View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_low_4 (Length: 394)
Name: NF18758_low_4
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 39882942 - 39883307
Alignment:
| Q |
19 |
ctcagacccattgctttatgtaacgcgagctataaaataatttgaaaaatcttggcttatagaataaggaatatcatgccttatgtggtctcacaacatg |
118 |
Q |
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| T |
39882942 |
ctcagacccattgctttatgtaacgtgagctataaaataatttaaaaaatcttggcttatagaataaggaatatcatgccttatgtggtctcacaacatg |
39883041 |
T |
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| Q |
119 |
aaggtagttttataccaggacgttcttcaacttcaaagtagtttgaagctgctacaagctttatgttaatatatcgtgattggtctatatcaatgaaaca |
218 |
Q |
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| T |
39883042 |
caagtagttttataccaggacgttcttcaacttcaaagtagtttgaagctgctacaagctttatgttaatatatcgtgattggtctatatcaatgaaaca |
39883141 |
T |
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| Q |
219 |
taaagcttgtgatgcatgagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttt |
318 |
Q |
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| T |
39883142 |
taaagcttgtgatgtatgagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttt |
39883241 |
T |
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| Q |
319 |
tgtttggattaaatggaacttgaagtgcatggaaattgttaatataccttgagattggtctatatt |
384 |
Q |
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| T |
39883242 |
tgtttggattaaatggaacttgacgtgcaaggaaattgttaatataccttgagattggtctatatt |
39883307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 40645543 - 40645441
Alignment:
| Q |
236 |
gagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatgga |
335 |
Q |
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| T |
40645543 |
gagattgtgaggacactaaggagctttggtca-agggtcataaaagaagaatattggagttagttctccaggctcgatctttttgtttggattgaatgga |
40645445 |
T |
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| Q |
336 |
actt |
339 |
Q |
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|||| |
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| T |
40645444 |
actt |
40645441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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