View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_high_2 (Length: 635)
Name: NF18758_high_2
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 328 - 575
Target Start/End: Original strand, 35823047 - 35823289
Alignment:
| Q |
328 |
ttataattataggatcaaatttaggagttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgat |
427 |
Q |
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| T |
35823047 |
ttataattataggatcaaatttagaagttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgat |
35823146 |
T |
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| Q |
428 |
tcaatttcaattttccctttcttattattaagatgtcaggcttagcttagcttgcacaaagtgcttctccagttcatgtctacatcggcaccaagaagaa |
527 |
Q |
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| T |
35823147 |
tcaatttcaattttccctttcttattattaagatgtcag-----gcttagcttgcacaaagtgcttctccagttcatgtctacatcggcaccaagaagaa |
35823241 |
T |
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| Q |
528 |
accactttcataagattattatcgttttaccatataccatatattgca |
575 |
Q |
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| T |
35823242 |
accactttcataagattattatcgttttcccatataccatatattgca |
35823289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 35822720 - 35822859
Alignment:
| Q |
192 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttgatgttctttttg |
291 |
Q |
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| T |
35822720 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttggtgttctttttg |
35822819 |
T |
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| Q |
292 |
tattttccacatgacatcacttcacttcaactttatttat |
331 |
Q |
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| T |
35822820 |
tattttccacatgacatcacttcacttcaactttatttat |
35822859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 35822453 - 35822583
Alignment:
| Q |
1 |
caagtatattaaaaatgacaaaactatacccaaatatgggtataacaaaactctctagcatacatatgtcttgaagtagtttacatataaaaatttaatt |
100 |
Q |
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| T |
35822453 |
caagtatattaaaaatgacaaaactatacccaaatatgggtataacgaaactctctagcatacatatgtcttgaagtagtttacacataaaaatttaatt |
35822552 |
T |
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| Q |
101 |
tttggatggtacaacactcactacctcataa |
131 |
Q |
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| T |
35822553 |
tttggatggtacaacactcactacctcataa |
35822583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 615
Target Start/End: Original strand, 35823353 - 35823391
Alignment:
| Q |
577 |
ccaatcacattaatttttcttcatcacacgtgtcttata |
615 |
Q |
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| T |
35823353 |
ccaatcacattaatttttcttcatcacacgtgtcttata |
35823391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 35822667 - 35822695
Alignment:
| Q |
127 |
cataatatatattcaaataagaaatgtct |
155 |
Q |
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| T |
35822667 |
cataatatatattcaaataagaaatgtct |
35822695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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