View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_56 (Length: 260)
Name: NF18757_low_56
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 37501893 - 37502125
Alignment:
| Q |
17 |
gattgatgcatcccatttttctttaaaagcatgagtaattctacaagttgaagtttatttcgtccactattataatctaatatgtggaaagtcactttat |
116 |
Q |
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| T |
37501893 |
gattgatgcatcccatttttctctaaaagcatgaataattctacaagttgaagtttatttcgtccactattataatctaatatgtggaaagtcactttat |
37501992 |
T |
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| Q |
117 |
aaaataaatttttaatttgttatttcttcccatacctttaacatgttgagtttttactatttaatgtataaaagaatcaaatatataagcattatannnn |
216 |
Q |
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| T |
37501993 |
aaaataaatttttaatttgttatttcttcccatacctttaacatgttgagtttttactatttaatgtataaacgaatcaaatatataagaattatatttt |
37502092 |
T |
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| Q |
217 |
nnnactatgaaattgtatgatttgtttaatatt |
249 |
Q |
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| T |
37502093 |
tttactatgaaatcgtatgatttgtttaatatt |
37502125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 37506565 - 37506647
Alignment:
| Q |
61 |
aagttgaagtttatttcgtccactattataatctaatatgtggaaagtcactttataaaataaatttttaatttgttatttct |
143 |
Q |
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| T |
37506565 |
aagttgaagtttatttcgtccgctaatgcaatctaatatttgacgagtcactttatagaatgattttttagttttttatttct |
37506647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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