View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18759_high_15 (Length: 238)

Name: NF18759_high_15
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18759_high_15
NF18759_high_15
[»] chr2 (15 HSPs)
chr2 (18-137)||(14481810-14481924)
chr2 (138-238)||(1695981-1696081)
chr2 (138-238)||(13995914-13996014)
chr2 (138-238)||(41248800-41248900)
chr2 (138-238)||(33739759-33739859)
chr2 (138-238)||(33062291-33062391)
chr2 (172-238)||(14900724-14900791)
chr2 (181-235)||(6657976-6658031)
chr2 (181-235)||(16099153-16099208)
chr2 (138-190)||(13995729-13995780)
chr2 (138-190)||(33062106-33062157)
chr2 (138-190)||(33739993-33740044)
chr2 (138-190)||(41248615-41248666)
chr2 (181-235)||(39498408-39498463)
chr2 (138-190)||(1695796-1695847)
[»] chr8 (17 HSPs)
chr8 (138-238)||(2266548-2266648)
chr8 (138-238)||(3041697-3041797)
chr8 (138-238)||(38845540-38845640)
chr8 (138-238)||(40775891-40775991)
chr8 (138-238)||(44407098-44407198)
chr8 (138-238)||(36325290-36325390)
chr8 (138-213)||(35449876-35449950)
chr8 (138-238)||(11674751-11674850)
chr8 (181-235)||(1425297-1425352)
chr8 (181-235)||(23698519-23698574)
chr8 (138-190)||(2266782-2266833)
chr8 (138-190)||(3041512-3041563)
chr8 (138-190)||(38845355-38845406)
chr8 (138-190)||(44406913-44406964)
chr8 (181-235)||(23663789-23663844)
chr8 (181-235)||(38955801-38955856)
chr8 (138-190)||(40775706-40775757)
[»] chr7 (11 HSPs)
chr7 (138-238)||(34928891-34928991)
chr7 (138-238)||(39686775-39686875)
chr7 (138-238)||(30948401-30948501)
chr7 (138-238)||(32680836-32680936)
chr7 (181-235)||(17102118-17102173)
chr7 (181-235)||(27991837-27991892)
chr7 (138-190)||(30948216-30948267)
chr7 (184-235)||(32298980-32299032)
chr7 (138-190)||(34928706-34928757)
chr7 (138-190)||(39686590-39686641)
chr7 (181-235)||(6571111-6571166)
[»] chr6 (10 HSPs)
chr6 (138-238)||(363071-363171)
chr6 (138-238)||(28000626-28000726)
chr6 (138-238)||(14196856-14196956)
chr6 (181-235)||(30337547-30337602)
chr6 (181-235)||(17734438-17734493)
chr6 (138-238)||(25486169-25486267)
chr6 (137-190)||(28000440-28000492)
chr6 (138-190)||(362926-362977)
chr6 (181-213)||(3059355-3059387)
chr6 (138-190)||(22367481-22367532)
[»] chr5 (12 HSPs)
chr5 (138-238)||(1506023-1506123)
chr5 (138-238)||(297255-297355)
chr5 (138-238)||(31482643-31482743)
chr5 (138-238)||(6758106-6758206)
chr5 (138-238)||(41930572-41930672)
chr5 (138-190)||(1506257-1506308)
chr5 (138-190)||(31482458-31482509)
chr5 (181-235)||(3529117-3529172)
chr5 (181-235)||(28771113-28771168)
chr5 (138-190)||(297070-297121)
chr5 (181-213)||(5024316-5024348)
chr5 (181-213)||(13962962-13962994)
[»] chr4 (25 HSPs)
chr4 (138-238)||(34837315-34837415)
chr4 (138-238)||(9145007-9145107)
chr4 (138-238)||(38012226-38012326)
chr4 (138-238)||(42738272-42738372)
chr4 (138-238)||(32950198-32950298)
chr4 (138-235)||(27934588-27934685)
chr4 (138-238)||(22566855-22566955)
chr4 (138-238)||(23613365-23613465)
chr4 (181-238)||(4982967-4983025)
chr4 (138-238)||(9400760-9400860)
chr4 (138-238)||(33247514-33247614)
chr4 (181-235)||(36009088-36009143)
chr4 (181-235)||(49879451-49879506)
chr4 (181-235)||(50418912-50418967)
chr4 (138-190)||(32950432-32950483)
chr4 (138-190)||(34837130-34837181)
chr4 (138-190)||(38012460-38012511)
chr4 (138-190)||(51203665-51203716)
chr4 (181-235)||(5369045-5369100)
chr4 (181-231)||(13058135-13058186)
chr4 (181-235)||(24711209-24711264)
chr4 (181-235)||(43155771-43155826)
chr4 (181-235)||(44967313-44967368)
chr4 (138-190)||(9144822-9144873)
chr4 (181-213)||(40387565-40387597)
[»] scaffold0024 (2 HSPs)
scaffold0024 (138-238)||(141835-141935)
scaffold0024 (138-190)||(141650-141701)
[»] chr3 (10 HSPs)
chr3 (138-238)||(8041672-8041772)
chr3 (138-238)||(54466479-54466579)
chr3 (138-238)||(10770732-10770832)
chr3 (138-238)||(36314539-36314639)
chr3 (138-238)||(48322618-48322718)
chr3 (181-235)||(2796277-2796332)
chr3 (138-235)||(51994161-51994258)
chr3 (138-190)||(8041906-8041957)
chr3 (138-190)||(47921522-47921573)
chr3 (138-190)||(54466713-54466764)
[»] chr1 (12 HSPs)
chr1 (138-238)||(33442835-33442935)
chr1 (138-238)||(52134124-52134224)
chr1 (139-238)||(4716709-4716808)
chr1 (138-238)||(24905408-24905508)
chr1 (138-238)||(31514559-31514658)
chr1 (138-238)||(28011419-28011519)
chr1 (181-235)||(183466-183521)
chr1 (181-235)||(25647982-25648037)
chr1 (138-235)||(47999367-47999464)
chr1 (138-190)||(31514374-31514425)
chr1 (138-190)||(33442650-33442701)
chr1 (138-190)||(52134358-52134409)
[»] scaffold0559 (1 HSPs)
scaffold0559 (138-238)||(1289-1389)
[»] scaffold0020 (1 HSPs)
scaffold0020 (181-235)||(139770-139825)
[»] scaffold0007 (1 HSPs)
scaffold0007 (181-235)||(1867-1922)
[»] scaffold0205 (1 HSPs)
scaffold0205 (138-231)||(21217-21310)


Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 14481810 - 14481924
Alignment:
Q  18 gcttggagtcaaaaccttctctgtctatatgctttgctttgagtgggtggtgactgatgatgaatctccgtctcggaagagtttctccggtaacaatgaa 117  Q
    ||||||| | ||||||||||||||| |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14481810 gcttggaatgaaaaccttctctgtcgatatgct-----ttgagtgggtggtgactgatgatgaatctccgtctcggaagagtttctccggtaacaatgaa 14481904  T
Q  118 ttttggttccataaatatat 137  Q
    ||||||||||||||||||||    
T  14481905 ttttggttccataaatatat 14481924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 1696081 - 1695981
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  1696081 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgtcacgccacatgaaattccaaa 1695983  T
Q  237 tt 238  Q
    ||    
T  1695982 tt 1695981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 13996014 - 13995914
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  13996014 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 13995916  T
Q  237 tt 238  Q
    ||    
T  13995915 tt 13995914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 41248900 - 41248800
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  41248900 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 41248802  T
Q  237 tt 238  Q
    ||    
T  41248801 tt 41248800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 33739759 - 33739859
