View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18758_low_14 (Length: 228)

Name: NF18758_low_14
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18758_low_14
NF18758_low_14
[»] chr6 (1 HSPs)
chr6 (15-210)||(8159240-8159435)
[»] chr3 (1 HSPs)
chr3 (51-210)||(4084080-4084252)
[»] chr8 (7 HSPs)
chr8 (51-210)||(44301308-44301486)
chr8 (51-197)||(44312207-44312368)
chr8 (143-210)||(43896073-43896140)
chr8 (137-210)||(44306520-44306594)
chr8 (13-48)||(44312137-44312172)
chr8 (14-48)||(43895856-43895890)
chr8 (16-45)||(44306284-44306313)
[»] chr4 (2 HSPs)
chr4 (134-210)||(18701668-18701744)
chr4 (101-134)||(18701618-18701651)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 8159435 - 8159240
Alignment:
Q  15 cagagataggatcaagtgttaaatgcagaacacagtatcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8159435 cagagataggatcaagtgttaaatgcagaacacagtatcaataattaagcaacagattcagcataaaaaataagttataaataagaaacaaaccattgca 8159336  T
Q  115 aagctaataaaccaaaccaattatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcagga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159335 aagctaataaaccaaaccaattatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcagga 8159240  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 51 - 210
Target Start/End: Original strand, 4084080 - 4084252
Alignment:
Q  51 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaacca-------------atta 137  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||| || ||||||||             || |    
T  4084080 atcaataattaagcaacaaattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaagccaaaccaactggtaagtaggatca 4084179  T
Q  138 tttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcagga 210  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  4084180 tttctctggaatgaatccattcacaccatttgaaaatttctctcctgaatcctttgagaccgaataagcagga 4084252  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 210
Target Start/End: Original strand, 44301308 - 44301486
Alignment:
Q  51 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaacca--------------att 136  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||| |||||||||| || |||||| |              ||     
T  44301308 atcaataattaagcagcagatttaccataaaaaataagttataaataagcaacaaaacatagcaaagctaacaagccaaacaaactgggtaagtaggatc 44301407  T
Q  137 atttctc-----tagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcagga 210  Q
    ||||| |     | |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  44301408 atttcactggaatggaatgaatcaattcacaccatttgaaaatttctctccagaatcttttgacaccgaataagtagga 44301486  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 44312207 - 44312368
Alignment:
Q  51 atcaataattaagcaacagattcaccat-aaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaacca--------------at 135  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||  ||| || ||| || ||||||||              ||    
T  44312207 atcaataattaagcaacaaattcaccataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggat 44312306  T
Q  136 tatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagac 197  Q
     | |||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  44312307 caattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagac 44312368  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 43896073 - 43896140
Alignment:
Q  143 ctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcagga 210  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||| |||||  |||||| |||||    
T  43896073 ctagaatgaatccatccacaccatttgaaaatttctctccagaatcttatgagatagaataatcagga 43896140  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 44306520 - 44306594
Alignment:
Q  137 atttctctagaatgaatcaattcacaccatttg-aaaatttctctccacaatcttttgagaccgaataagcagga 210  Q
    ||||| |||||||||||| |||||||||||||| ||||  |||||||| |||||| |||||| ||||||| ||||    
T  44306520 atttccctagaatgaatccattcacaccatttgaaaaaactctctccagaatcttatgagacagaataagtagga 44306594  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 44312137 - 44312172
Alignment:
Q  13 agcagagataggatcaagtgttaaatgcagaacaca 48  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44312137 agcagagataggatcaactgttaaatgcagaacaca 44312172  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 43895856 - 43895890
Alignment:
Q  14 gcagagataggatcaagtgttaaatgcagaacaca 48  Q
    ||||||||||||||| |||||||||||||||||||    
T  43895856 gcagagataggatcaggtgttaaatgcagaacaca 43895890  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 44306284 - 44306313
Alignment:
Q  16 agagataggatcaagtgttaaatgcagaac 45  Q
    ||||||||||||||||||||||||||||||    
T  44306284 agagataggatcaagtgttaaatgcagaac 44306313  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 18701668 - 18701744
Alignment:
Q  134 attatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcagga 210  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  ||||||||||||||||||||||||||    
T  18701668 attatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccggaatcttttgagaccgaataagcagga 18701744  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 18701618 - 18701651
Alignment:
Q  101 aacaaaccattgcaaagctaataaaccaaaccaa 134  Q
    ||||||||||||||||||||||||||||||||||    
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaa 18701651  T

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