View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_low_74 (Length: 228)

Name: NF18757_low_74
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_low_74
NF18757_low_74
[»] chr7 (2 HSPs)
chr7 (1-136)||(3800200-3800335)
chr7 (3-120)||(3789771-3789888)
[»] chr4 (1 HSPs)
chr4 (138-210)||(44523853-44523925)
[»] chr2 (2 HSPs)
chr2 (141-209)||(41322196-41322264)
chr2 (139-210)||(37726169-37726240)
[»] chr5 (1 HSPs)
chr5 (140-210)||(12503202-12503272)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3800335 - 3800200
Alignment:
Q  1 ataagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800335 ataagatcttatctacgccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgc 3800236  T
Q  101 aatgccaaaacgagatcatggaatatttgatgttga 136  Q
    |||||||||||||||||||| |||||||||||||||    
T  3800235 aatgccaaaacgagatcatgaaatatttgatgttga 3800200  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 3789771 - 3789888
Alignment:
Q  3 aagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaa 102  Q
    |||||||||||||| || |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||    
T  3789771 aagatcttatctacgccgcgccatgggaagtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaa 3789870  T
Q  103 tgccaaaacgagatcatg 120  Q
    ||| |||| |||||||||    
T  3789871 tgcgaaaaggagatcatg 3789888  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 44523853 - 44523925
Alignment:
Q  138 ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44523853 ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtc 44523925  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 41322264 - 41322196
Alignment:
Q  141 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41322264 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgt 41322196  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 37726240 - 37726169
Alignment:
Q  139 tctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtc 210  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  37726240 tctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtc 37726169  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 12503202 - 12503272
Alignment:
Q  140 ctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtc 210  Q
    ||||||||| |||||||| |||||| ||||||||| || ||| |||||||||| |||||||||||||||||    
T  12503202 ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtc 12503272  T

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