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  33739759 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 33739857  T
Q  237 tt 238  Q
    ||    
T  33739858 tt 33739859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 33062391 - 33062291
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||| ||||||||  |||| |||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  33062391 taattgctaatcctggcattttaaccctgcaa-ttgttaatcatttataatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 33062293  T
Q  237 tt 238  Q
    ||    
T  33062292 tt 33062291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 14900791 - 14900724
Alignment:
Q  172 tgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaatt 238  Q
    |||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  14900791 tgttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaatt 14900724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 6657976 - 6658031
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  6657976 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 6658031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 16099153 - 16099208
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  16099153 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 16099208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 13995729 - 13995780
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  13995729 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 13995780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 33062106 - 33062157
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  33062106 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 33062157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 33740044 - 33739993
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  33740044 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 33739993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 41248615 - 41248666
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  41248615 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 41248666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 39498408 - 39498463
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | |||||||||| |||||||||    
T  39498408 tttaaaatttcgtccctctccccacttaatcactgccacgccacataaaattccaa 39498463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 1695796 - 1695847
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| ||||||||  ||||||||||    
T  1695796 taattgctaatcctggcattttaaccctgcaa-ttgttaatcatttaaaattt 1695847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 2266548 - 2266648
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  2266548 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 2266646  T
Q  237 tt 238  Q
    ||    
T  2266647 tt 2266648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 3041797 - 3041697
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  3041797 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 3041699  T
Q  237 tt 238  Q
    ||    
T  3041698 tt 3041697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 38845640 - 38845540
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  38845640 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 38845542  T
Q  237 tt 238  Q
    ||    
T  38845541 tt 38845540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 40775991 - 40775891
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  || |||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  40775991 taattgctaatcctgacattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 40775893  T
Q  237 tt 238  Q
    ||    
T  40775892 tt 40775891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 44407198 - 44407098
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  | ||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  44407198 taattgctaatcctagcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 44407100  T
Q  237 tt 238  Q
    ||    
T  44407099 tt 44407098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 36325290 - 36325390
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||| ||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  36325290 taattgttaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 36325388  T
Q  237 tt 238  Q
    ||    
T  36325389 tt 36325390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 35449950 - 35449876
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcac 213  Q
    |||||||||||  ||||||||||||||||||| ||||||||  ||||||||||||| ||||||| || ||||||||    
T  35449950 taattgctaatcctggcattttaaccctgcaa-ttgttaatcatttaaaatttcgtccctctccccatttaatcac 35449876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 11674751 - 11674850
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccgc-acgccacatgaaattccaaa 236  Q
    |||||| ||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||    
T  11674751 taattgttaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctcc-cacttaatcactgccacgccacatgaaattccaaa 11674848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 1425352 - 1425297
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  1425352 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 1425297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 23698574 - 23698519
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  23698574 tttaaaatttcgtccctctccccacttaatcactgtcacgccacatgaaattccaa 23698519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 2266833 - 2266782
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  2266833 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 2266782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 3041512 - 3041563
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  3041512 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 3041563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 38845355 - 38845406
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  38845355 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 38845406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 44406913 - 44406964
