View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_8 (Length: 558)
Name: NF18757_low_8
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 198 - 549
Target Start/End: Original strand, 13356958 - 13357321
Alignment:
| Q |
198 |
aattatacgatcttacaaccaccgggagatct-acacgatcctaaaagttgaatttttcttagtcatgttcactctttgacaccttaaacaagtctttta |
296 |
Q |
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| T |
13356958 |
aattatacgatcttacaaccactgggagatcttacacgatcctaaaagttcaatttttcttagccaagtttactctttgacaccttaaactattttttaa |
13357057 |
T |
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| Q |
297 |
acccattttatactcgaaaactgatttttgagacgcaatacaggatcttacgatccaacat-----------gcttcccccttcatggtccttagtagga |
385 |
Q |
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| T |
13357058 |
acccactttatactcaaaaaccgatttttgagacgcagtacaagatcttacgatcctacatattacgatcatgcttcccccttcatggtccttagtagga |
13357157 |
T |
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| Q |
386 |
tttcactcctgacaactttgtatattatcttgggtagaaaactttgctttcaaatggtgctttacctgcattttcaaatattatgaaatttctaccaaat |
485 |
Q |
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| T |
13357158 |
tttcactcctgacaactttgtatattatcttgggtagaaaactttgctttcgaatggtgctttacctgcattttcaaattttattaatttcctaccaaat |
13357257 |
T |
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| Q |
486 |
taactgatagctcacaagcatacccacaagagtcttgtttcaagtccttttattgttgagaata |
549 |
Q |
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| T |
13357258 |
taactgatagctcacaagcatacccacaacagtcttaattcaaggccttttattgttgagaata |
13357321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 13340062 - 13340117
Alignment:
| Q |
45 |
aggtatgtttaaatgccttttacatttcttatgtttatgtttaatcattctaatat |
100 |
Q |
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| T |
13340062 |
aggtatgtttaaatgccctttacatttcttatggctatgtttaatcattctcatat |
13340117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 13340136 - 13340227
Alignment:
| Q |
95 |
taatatgaaatcaatttatttttggatttttacaccgttaaatgcttagtacatttattatggttaaaaatttgaaattagattatatttca |
186 |
Q |
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| T |
13340136 |
taatatgaaatcaatttcttgttggatttgtatacgtttaaatgccttttacatttcttatggatagaaatatgaaattagattatatttca |
13340227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 13378270 - 13378232
Alignment:
| Q |
52 |
tttaaatgcc-ttttacatttcttatgtttatgtttaat |
89 |
Q |
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| T |
13378270 |
tttaaatgcccttttacatttcttatgtttatgtttaat |
13378232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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