View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_high_5 (Length: 336)
Name: NF18758_high_5
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 3646496 - 3646186
Alignment:
| Q |
25 |
gcggagaaattgaacgctagtttataataataatgataatttaggagtttaattttgatagttttattcataatttaatagggtgttgctctcttgatga |
124 |
Q |
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| T |
3646496 |
gcggagaaattgaacgctagtttataataataatgataatttaggagtttaattttgatagttttattcataatttaatagggtgttgctctcttgatga |
3646397 |
T |
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| Q |
125 |
tatcaactataattccaagcctaagtcctccaacatgcaaggaacatacaacttgtgtaaaagcaaacaatacacagttaacagttctgtttttagcgct |
224 |
Q |
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| T |
3646396 |
tatcaactataattccaagcctaagtcctccaacatgcaaggaacatacaacttgtgtaaaagcaaacaatacacagttaacagttctgtttttagcgct |
3646297 |
T |
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| Q |
225 |
ttatgtcactgcacttggcacagggggtttaaaatccagtgtccctggctttggttcagatcaatttgatgctactgataaagaagagaagaaacatatg |
324 |
Q |
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| T |
3646296 |
ttatgtcactgcacttggcacagggggtttaaaatccagtgtccctggctttggttcagatcaatttgatgctactgataaagaagagaagaaacatatg |
3646197 |
T |
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| Q |
325 |
gttaaatttct |
335 |
Q |
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| T |
3646196 |
gttaaatttct |
3646186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 3658738 - 3658659
Alignment:
| Q |
216 |
tttagcgctttatgtcactgcacttggcacagggggtttaaaatccagtgtccctggctttggttcagatcaatttgatg |
295 |
Q |
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| T |
3658738 |
tttagcactttatatcacagccctcggcactggcggtctaaaatctagtgtctctggctttggttccgatcaatttgatg |
3658659 |
T |
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