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  44406913 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 44406964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 23663844 - 23663789
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||| ||||||||||||    
T  23663844 tttaaaatttcgtccctctccccacttaatcactgccacgccatatgaaattccaa 23663789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 38955801 - 38955856
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||| | ||||||||||||||||||| | ||| ||||||||||||||||    
T  38955801 tttaaaatttcatccctctcctcacttaatcactgccacaccacatgaaattccaa 38955856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 40775706 - 40775757
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||| ||||  ||||||||||||||||||| |||||||| |||||||||||    
T  40775706 taattgttaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 40775757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 34928991 - 34928891
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  34928991 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 34928893  T
Q  237 tt 238  Q
    ||    
T  34928892 tt 34928891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 39686875 - 39686775
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  39686875 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 39686777  T
Q  237 tt 238  Q
    ||    
T  39686776 tt 39686775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 30948501 - 30948401
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  30948501 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 30948403  T
Q  237 tt 238  Q
    ||    
T  30948402 tt 30948401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 32680936 - 32680836
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  32680936 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 32680838  T
Q  237 tt 238  Q
    ||    
T  32680837 tt 32680836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 17102118 - 17102173
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  17102118 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 17102173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 27991837 - 27991892
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  27991837 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 27991892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 30948216 - 30948267
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  30948216 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 30948267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 32299032 - 32298980
Alignment:
Q  184 aaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    |||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  32299032 aaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 32298980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 34928706 - 34928757
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  34928706 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 34928757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 39686590 - 39686641
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  39686590 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 39686641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 6571111 - 6571166
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    |||||||||| || ||||||| ||||||||||| | ||||||||||||||||||||    
T  6571111 tttaaaattttgtccctctccccacttaatcactgtcacgccacatgaaattccaa 6571166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 363171 - 363071
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  363171 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 363073  T
Q  237 tt 238  Q
    ||    
T  363072 tt 363071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 28000726 - 28000626
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||| ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  28000726 taattgctaattctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 28000628  T
Q  237 tt 238  Q
    ||    
T  28000627 tt 28000626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 14196956 - 14196856
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccgc-acgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||||  ||||||| ||||||||||| || ||||||||||||||||||||    
T  14196956 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgcccctctccccacttaatcactgccacgccacatgaaattccaaa 14196858  T
Q  237 tt 238  Q
    ||    
T  14196857 tt 14196856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 30337547 - 30337602
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  30337547 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 30337602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 17734493 - 17734438
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    |||||||||| || ||||||| ||||||||||| | ||||||||||||||||||||    
T  17734493 tttaaaattttgtccctctccccacttaatcactgccacgccacatgaaattccaa 17734438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 25486267 - 25486169
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccgc-acgccacatgaaattccaaa 236  Q
    |||||||||||   |||| |||| || ||||||| ||||||  ||||||||||||| |||| ||  |||||||||| || ||||||||||||||||||||    
T  25486267 taattgctaatcccggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctcccc--acttaatcactgccacgccacatgaaattccaaa 25486171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 28000440 - 28000492
Alignment:
Q  137 ttaattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    ||||||||||||  || |||||||||||||||| |||||||| |||||||||||    
T  28000440 ttaattgctaatcctgtcattttaaccctgcaa-ttgttaatcgtttaaaattt 28000492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 362926 - 362977
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||| ||||  ||||||||||||||||||| |||||||| |||||||||||    
T  362926 taattgttaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 362977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 3059355 - 3059387
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcac 213  Q
    ||||||||||||| |||||||||||||||||||    
