View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18759_low_1 (Length: 860)

Name: NF18759_low_1
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18759_low_1
NF18759_low_1
[»] chr1 (33 HSPs)
chr1 (19-860)||(7740480-7741312)
chr1 (600-792)||(15581519-15581704)
chr1 (692-842)||(48046435-48046586)
chr1 (600-804)||(42365839-42366032)
chr1 (627-824)||(41404048-41404238)
chr1 (602-737)||(50678182-50678314)
chr1 (602-818)||(34969739-34969938)
chr1 (665-769)||(16302721-16302826)
chr1 (665-737)||(42934226-42934301)
chr1 (275-436)||(9474815-9474976)
chr1 (275-398)||(50590977-50591100)
chr1 (275-447)||(43132-43304)
chr1 (274-457)||(32813246-32813429)
chr1 (305-439)||(41758835-41758969)
chr1 (316-398)||(44332348-44332430)
chr1 (299-416)||(13414785-13414902)
chr1 (275-436)||(47452259-47452420)
chr1 (600-637)||(48046405-48046442)
chr1 (274-398)||(5958977-5959101)
chr1 (665-737)||(19551225-19551297)
chr1 (275-439)||(27564671-27564835)
chr1 (272-435)||(37926378-37926541)
chr1 (275-398)||(41608470-41608593)
chr1 (316-435)||(45044500-45044619)
chr1 (275-398)||(47748443-47748565)
chr1 (274-439)||(2581914-2582079)
chr1 (273-418)||(51898640-51898785)
chr1 (521-585)||(46205370-46205434)
chr1 (665-737)||(49764907-49764979)
chr1 (665-739)||(23473769-23473843)
chr1 (276-398)||(44453980-44454102)
chr1 (274-452)||(49811450-49811628)
chr1 (274-439)||(38632257-38632422)
[»] chr7 (37 HSPs)
chr7 (600-852)||(36657533-36657779)
chr7 (600-804)||(23417195-23417387)
chr7 (275-398)||(32564403-32564526)
chr7 (268-442)||(18207173-18207346)
chr7 (665-831)||(261701-261867)
chr7 (602-803)||(19625367-19625566)
chr7 (274-439)||(8080319-8080484)
chr7 (304-452)||(16374747-16374895)
chr7 (273-457)||(46033719-46033903)
chr7 (665-748)||(5925167-5925250)
chr7 (271-398)||(22343357-22343484)
chr7 (272-379)||(36361909-36362016)
chr7 (275-398)||(38267040-38267163)
chr7 (271-398)||(41915737-41915864)
chr7 (272-398)||(26296641-26296767)
chr7 (361-439)||(41423768-41423846)
chr7 (665-840)||(12633429-12633613)
chr7 (275-452)||(39255847-39256023)
chr7 (275-435)||(4999454-4999614)
chr7 (274-398)||(36208172-36208296)
chr7 (272-379)||(36362023-36362130)
chr7 (275-457)||(21234401-21234583)
chr7 (280-437)||(3784000-3784157)
chr7 (274-435)||(19436127-19436288)
chr7 (275-439)||(19329842-19330006)
chr7 (280-439)||(32951429-32951588)
chr7 (275-442)||(35137533-35137700)
chr7 (275-398)||(40846090-40846213)
chr7 (271-365)||(42972955-42973048)
chr7 (521-585)||(25029729-25029793)
chr7 (274-398)||(35468832-35468956)
chr7 (274-390)||(38044196-38044312)
chr7 (665-704)||(29428919-29428958)
chr7 (276-379)||(35522877-35522980)
chr7 (274-379)||(7389388-7389493)
chr7 (305-398)||(8238243-8238336)
chr7 (275-364)||(46374813-46374902)
[»] chr5 (30 HSPs)
chr5 (600-842)||(11617182-11617422)
chr5 (600-792)||(4943475-4943665)
chr5 (665-769)||(7505998-7506103)
chr5 (665-821)||(9159446-9159603)
chr5 (274-457)||(31008987-31009170)
chr5 (275-439)||(14831814-14831978)
chr5 (665-803)||(30084910-30085049)
chr5 (275-418)||(35943849-35943992)
chr5 (272-398)||(2252145-2252271)
chr5 (274-439)||(15409546-15409711)
chr5 (296-393)||(16327922-16328019)
chr5 (275-452)||(33825247-33825424)
chr5 (274-398)||(3921242-3921366)
chr5 (275-439)||(33149574-33149738)
chr5 (280-439)||(18520820-18520979)
chr5 (273-398)||(6679696-6679821)
chr5 (275-379)||(28177775-28177879)
chr5 (691-804)||(29293199-29293312)
chr5 (275-435)||(26720516-26720676)
chr5 (275-435)||(26990265-26990425)
chr5 (273-439)||(2740272-2740438)
chr5 (665-809)||(5247867-5248005)
chr5 (324-382)||(25831334-25831392)
chr5 (600-634)||(30084858-30084892)
chr5 (274-392)||(38296202-38296320)
chr5 (282-435)||(13811659-13811812)
chr5 (274-439)||(36732878-36733043)
chr5 (275-418)||(35785199-35785342)
chr5 (274-435)||(9603812-9603973)
chr5 (600-637)||(41483507-41483544)
[»] chr3 (45 HSPs)
