View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_high_3 (Length: 559)
Name: NF18758_high_3
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 184 - 544
Target Start/End: Original strand, 12952317 - 12952677
Alignment:
| Q |
184 |
agaagaaagaagcgaaaatttcttcatcttcatggaacagacatggcggtgttgttgctccgattgcagtttctcaagcgcggcgggaattcggtaaaga |
283 |
Q |
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| T |
12952317 |
agaagagagaagcgaaaatgtcttcatcttcatggaacagacatggcggtgttgttgctccgattgcagttcagcaagcgcggcaggaattcggtaaaga |
12952416 |
T |
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| Q |
284 |
aactcttttttcttccttttctttcctaatttatgtatgattattgagtattatattgtaattcttcaatttagtttctgtgatactgtttttgaattgg |
383 |
Q |
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| T |
12952417 |
aactcttttttcttccttttatttcctaatttatgtatgattattgagtattgtattgtaattcttcaatttagtttctgtgatactgtttttgaattgt |
12952516 |
T |
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| Q |
384 |
attttgggataattgagcaattttctgtgatagagttcatatacatgatttatcgcacaatttctattgatggatttatctgtaagtatgatactagaat |
483 |
Q |
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| T |
12952517 |
attttaggataattgagcaattttctgtgatagagttcatatacaatatttatcgcacaacttctgttgatggatttgtctgtaagtatgatactagaat |
12952616 |
T |
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| Q |
484 |
cgatattagttgattgagattactaaactaattcaaaaactgaaaagtaatttttacatca |
544 |
Q |
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| T |
12952617 |
cgatattagttgattgagatgagtaaactaattcacaaactgaaaagtaatttttacatca |
12952677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 12952195 - 12952319
Alignment:
| Q |
17 |
cagttccgtcgtttctctattttcatctctgatcttctttcagcttcttctccatcggttctcatctaccgtttccgattgatctctcgttttcaaataa |
116 |
Q |
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| T |
12952195 |
cagttccgtcgtttctctattttcttctctgatcttctttcagcttcttctccatcgattctcatataccgtttccgattgatctctcgttttcaaataa |
12952294 |
T |
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| Q |
117 |
atagagatgcaacggtgaagataga |
141 |
Q |
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| T |
12952295 |
atagagatgcaacggtgaagataga |
12952319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 478 - 544
Target Start/End: Original strand, 2363284 - 2363350
Alignment:
| Q |
478 |
tagaatcgatattagttgattgagattactaaactaattcaaaaactgaaaagtaatttttacatca |
544 |
Q |
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| T |
2363284 |
tagaatctatcttaattgattgagattagtaaacaaattcaaaaactgaaaagtaattttcacatca |
2363350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 2363245 - 2363278
Alignment:
| Q |
394 |
aattgagcaattttctgtgatagagttcatatac |
427 |
Q |
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| T |
2363245 |
aattgagcaattttctgtgatagagttcatatac |
2363278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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