T  3059355 tttaaaatttcgtccctctcctcacttaatcac 3059387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 22367481 - 22367532
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| ||||||||  ||||||||||    
T  22367481 taattgctaatcctggcattttaaccctgcaa-ttgttaatcatttaaaattt 22367532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 1506023 - 1506123
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  1506023 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 1506121  T
Q  237 tt 238  Q
    ||    
T  1506122 tt 1506123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 297355 - 297255
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||    
T  297355 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattcgaaa 297257  T
Q  237 tt 238  Q
    ||    
T  297256 tt 297255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 31482743 - 31482643
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | || ||||||||||||||||||    
T  31482743 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccatgccacatgaaattccaaa 31482645  T
Q  237 tt 238  Q
    ||    
T  31482644 tt 31482643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 6758206 - 6758106
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||| ||||| ||||| ||||||| ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  6758206 taattgttaattctggcaatttaaccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 6758108  T
Q  237 tt 238  Q
    ||    
T  6758107 tt 6758106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 41930572 - 41930672
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  41930572 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 41930670  T
Q  237 tt 238  Q
    ||    
T  41930671 tt 41930672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 1506308 - 1506257
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  1506308 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 1506257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 31482458 - 31482509
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  31482458 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 31482509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 3529172 - 3529117
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | |||||||||| |||||||||    
T  3529172 tttaaaatttcgtccctctccccacttaatcactgccacgccacataaaattccaa 3529117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 28771168 - 28771113
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | || |||||||||||||||||    
T  28771168 tttaaaatttcgtccctctccccacttaatcactgccatgccacatgaaattccaa 28771113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 297070 - 297121
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||| ||||||||||||||| |||||||| |||||||||||    
T  297070 taattgctaatcctggtattttaaccctgcaa-ttgttaatcgtttaaaattt 297121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 5024348 - 5024316
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcac 213  Q
    ||||||||||||||||||||| |||||||||||    
T  5024348 tttaaaatttcgttcctctccccacttaatcac 5024316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 13962962 - 13962994
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcac 213  Q
    ||||||||||||| |||||||||||||||||||    
T  13962962 tttaaaatttcgtccctctcctcacttaatcac 13962994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 34837415 - 34837315
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  34837415 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 34837317  T
Q  237 tt 238  Q
    ||    
T  34837316 tt 34837315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 9145107 - 9145007
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  9145107 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 9145009  T
Q  237 tt 238  Q
    ||    
T  9145008 tt 9145007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 38012226 - 38012326
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| |||||| ||||||||||||||  |||||| ||||||||||| | |||||||||||||||||||||    
T  38012226 taattgctaatcctggcattttaaccctgcaatt-gttaatcgtttaaaatttcgtctctctccccacttaatcactgccacgccacatgaaattccaaa 38012324  T
Q  237 tt 238  Q
    ||    
T  38012325 tt 38012326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 42738372 - 42738272
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  42738372 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 42738274  T
Q  237 tt 238  Q
    ||    
T  42738273 tt 42738272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 32950198 - 32950298
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||| ||||||||  |||||||||||||  |||||| ||||||||||| | |||||||||||||||||||||    
T  32950198 taattgctaatcctggcattttaaccctgcaa-ttgttaatcatttaaaatttcgtctctctccccacttaatcactgccacgccacatgaaattccaaa 32950296  T
Q  237 tt 238  Q
    ||    
T  32950297 tt 32950298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 27934588 - 27934685
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  27934588 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 27934685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 22566855 - 22566955
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||| | ||||||| ||||||||||| | |||||||||||||||||||||    
T  22566855 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcatccctctccccacttaatcactgccacgccacatgaaattccaaa 22566953  T
Q  237 tt 238  Q
    ||    
T  22566954 tt 22566955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 23613365 - 23613465
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||| |||||| |||||| |||| ||||||| | | |||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  23613365 taatcgctaatcttggcaatttacccctgcattgt-ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 23613463  T
Q  237 tt 238  Q
    ||    
T  23613464 tt 23613465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 4983025 - 4982967
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaatt 238  Q
    ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  4983025 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaatt 4982967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 9400860 - 9400760
