagctgcgtcaagcaaagtggccaaacatga 19035539  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    |||| ||||||||||||||||||||| |||| |||||||| |||||| || || ||||||    
T  19035538 gaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacacttacggttt 19035479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 21473123 - 21472994
Alignment:
Q  86 gatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccag 185  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || || | |||| |||  |||||    
T  21473123 gatgcgtcaagtaaaatggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttgcagtttcctagcaccag 21473024  T
Q  186 atgtttttgaccttctacacagagttcaaa 215  Q
    | | | ||||||||||||| ||||||||||    
T  21473023 aggctgttgaccttctacatagagttcaaa 21472994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 22347010 - 22346886
Alignment:
Q  91 gtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtt 190  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||  ||| |||| |||||||||| || ||||||||| |||  | |||| |||    
T  22347010 gtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacatgcgtttataccttttgcttttgacactttcggtttcctagtagcagaggtt 22346911  T
Q  191 tttgaccttctacacagagttcaaa 215  Q
     ||||||||||||||||||||||||    
T  22346910 gttgaccttctacacagagttcaaa 22346886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 45659563 - 45659751
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcct-aaaagatgcgtcaagcaaagtggccaaacatg 113  Q
    |||||||||||| |||||||||||| ||||||||  || |  ||||||| || ||||||  || ||| ||||| ||||||||| || ||||||||||| |    
T  45659563 acttgactggggtttcaccacttgtgggattaggtatcgggccttttaccgtaggacatgcagcccttaaaagctgcgtcaagtaaggtggccaaacacg 45659662  T
Q  114 agaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||| ||| |||  |||||| | | |||||||||||    
T  45659663 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctatcaccagaggctgttgaccttcta 45659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 2898832 - 2898669
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaa----cgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    |||||||||||| |||||||||||||||||||||||||||     ||||||||||||||||| | |||||| |||||||||||||||  | |||||||||    
T  2898832 cctaaaagatgcatcaagcaaagtggccaaacatgagaaagtgagcgtgttctgacaatcaata-gtttttataccatttgcttttgatactttcggttt 2898734  T
Q  175 tctaaaaccagatgtttttgaccttctacacagagttc-aaagaacatgcacatcaatatcatgt 238  Q
     |||  |||||| ||| ||||||||||||| ||||||| ||||| |||||| | |||||||||||    
T  2898733 cctagcaccagaggttgttgaccttctacatagagttcaaaagatcatgcataacaatatcatgt 2898669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 2764682 - 2764481
Alignment:
Q  3 atgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagt 102  Q
    |||||||||||||||||| || || |||||||||||| || ||||||||  |  |||||| ||| ||| |   ||||||||||| || ||||  ||||||    
T  2764682 atgcatgtgtgaacttgattgaggtttcaccacttgtgggtttaggggttggtgcttttatggtaggataggcagtcctaaaagttgtgtcagacaaagt 2764583  T
Q  103 ggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    || ||||||||||||||||||||| ||||||||||||| |||| | |||||| |||||| || |||| | || |||  | |||| ||| |||||||||||    
T  2764582 ggtcaaacatgagaaaacgtgttccgacaatcaacatgcttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgaccttcta 2764483  T
Q  203 ca 204  Q
    ||    
T  2764482 ca 2764481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 20259777 - 20259913
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    |||||||| | |||||||||||||||  ||| |||||||| |||||||||||||||||||||||||| ||||||||  | ||| || |||||||||  ||    
T  20259777 cctaaaagctacgtcaagcaaagtggttaaaaatgagaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttctta 20259876  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaa 215  Q
      |||||| ||| ||||||||||||| ||||||||||    
T  20259877 gcaccagaggttgttgaccttctacatagagttcaaa 20259913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 31737303 - 31737439
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttcta 178  Q
    ||||||||  |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||| ||||| || ||||| |||||||    
T  31737303 cctaaaagcggcgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaacatgcttttataccatttgtttttgacactttcgattttcta 31737402  T
Q  179 aaaccagatgtttttgaccttctacacagagttcaaa 215  Q
      |  ||| | | ||||| ||||||| ||||||||||    
T  31737403 gcattagaggctattgacattctacatagagttcaaa 31737439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 50314619 - 50314741
Alignment:
Q  94 aagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgttttt 193  Q
