View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_79 (Length: 207)
Name: NF18757_low_79
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_79 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 53416129 - 53415959
Alignment:
| Q |
17 |
atgagagaaaggacttcagatgtgtacatttgaagaaagnnnnnnnnncacaaattccgtgccatccataagtacatttctgaaaatatgtgttatcaat |
116 |
Q |
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| T |
53416129 |
atgagagaaaggacttcagatgtgtacatttgaagaaa--aaaaaaaacacaaattccgtgccatccataagtacatttctgaaaatatgtgttatcaat |
53416032 |
T |
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| Q |
117 |
tgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat |
189 |
Q |
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| T |
53416031 |
tgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat |
53415959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 53412311 - 53412233
Alignment:
| Q |
111 |
atcaattgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat |
189 |
Q |
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| T |
53412311 |
atcaattgtaatcataacaagtgaagaagtccagaccttttcaataggaacctcatgccgcttgcaccaggcaactgat |
53412233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 53366501 - 53366577
Alignment:
| Q |
111 |
atcaattgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactg |
187 |
Q |
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| T |
53366501 |
atcaattgtaatcataacaagtgaagaagtctagaccttttcgataggaacctcatgccgtttgcaccaggcaactg |
53366577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 53366234 - 53366319
Alignment:
| Q |
17 |
atgagagaaaggacttcagatgtgtacatttgaagaaagnnnnnnnnncacaaattccgtgccatccataagtacatttctgaaaatatgtgt |
109 |
Q |
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| T |
53366234 |
atgagagaaaggacttcaggtgtgtacatttgaaaaaa-------aaacacaaattttgtgccatccatgagtatatttctgaaaatatgtgt |
53366319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 14923434 - 14923374
Alignment:
| Q |
129 |
aagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat |
189 |
Q |
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| T |
14923434 |
aagtgaagaagtccagaccttttcaataggaacctcgtgccgcttgcaccaggcaactgat |
14923374 |
T |
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Target: scaffold0172 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 2478 - 2520
Alignment:
| Q |
145 |
accttttcaataggaacctcatgccgcttgcaacaggcaactg |
187 |
Q |
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| T |
2478 |
accttttcaatgggaacctcgtgccgcttgcaccaggcaactg |
2520 |
T |
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