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||| | ||||||| ||||||||||| | |||||||||||||||| ||||    
T  9400860 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcatccctctccccacttaatcactgccacgccacatgaaattacaaa 9400762  T
Q  237 tt 238  Q
    ||    
T  9400761 tt 9400760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 33247614 - 33247514
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||| | ||||||| ||||||||||| | |||||||||||||||| ||||    
T  33247614 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcatccctctccccacttaatcactgccacgccacatgaaattacaaa 33247516  T
Q  237 tt 238  Q
    ||    
T  33247515 tt 33247514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 36009143 - 36009088
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  36009143 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 36009088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 49879506 - 49879451
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  49879506 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 49879451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 50418967 - 50418912
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  50418967 tttaaaatttcgtccctctccccacttaatcactgtcacgccacatgaaattccaa 50418912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 32950483 - 32950432
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  32950483 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 32950432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 34837130 - 34837181
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  34837130 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 34837181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 38012511 - 38012460
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  38012511 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 38012460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 51203665 - 51203716
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  51203665 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 51203716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 5369045 - 5369100
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    |||||||||| || ||||||| ||||||||||| | ||||||||||||||||||||    
T  5369045 tttaaaattttgtccctctccccacttaatcactgccacgccacatgaaattccaa 5369100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 13058135 - 13058186
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaatt 231  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||    
T  13058135 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaatt 13058186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 24711209 - 24711264
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcac-cgcacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| |||||||||||   ||||||||||||||||||||    
T  24711209 tttaaaatttcgtccctctccccacttaatcactaccacgccacatgaaattccaa 24711264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 43155826 - 43155771
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | |||||||||| |||||||||    
T  43155826 tttaaaatttcgtccctctccccacttaatcactgccacgccacataaaattccaa 43155771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 44967368 - 44967313
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||| ||||||||||||||||    
T  44967368 tttaaaatttcgtccctctccccacttaatcactgccacaccacatgaaattccaa 44967313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 9144822 - 9144873
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| ||||||||  ||||||||||    
T  9144822 taattgctaatcctggcattttaaccctgcaa-ttgttaatcatttaaaattt 9144873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 40387565 - 40387597
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcac 213  Q
    ||||||||||||||||||| |||||||||||||    
T  40387565 tttaaaatttcgttcctcttctcacttaatcac 40387597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 141935 - 141835
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  141935 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 141837  T
Q  237 tt 238  Q
    ||    
T  141836 tt 141835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 141650 - 141701
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  141650 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 141701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 8041672 - 8041772
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  8041672 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 8041770  T
Q  237 tt 238  Q
    ||    
T  8041771 tt 8041772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 54466479 - 54466579
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||| ||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  54466479 taattgttaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 54466577  T
Q  237 tt 238  Q
    ||    
T  54466578 tt 54466579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 10770832 - 10770732
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||| ||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  10770832 taattgttaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 10770734  T
Q  237 tt 238  Q
    ||    
T  10770733 tt 10770732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 36314639 - 36314539
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||| ||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  36314639 taattgttaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 36314541  T
Q  237 tt 238  Q
    ||    
T  36314540 tt 36314539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 48322718 - 48322618
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||| ||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  48322718 taattgttaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 48322620  T
Q  237 tt 238  Q
    ||    
T  48322619 tt 48322618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 2796277 - 2796332
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  2796277 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 2796332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 51994258 - 51994161
