View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_57 (Length: 258)
Name: NF18757_low_57
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 7488365 - 7488596
Alignment:
| Q |
11 |
catagggttttgtttcatgaaggatcatgagattaggactgtcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattcca |
110 |
Q |
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| T |
7488365 |
catagggttttgtttcatgaaggatcatgagattaggactatcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattcca |
7488464 |
T |
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| Q |
111 |
agaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaattcatcttctctgatatc |
210 |
Q |
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| T |
7488465 |
agaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaattcatcttctctgatatc |
7488564 |
T |
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| Q |
211 |
ccttctgagctcaatttttcaactgttgaagt |
242 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
7488565 |
ccttctaagctcaatttttcaactgttgaagt |
7488596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 7475563 - 7475700
Alignment:
| Q |
73 |
cttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcag |
172 |
Q |
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| T |
7475563 |
cttttcagaaaggtgggggtctgaataagatcattccaagaacgttgaacaagtctaaagctcatcaatgactttaatggcagccacactaaaatctcaa |
7475662 |
T |
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| Q |
173 |
tctctaaatctattcctaaattcatcttctctgatatc |
210 |
Q |
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| T |
7475663 |
tctctaaatctattcctaaactcatcttctccgatatc |
7475700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 7873275 - 7873146
Alignment:
| Q |
56 |
acatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatctaaaacccatcaatgaatttagaggaag |
155 |
Q |
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||||||| || ||||| ||||||| |||||| || |||||| |||||||||||||||| |||| |||||||||||||| |||||||| |||||| |||| |
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| T |
7873275 |
acatgttcatctgccttcttttcataaaggtaggtttctgaataagatcattccaagaacgttcaacacatctaaaacgaatcaatgactttagaagaag |
7873176 |
T |
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| Q |
156 |
ccacaccaaaatctcagtctctaaatctat |
185 |
Q |
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| T |
7873175 |
tcacaccaaaatctccgtctctaaatctat |
7873146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 6943659 - 6943480
Alignment:
| Q |
30 |
aaggatcatgagattaggactgtcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatcta |
129 |
Q |
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| T |
6943659 |
aaggatcatgagactaggactatcatgcatattcatgtgccgccgtttcagaaaggcagggctctgaacaagaacattccaagatcgttgaacacatctg |
6943560 |
T |
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| Q |
130 |
aaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaattcatcttctctgatat |
209 |
Q |
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||| ||||||||| ||||| || |||||| |||||||||| ||||||||||||| |||||||||| | |||| ||||| |
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| T |
6943559 |
aaaagcatcaatgactttagtggcagccacgccaaaatctccgtctctaaatctaaccctaaattcaccatctccgatat |
6943480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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