View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_low_13 (Length: 238)
Name: NF18758_low_13
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 47744755 - 47744961
Alignment:
| Q |
16 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
115 |
Q |
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| T |
47744755 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgacgcagtgatttcaatatcattattttcatcttcttttat |
47744854 |
T |
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| Q |
116 |
atcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaacattgtacaaaggcttccatttttctttgccttctgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47744855 |
atcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaacattgtacaaaggcttccatttttctttgccttctgt |
47744954 |
T |
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| Q |
216 |
ctatttt |
222 |
Q |
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||||||| |
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| T |
47744955 |
ctatttt |
47744961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 47716962 - 47717121
Alignment:
| Q |
16 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |
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| T |
47716962 |
tattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcatcttc---tat |
47717058 |
T |
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| Q |
116 |
atcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaa |
178 |
Q |
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| T |
47717059 |
atcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaa |
47717121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 47712207 - 47712335
Alignment:
| Q |
16 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
115 |
Q |
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||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||| ||| |
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| T |
47712207 |
tattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcagcgatttcaatatcatcattatcattttcttctat |
47712306 |
T |
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| Q |
116 |
atcttcaaacattgtacaaggcatgttag |
144 |
Q |
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| T |
47712307 |
ttcttcaaacatgatacaaggcatgttag |
47712335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 47759105 - 47759233
Alignment:
| Q |
16 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagtgatttcaatatcattatattcatcttcttttat |
115 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| || |||||||||| || || ||||||| || |
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| T |
47759105 |
tattagcttcagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgat |
47759204 |
T |
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| Q |
116 |
atcttcaaacattgtacaaggcatgttag |
144 |
Q |
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|||||||| || ||||||||||||||| |
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| T |
47759205 |
ttcttcaaaaatgatacaaggcatgttag |
47759233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 47712351 - 47712379
Alignment:
| Q |
146 |
aaaatatgctaatatctaatttttaaaat |
174 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47712351 |
aaaatatgctaatatctaatttttaaaat |
47712379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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