View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18758_low_7 (Length: 316)
Name: NF18758_low_7
Description: NF18758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18758_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 46643190 - 46642893
Alignment:
| Q |
1 |
ctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643190 |
ctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtct |
46643091 |
T |
|
| Q |
101 |
ttcttattcctggtgttgagaagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggcagctga |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46643090 |
ttcttattcctggtgttgataagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggtagctga |
46642991 |
T |
|
| Q |
201 |
accgaatattcttgagcttgaagaggaagaatctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatcggatg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642990 |
accgaatattcttgagcttgaagaggaagaatctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatcggatg |
46642893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 46176561 - 46176277
Alignment:
| Q |
6 |
ctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtctttctt |
105 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| |||| ||||| |
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| T |
46176561 |
ctgggaagctgtttggccccgcttgttggcaagaggttggcactctgagcaaccaaagtatcgaggctatcttacctcccaagattatttggtttttctc |
46176462 |
T |
|
| Q |
106 |
attcctggtgttgagaagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggcagctgaaccga |
205 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| | ||||||||| | |
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| T |
46176461 |
attcctggtgttgagaagttttcaaggagaaaacttgtgaaaggtgatcattactttgattatgttagtgatgtcttgagcaaagtagtagctgaaccta |
46176362 |
T |
|
| Q |
206 |
atattcttgagcttgaagaggaagaatctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatc |
293 |
Q |
| |
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||||||| | ||| ||| |||||| |||||||| |||| |||||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
46176361 |
atattctcgtgctcgaa---gaagaagctaaagttggtagctacaatgaggaagaaccagaaaagggatcaaatgaagatgatttatc |
46176277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 46637613 - 46637908
Alignment:
| Q |
1 |
ctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtct |
100 |
Q |
| |
|
||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||| | |
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| T |
46637613 |
ctcttctgggaagctgtttggccccgcttgctgggaagaggttggcactctgagcaaccaaagtatcgaggctatgttacctccaatgataatctggttt |
46637712 |
T |
|
| Q |
101 |
ttcttattcctggtgttgagaagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggcagctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| | ||||| |
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| T |
46637713 |
ttcttattcctggtgttgagaagttttcaaggagaaaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttgctga |
46637812 |
T |
|
| Q |
201 |
accgaatattcttgagct------tgaagaggaagaatctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgattt |
290 |
Q |
| |
|
|||||||||||| ||| ||||| |||||| | |||||| ||||||||||||||| |||||||||| ||| |||||||||||||||| |
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| T |
46637813 |
accgaatattctcctgctcaaagaagaagaagaagaagccaaagttggtagctgcaatgaggaagagccagaaaatggatcaaatgaagatgattt |
46637908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 46618907 - 46619118
Alignment:
| Q |
1 |
ctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtct |
100 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||| ||||||||||| | |
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| T |
46618907 |
ctcttctgggaggctgtttggccccgcttactggcaagaggttggcactctgagcaaccaaagtatcgatgctatgttacttccaatgattatctggttt |
46619006 |
T |
|
| Q |
101 |
ttcttattcctggtgttgagaagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggcagctga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| | ||||| |
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| T |
46619007 |
ttcttattcccggtgttgagaagttttcgaggagaaaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttgctga |
46619106 |
T |
|
| Q |
201 |
accgaatattct |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
46619107 |
accgaatattct |
46619118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 46629794 - 46630089
Alignment:
| Q |
1 |
ctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtct |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||| ||| ||||| ||| | |||||||||| | ||||||||||| | |
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|
| T |
46629794 |
ctcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggttt |
46629893 |
T |
|
| Q |
101 |
ttcttattcctggtgttgagaagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggcagctga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||| ||||| | |||||| |
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|
| T |
46629894 |
ttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctga |
46629993 |
T |
|
| Q |
201 |
accgaatattcttgagcttgaagaggaagaa---tctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatc |
293 |
Q |
| |
|
|||||||||||| | ||| |||| |||||| ||||||| ||||||||||||||| ||| ||||||| || |||||| | |||||||||| |
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|
| T |
46629994 |
accgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatc |
46630089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 15769605 - 15769311
Alignment:
| Q |
1 |
ctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||| |||| | |
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| T |
15769605 |
ctcttctgggaagctgtttggcctcgcttactggcaagaggttggcactctgagcaaccaaagaatcgaggctatattacctccaaagattatttggttt |
15769506 |
T |
|
| Q |
101 |
ttcttattcctggtgttgagaagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggcagctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||| |||||| |||||||| |
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|
| T |
15769505 |
ttcttattcctggtgttgagaagttttcgaggaggaaacttgtaaaaggtcatcattactttgattctgttagtgatgtcttgagcaaagtagcagctga |
15769406 |
T |
|
| Q |
201 |
accgaatattcttgagcttgaagaggaagaatctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatcggatg |
298 |
Q |
| |
|
|||||||||||| | ||| ||||||||| || ||||| ||||| ||||||||| ||||||||||||| |||||||||||||| |||| |||| |
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|
| T |
15769405 |
accgaatattctcgtgct---cgaggaagaagctgaagttggtagctgtaatgaggaagggccagaaaagggatcaaatgaagatgatgtatctgatg |
15769311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 88 - 293
Target Start/End: Complemental strand, 18376203 - 18375995
Alignment:
| Q |
88 |
gattatctggtctttcttattcctggtgttgagaagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaaca |
187 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| | |
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|
| T |
18376203 |
gattatctggtttttcttattcccggggttgagaagttttcaagaagaaaactagtgaaaggtgaccattactttgattcagttagcgatgttttgaaaa |
18376104 |
T |
|
| Q |
188 |
aagtggcagctgaaccgaatattcttgagct---tgaagaggaagaatctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaaga |
284 |
Q |
| |
|
|||| | |||||||||||||||||| | || ||||| |||| | ||||||| ||||||||||||||| ||| |||||| ||| |||||| | | |
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|
| T |
18376103 |
aagtagtagctgaaccgaatattctcgtcctcaaagaagaagaagcagctaaagtcggtagctgcaatgaggaagagctagaaaaaggatcaaatggaca |
18376004 |
T |
|
| Q |
285 |
tgatttatc |
293 |
Q |
| |
|
||||||||| |
|
|
| T |
18376003 |
tgatttatc |
18375995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 14467353 - 14467298
Alignment:
| Q |
4 |
ttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaacc |
59 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | ||||||||| || |||||||| |
|
|
| T |
14467353 |
ttctgggaggctgtttggcctcgattacttgcgaaaggttggcattcagagcaacc |
14467298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49584430 - 49584488
Alignment:
| Q |
1 |
ctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaacc |
59 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| ||||||||||||||||| ||| |||| |
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|
| T |
49584430 |
ctcttttgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
49584488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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