    ||||||||||| ||||||||| ||||| |||||| |||||||||||| |||| |||||||| |||||| ||||||   ||| |||| || ||||||| ||    
T  50314619 aagcaaagtggtcaaacatgacaaaacttgttctcacaatcaacatgcttttataccatttacttttgacattttttatttcctaacacaagatgttgtt 50314718  T
Q  194 gaccttctacacagagttcaaag 216  Q
    ||| ||||||| |||||||||||    
T  50314719 gactttctacatagagttcaaag 50314741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 25375762 - 25375891
Alignment:
Q  28 ttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttct 127  Q
    ||||| ||| || |||||||||||| || |||||||||| |||||   |   | ||||| |||||||||||||||| |||||||||| ||||| ||||||    
T  25375762 ttcactactcgtcggattaggggtcagagcttttacggtaggacagacaactccaaaagttgcgtcaagcaaagtgaccaaacatgacaaaacatgttct 25375861  T
Q  128 gacaatcaacatgtttttctaccatttgct 157  Q
     || |||||||||||||| |||||||||||    
T  25375862 taccatcaacatgtttttataccatttgct 25375891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 50161397 - 50161472
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 154  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| || |||||    
T  50161397 cctaaaagttgcgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacatgcttttatatcattt 50161472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 15584988 - 15584912
Alignment:
Q  92 tcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcatttt 168  Q
    ||||||||||||  |||||||  |||||||| |||||||||||||||||||| | |||||||||| |||| ||||||    
T  15584988 tcaagcaaagtgatcaaacattggaaaacgtattctgacaatcaacatgtttctataccatttgcgtttgacatttt 15584912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 42919986 - 42919921
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    |||||||| ||| |||| ||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  42919986 cctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgttctcacaatcaacatgttttt 42919921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 16500183 - 16500079
Alignment:
Q  57 cttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgc 156  Q
    |||||||||| |||||   | ||||||||| ||||||| | |||||||||||| || ||||||| |||||| ||||| ||||||  ||| ||| ||||||    
T  16500183 cttttacggtaggacagacaatcctaaaagttgcgtcacgtaaagtggccaaatataagaaaacatgttctaacaattaacatgcctttatactatttgc 16500084  T
Q  157 ttttg 161  Q
    |||||    
T  16500083 ttttg 16500079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 23044000 - 23043929
Alignment:
Q  83 aaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 154  Q
    |||| ||| |||||||||||||||||| ||||||||||  || || |||||||||||| |||| ||||||||    
T  23044000 aaagctgcatcaagcaaagtggccaaatatgagaaaacaagtactcacaatcaacatgcttttataccattt 23043929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 38731704 - 38731599
Alignment:
Q  111 atgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagt 210  Q
    |||||||| ||||||||||||||||||||  |||| ||| |||||||||||  | ||| || ||  ||  |||||| ||| || |||||||||| |||||    
T  38731704 atgagaaagcgtgttctgacaatcaacatacttttatacaatttgcttttgaaacttttggcttcttagcaccagaggttgttaaccttctacatagagt 38731605  T
Q  211 tcaaag 216  Q
    ||||||    
T  38731604 tcaaag 38731599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 36487000 - 36486904
Alignment:
Q  92 tcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatg 188  Q
    ||||| ||||||| |||| |||||||| |||||| |||||||||| || ||||| ||  ||||||||||| || ||| |||||| ||  ||||||||    
T  36487000 tcaagtaaagtggtcaaatatgagaaagcgtgttttgacaatcaatatctttttatataatttgcttttgacacttttggttttttatcaccagatg 36486904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 24177540 - 24177627
Alignment:
Q  128 gacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaaa 215  Q
    |||||||||||| ||||| ||||||||| ||||| || ||||||||| |||  | |||| | | || |||||||||| ||||||||||    
T  24177540 gacaatcaacatatttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttctacatagagttcaaa 24177627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 35387653 - 35387699
Alignment:
Q  92 tcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaaca 138  Q
    ||||||||||||||||||||||| |||  |||||||||| |||||||    
T  35387653 tcaagcaaagtggccaaacatgaaaaagtgtgttctgacgatcaaca 35387699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 7433340 - 7433268
Alignment:
Q  89 gcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttg 161  Q
    |||||||||||||||  |||| ||||||||| ||||||  | ||||||| | ||||| |||||||||| ||||    
T  7433340 gcgtcaagcaaagtgatcaaatatgagaaaatgtgttcataaaatcaacgtatttttataccatttgcatttg 7433268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 47441 - 47600
Alignment:
Q  1 aaatgcatgtgtgaacttgactggggcttcaccacttgttggattaggggtctga-acttttacggttggacatttagtcctaaaagatgcgtcaagcaa 99  Q
