View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_low_82 (Length: 202)

Name: NF18757_low_82
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_low_82
NF18757_low_82
[»] chr1 (4 HSPs)
chr1 (1-85)||(33243885-33243969)
chr1 (1-85)||(33264058-33264142)
chr1 (150-185)||(33243785-33243820)
chr1 (150-185)||(33263958-33263993)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33243969 - 33243885
Alignment:
Q  1 cccgcgaggcggtttcgggcgattttgttcattccagcgttttaaccatgtatcagtgcagaaactcttaaggtgaaaaatggga 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243969 cccgcgaggcggtttcgggcgattttgttcattccagcgttttaaccatgtatcagtgcagaaactcttaaggtgaaaaatggga 33243885  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33264142 - 33264058
Alignment:
Q  1 cccgcgaggcggtttcgggcgattttgttcattccagcgttttaaccatgtatcagtgcagaaactcttaaggtgaaaaatggga 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33264142 cccgcgaggcggtttcgggcgattttgttcattccagcgttttaaccatgtatcagtgcagaaactcttaaggtgaaaaatggga 33264058  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 33243820 - 33243785
Alignment:
Q  150 aagaagaagaaattgtggtgaagaaacggatagaat 185  Q
    ||||||||||||||||||||||||||||||||||||    
T  33243820 aagaagaagaaattgtggtgaagaaacggatagaat 33243785  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 33263993 - 33263958
Alignment:
Q  150 aagaagaagaaattgtggtgaagaaacggatagaat 185  Q
    ||||||||||||||||||||||||||||||||||||    
T  33263993 aagaagaagaaattgtggtgaagaaacggatagaat 33263958  T

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