View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_high_1 (Length: 730)
Name: NF18758_high_1
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 32368571 - 32368393
Alignment:
| Q |
9 |
catcatcaccatcataaactgcttcctgtattttccatatgatacactgctacactgtgccaactcctcagcaacttcataagttatgaattgagtattt |
108 |
Q |
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| T |
32368571 |
catcatcatcaacatcaactgcttcctgtattttcgatatgatacactcatacactgtgccaactcgtcaacaacttcataagttacagattgagtattt |
32368472 |
T |
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| Q |
109 |
attacgaagattaggagaattttcgcgttgtaaagggtaccc-tttgatggattgaagaaaccctaatttggttgaaca |
186 |
Q |
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| T |
32368471 |
attacgaagattagaaggattttcgcatcgtaaagggtacccttttgatggattgaagaaaccctaatttggttgaaca |
32368393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 32370552 - 32370379
Alignment:
| Q |
13 |
atcaccatcataaactgcttcctgtattttccatatgatacactgctacactgtgccaactcctcagcaacttcataagttatgaattgagtatttatta |
112 |
Q |
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| T |
32370552 |
atcatcatcatcaactgcttcctgtattttcgatatgatacactcatacattgtgccaactcctcagcaacttcataagttacgaattgagtatttatta |
32370453 |
T |
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| Q |
113 |
cgaagattaggagaattttcgcgttgtaaagggtacc-ctttgatggattgaagaaaccctaatttggttgaac |
185 |
Q |
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| T |
32370452 |
caaagattagaaggattttcgcatcataaagggtaccattttgatggattgaagaaaccctaatttggttgaac |
32370379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 32370881 - 32370759
Alignment:
| Q |
25 |
aactgcttcctgtattttccatatgatacactgctacactgtgccaactcctcagcaacttcataagttatgaattgagtatttattacgaagattagga |
124 |
Q |
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| T |
32370881 |
aactgcttcctgtattttccatatgatacactcctacactgtgccaactcctcagcaatttcataagttacgaattgagtatttattacgaagattagga |
32370782 |
T |
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| Q |
125 |
gaattttcgcgttgtaaagggta |
147 |
Q |
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| T |
32370781 |
ggattttcgcgttgtaaagggta |
32370759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 32368277 - 32368190
Alignment:
| Q |
303 |
ttagggtaccttgcattgtcttccatgtctcgtccattaaattggagaaaccttaatttggttgaacaagaagcctttgagctataac |
390 |
Q |
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| T |
32368277 |
ttagggtaccttgcattgtcttccatgtctcgtccattaaattggagaaaccctaatttggttgaacaataagcctttgagctataac |
32368190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 32370263 - 32370178
Alignment:
| Q |
302 |
gttagggtaccttgcattgtcttccatgtctcgtccattaaattggagaaaccttaatttggttgaacaagaagcctttgagctat |
387 |
Q |
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| T |
32370263 |
gttagagtaccttgcattgtcttccatgtctcgtccattaaattgaagaaaccctaatttggttgaacaagaagcctttgagctat |
32370178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 647 - 716
Target Start/End: Complemental strand, 32367921 - 32367852
Alignment:
| Q |
647 |
tgttgtagagtctatataatgaaacctctactgtaattaatgttatataacttatataatgaaacatttg |
716 |
Q |
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| T |
32367921 |
tgttgtagagtctatataatgaaacctctactgtaattaatgttatatagcttatataatgaaacatttg |
32367852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 32368034 - 32367909
Alignment:
| Q |
510 |
taagttagtatgagtatattatttaaatattgaaataacannnnnnn---aaggaaaatattgaaataacatagtttcttatgtttgggcatattctatt |
606 |
Q |
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| T |
32368034 |
taagttagtatgagtatattatttaaatattgaaataacattttttttttaaggaaaatatttaaataacatagtttcttatgtttcggcatattctatt |
32367935 |
T |
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| Q |
607 |
ata-----attaatgttgtagagtct |
627 |
Q |
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| T |
32367934 |
ctattgtaattaatgttgtagagtct |
32367909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 650 - 715
Target Start/End: Complemental strand, 32369888 - 32369823
Alignment:
| Q |
650 |
tgtagagtctatataatgaaacctctactgtaattaatgttatataacttatataatgaaacattt |
715 |
Q |
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| T |
32369888 |
tgtagagtctatataatgaaacctctactataattaatgttatatagcttatataatgaaacattt |
32369823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 510 - 606
Target Start/End: Complemental strand, 32370005 - 32369905
Alignment:
| Q |
510 |
taagttagtat--gagtatattatttaaatattgaaataacannnnnnn--aaggaaaatattgaaataacatagtttcttatgtttgggcatattctat |
605 |
Q |
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| T |
32370005 |
taagttagtatacgagtatattatttaaatattgaaataacatttttttttaaggaaaatattaaaataacatagtttcttatgtttcggcatattctat |
32369906 |
T |
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| Q |
606 |
t |
606 |
Q |
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| T |
32369905 |
t |
32369905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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