    ||||||| ||||| |||||| ||||| |||||||||||| ||||||||| | ||| ||||||||||| |||||  ||  |||||||| ||||||||| ||    
T  47441 aaatgcaagtgtggacttgattggggtttcaccacttgtgggattagggat-tgagacttttacggtaggacaaataaacctaaaagttgcgtcaagtaa 47539  T
Q  100 agtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgctttt 160  Q
    | |||||||||||||||||| ||||||||||| | ||||| ||||| ||||||||||||||    
T  47540 aatggccaaacatgagaaaatgtgttctgacagttaacatatttttataccatttgctttt 47600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 100 - 300
Alignment:
Q  15 acttgactggggcttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatga 114  Q
    |||||||||||| |||||||||||| |||||| | ||| |  ||||||| || |||||   || |||||||  |||||||||||||||||||||||||||    
T  100 acttgactggggtttcaccacttgtgggattaagtgtcgggccttttactgtaggacaggcagccctaaaaactgcgtcaagcaaagtggccaaacatga 199  T
Q  115 gaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttctacacagagttcaa 214  Q
    || |  | ||| |||| ||||||||| |||| |||||||||  |||| || ||| |||||||||  |||| | ||| |||||||||| || | |||||||    
T  200 gacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacacttttggttttctagtaccaaaggttgttgaccttctgcataaagttcaa 299  T
Q  215 a 215  Q
    |    
T  300 a 300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 103228 - 103108
Alignment:
Q  83 aaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttttctaaaac 182  Q
    |||| ||||||||| ||  |||||||||| |||||| ||||| ||||||||||||||| |||| ||||||||||||||| || ||||||||| |||  ||    
T  103228 aaagctgcgtcaagtaagatggccaaacacgagaaagcgtgt-ctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcac 103130  T
Q  183 cagatgtttttgaccttctaca 204  Q
    |||| | | |||||||||||||    
T  103129 cagaggctgttgaccttctaca 103108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 16307 - 16195
Alignment:
Q  33 cacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaa 132  Q
    ||||||||||||||||| || |||||||||  || |||||   |   ||||||| |||||||| |||| ||||||||||||||||||| |||||||||||    
T  16307 cacttgttggattagggatcggaacttttatagtaggacagacaacgctaaaagctgcgtcaaacaaaatggccaaacatgagaaaacatgttctgacaa 16208  T
Q  133 tcaacatgttttt 145  Q
    | |||||||||||    
T  16207 taaacatgttttt 16195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 10542 - 10364
Alignment:
Q  28 ttcaccacttgttggattaggggtctgaacttttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttct 127  Q
    ||||||||| || |||||||||||  |  ||||||| ||||||||   || |||||||| ||||||||| ||| ||||||||||||| ||  ||||||||    
T  10542 ttcaccactcgtgggattaggggttggggcttttacagttggacaagcagccctaaaagttgcgtcaagtaaaatggccaaacatgataatgcgtgttct 10443  T
Q  128 gacaa----tcaacatgtttttctaccatttgcttttggcattttcggttttctaaaaccagatgtttttgaccttcta 202  Q
    |||||    |||||||| |||| ||||||||||||||| || ||  || || |||  |||||| ||| |||||||||||    
T  10442 gacaatcaatcaacatgcttttataccatttgcttttgacacttgtggcttcctagcaccagaggttgttgaccttcta 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 49538 - 49447
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcg 170  Q
    |||||||| ||| |||| |||||||| ||||  ||||||| |||||||||||||||||| || |||| ||||||||||||||| || |||||    
T  49538 cctaaaagttgcatcaaacaaagtggtcaaatgtgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacactttcg 49447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 8525 - 8573
Alignment:
Q  108 aacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgc 156  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  8525 aacatgagaaaacatgttctgacaatcaacatgtttttataccatttgc 8573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 18345 - 18410
Alignment:
Q  79 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgttttt 145  Q
    |||||||| ||| |||| ||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  18345 cctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgttctcacaatcaacatgttttt 18410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 7701 - 7634
Alignment:
Q  107 aaacatgagaaaacgtgttctgacaatcaacatgtttttctaccatttgcttttggcattttcggttt 174  Q
    |||||||||||| |||||||| |||||||||||| ||||  |||||||||||||| || |||| ||||    
T  7701 aaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagttt 7634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 4300 - 4366
Alignment:
Q  59 tttacggttggacatttagtcctaaaagatgcgtcaagcaaagtggccaaacatgagaaaacgtgtt 125  Q
    |||||||||||| |   |||| |||||| | |||||| || ||||||||||||||||||||||||||    
T  4300 tttacggttggatagacagtcgtaaaagctacgtcaaacagagtggccaaacatgagaaaacgtgtt 4366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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