View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_low_11 (Length: 248)
Name: NF18758_low_11
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 39883529 - 39883291
Alignment:
| Q |
14 |
atgatccatctatattaagtttgaatcgcccaggaggatggacttaattaa----ttgatgtgcattattgattccctagatgccttgggcgcttgcaat |
109 |
Q |
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| T |
39883529 |
atgatccatctatattaagtttgaatcgcccaagaggatggacttaattatgcttttgatgtgcattattgattccctagatgccttgggcgcttgcaat |
39883430 |
T |
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| Q |
110 |
tttgttataatattatgacgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgttcatgtccttccaaag |
209 |
Q |
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| T |
39883429 |
tttgttacaatatcatgacgtgattgttaaccgaactccatagtttatctcccatatatgactgatgagaaaatatgagcatgttcatgtccttccaaag |
39883330 |
T |
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| Q |
210 |
aatccacaccataactccaaaaaatatagaccaatctca |
248 |
Q |
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| T |
39883329 |
agtccacaccataactccaaaaaatatagaccaatctca |
39883291 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 24352009 - 24352080
Alignment:
| Q |
172 |
tgatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaa |
243 |
Q |
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| T |
24352009 |
tgatgagaaaatatgaacatgttcctatcattctaaagaacccacaccataacttcaaagaagatagaccaa |
24352080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 42874702 - 42874636
Alignment:
| Q |
127 |
acgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgt |
193 |
Q |
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| T |
42874702 |
acgttattgttaactgaattccatagtttatcttccatatttgaccaataagaaaatatgagcatgt |
42874636 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 42502497 - 42502550
Alignment:
| Q |
173 |
gatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactc |
226 |
Q |
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| T |
42502497 |
gatgagaaaatatgagcatatttatatccttccaaacaacccacaccaaaactc |
42502550 |
T |
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