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    |||| ||||||| ||||| |||| ||||||| | | |||||  ||||||||||||| ||||||| ||||||||||| | |||| |||||||||||||||    
T  51994258 taatcgctaattctggcaatttacccctgcattgt-ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcacatgaaattccaa 51994161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 8041957 - 8041906
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  8041957 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 8041906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 47921522 - 47921573
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||| |||| |||||||||||||||||||| |||||||| |||||||||||    
T  47921522 taattgttaatcttggcattttaaccctgcaa-ttgttaatcgtttaaaattt 47921573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 54466764 - 54466713
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||| ||||  ||||||||||||||||||| |||||||| |||||||||||    
T  54466764 taattggtaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 54466713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 33442935 - 33442835
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  33442935 taattgctaatcctggcattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 33442837  T
Q  237 tt 238  Q
    ||    
T  33442836 tt 33442835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 52134124 - 52134224
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  |||||||||||||||| |||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  52134124 taattgctaatcctggcattttaaccctgtaatt-gttaatcgtttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 52134222  T
Q  237 tt 238  Q
    ||    
T  52134223 tt 52134224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 4716808 - 4716709
Alignment:
Q  139 aattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaat 237  Q
    ||||||||||  ||||||||||||||||||| ||||||||  |||||||||||||  |||||| ||||||||||| | ||||||||||||||||||||||    
T  4716808 aattgctaatcctggcattttaaccctgcaa-ttgttaatcatttaaaatttcgtctctctccccacttaatcactgccacgccacatgaaattccaaat 4716710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 24905508 - 24905408
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| |||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  24905508 taattgctaatcctggcaatttagccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 24905410  T
Q  237 tt 238  Q
    ||    
T  24905409 tt 24905408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 31514658 - 31514559
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||||||||||||||||| || |||||  ||||||||||||| ||||||| ||||||||||| | |||||| ||||||||||||||    
T  31514658 taattgctaatcctggcattttaaccctgcaa-ttattaatcatttaaaatttcgtccctctccccacttaatcactgccacgcc-catgaaattccaaa 31514561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 28011419 - 28011519
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  ||||| |||| || ||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||| ||||    
T  28011419 taattgctaatcctggcaatttagccttgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaatttcaaa 28011517  T
Q  237 tt 238  Q
    ||    
T  28011518 tt 28011519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 183521 - 183466
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  183521 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 183466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 25647982 - 25648037
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  25647982 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 25648037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 47999464 - 47999367
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    |||| |||||| |||||| |||| ||||||| | | |||||  |||||||| |||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  47999464 taatcgctaatcttggcaatttacccctgcattat-ttaatcatttaaaatatcgtccctctccccacttaatcactgccacgccacatgaaattccaa 47999367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 31514374 - 31514425
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||| ||||| ||||||||||||||||||| |||||||| |||||||||||    
T  31514374 taattgttaattctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 31514425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 33442650 - 33442701
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  33442650 taattgctaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 33442701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 52134409 - 52134358
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaattt 190  Q
    |||||| ||||  ||||||||||||||||||| |||||||| |||||||||||    
T  52134409 taattgttaatcctggcattttaaccctgcaa-ttgttaatcgtttaaaattt 52134358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 1289 - 1389
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaaa 236  Q
    |||||||||||  || |||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  1289 taattgctaatcctgacattttaaccctgcaatt-gttaatcatttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaaa 1387  T
Q  237 tt 238  Q
    ||    
T  1388 tt 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 139770 - 139825
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  139770 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 139825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 1867 - 1922
Alignment:
Q  181 tttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaattccaa 235  Q
    ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  1867 tttaaaatttcgtccctctccccacttaatcactgccacgccacatgaaattccaa 1922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 21310 - 21217
Alignment:
Q  138 taattgctaattttggcattttaaccctgcaatttgttaatagtttaaaatttcgttcctctcctcacttaatcaccg-cacgccacatgaaatt 231  Q
    |||||||||||  ||||| ||||  | ||||||| ||||||  ||||||||| ||| ||||||| ||||||||||| | ||||||||||||||||    
T  21310 taattgctaatcatggcaatttagtcttgcaatt-gttaatcatttaaaattccgtccctctccccacttaatcactgccacgccacatgaaatt 21217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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