View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_70 (Length: 235)
Name: NF18757_low_70
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_70 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 43396786 - 43396569
Alignment:
| Q |
18 |
cttttcaaggggaaggatatgtgggggtgtgccttgaatgtggg-tgaagaagaagagatgtattgtggttaatgtttattctaaatgtgatttggtggc |
116 |
Q |
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| T |
43396786 |
cttttcaaggggaaggatatgtgggggtgtgccttgaatggggggtgaagaagaagagatgtattgtggttaatgtttattctaaatgtgatttggtggc |
43396687 |
T |
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| Q |
117 |
taagaggaggatgtgggaggcgttagtggaggagcgtgctaatagaggtgaaggggagtggtgtattcttggagattttaatgtggtgtgccggagagat |
216 |
Q |
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| T |
43396686 |
taagag-aggatgtgggaggcgttagtggaggagcgtgctaatagaggtgaaggggcgtggtgtattcttggagattttaatgtggtgtgccggagagat |
43396588 |
T |
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| Q |
217 |
gaaagaaggggaattaatg |
235 |
Q |
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| T |
43396587 |
gaaagaaggggaattaatg |
43396569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 8507757 - 8507639
Alignment:
| Q |
18 |
cttttcaaggggaaggatatgtgggggtgtgccttgaatgtgg-gtgaagaagaagagatgtattgtggttaatgtttattctaaatgtgatttggtggc |
116 |
Q |
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| T |
8507757 |
cttttcaaggggaaggttatgtgggagtgtgtttagattggggtgtggagaatactagatgtattgtgatcaatgtgtattctaagtgtgatttggtggc |
8507658 |
T |
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| Q |
117 |
taagaggaggatgtgggag |
135 |
Q |
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| T |
8507657 |
taaaaggaggttgtgggag |
8507639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 25318408 - 25318447
Alignment:
| Q |
18 |
cttttcaaggggaaggatatgtgggggtgtgccttgaatg |
57 |
Q |
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| T |
25318408 |
cttttcaaggggaaggatatgtgggggtgtgccttgaatg |
25318447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 8248368 - 8248300
Alignment:
| Q |
66 |
gaagaagagatgtattgtggttaatgtttattctaaatgtgatttggtggctaagaggaggatgtggga |
134 |
Q |
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| T |
8248368 |
gaagaatatatgtattttgataaatgtttatgctaaatgtgatttggcggccaagaggagagtgtggga |
8248300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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