chr3 (600-842)||(39439801-39440041)
chr3 (600-804)||(27011134-27011331)
chr3 (273-457)||(35536624-35536808)
chr3 (600-792)||(42029276-42029466)
chr3 (271-398)||(8956758-8956885)
chr3 (275-457)||(14623757-14623939)
chr3 (273-435)||(25395274-25395435)
chr3 (600-803)||(25045315-25045521)
chr3 (296-393)||(13898037-13898134)
chr3 (271-393)||(45320366-45320488)
chr3 (316-425)||(1758407-1758515)
chr3 (280-457)||(30801651-30801828)
chr3 (673-784)||(2230102-2230209)
chr3 (274-418)||(41189721-41189865)
chr3 (275-439)||(53982011-53982175)
chr3 (600-651)||(32278316-32278367)
chr3 (603-700)||(44713184-44713273)
chr3 (275-398)||(45058530-45058652)
chr3 (274-439)||(11347858-11348023)
chr3 (665-792)||(25909352-25909480)
chr3 (275-457)||(8076393-8076575)
chr3 (274-380)||(33118846-33118952)
chr3 (273-398)||(24699931-24700056)
chr3 (275-392)||(26141515-26141632)
chr3 (274-439)||(49607413-49607578)
chr3 (275-439)||(33644200-33644364)
chr3 (665-733)||(40026083-40026151)
chr3 (275-379)||(51419356-51419460)
chr3 (669-826)||(23420240-23420401)
chr3 (274-345)||(35965804-35965875)
chr3 (273-435)||(17470403-17470565)
chr3 (305-439)||(31456719-31456853)
chr3 (316-398)||(36331306-36331388)
chr3 (600-637)||(2230242-2230279)
chr3 (274-379)||(54868891-54868996)
chr3 (665-737)||(29765266-29765337)
chr3 (521-585)||(52286126-52286190)
chr3 (601-640)||(23407925-23407964)
chr3 (274-392)||(11907370-11907488)
chr3 (316-398)||(41080749-41080830)
chr3 (302-447)||(9563026-9563171)
chr3 (274-343)||(11095385-11095454)
chr3 (669-787)||(23466708-23466829)
chr3 (274-435)||(35093584-35093745)
chr3 (297-398)||(42823133-42823234)
[»] chr4 (46 HSPs)
chr4 (603-842)||(35292001-35292233)
chr4 (606-814)||(50859126-50859327)
chr4 (601-754)||(3121182-3121328)
chr4 (665-792)||(22405046-22405174)
chr4 (671-798)||(31227714-31227841)
chr4 (665-815)||(46944056-46944207)
chr4 (600-732)||(41223714-41223838)
chr4 (600-803)||(35033797-35033998)
chr4 (603-771)||(48084633-48084799)
chr4 (474-596)||(18895213-18895337)
chr4 (274-435)||(47104543-47104704)
chr4 (274-439)||(48182985-48183150)
chr4 (275-415)||(8343123-8343263)
chr4 (665-737)||(21263630-21263702)
chr4 (274-457)||(50052346-50052529)
chr4 (305-439)||(24995043-24995177)
chr4 (665-842)||(4292583-4292759)
chr4 (275-384)||(29535377-29535485)
chr4 (274-425)||(480397-480548)
chr4 (275-398)||(11511439-11511562)
chr4 (272-398)||(28480245-28480371)
chr4 (272-398)||(28481120-28481246)
chr4 (272-398)||(28481995-28482121)
chr4 (273-398)||(47986206-47986331)
chr4 (274-398)||(19670693-19670817)
chr4 (274-457)||(29239885-29240068)
chr4 (271-398)||(50813869-50813996)
chr4 (296-398)||(17983720-17983822)
chr4 (305-398)||(29589717-29589810)
chr4 (305-390)||(29977915-29978000)
chr4 (275-435)||(6034044-6034204)
chr4 (274-398)||(29547936-29548060)
chr4 (275-439)||(41236347-41236511)
chr4 (665-824)||(41809851-41810016)
chr4 (275-439)||(54473469-54473633)
chr4 (274-398)||(55475190-55475314)
chr4 (608-651)||(13779289-13779332)
chr4 (274-393)||(32766957-32767076)
chr4 (274-425)||(48647676-48647827)
chr4 (319-384)||(18769153-18769218)
chr4 (275-379)||(31910192-31910296)
chr4 (275-398)||(55079690-55079814)
chr4 (302-437)||(23608262-23608397)
chr4 (665-703)||(4342109-4342147)
chr4 (319-384)||(18769038-18769103)
chr4 (273-398)||(44536723-44536847)
[»] scaffold0022 (2 HSPs)
scaffold0022 (600-826)||(44076-44300)
scaffold0022 (600-826)||(77797-78021)
[»] chr2 (38 HSPs)
chr2 (600-842)||(10354208-10354443)
chr2 (665-792)||(28219028-28219156)
chr2 (275-419)||(17819960-17820104)
chr2 (600-737)||(7444724-7444858)
chr2 (275-439)||(13438343-13438507)
chr2 (275-398)||(38732354-38732477)
chr2 (669-824)||(1499181-1499338)
chr2 (274-441)||(9058479-9058646)
chr2 (273-439)||(36168834-36169000)
chr2 (274-439)||(10249318-10249483)
chr2 (666-798)||(44246347-44246475)
chr2 (271-439)||(28863451-28863619)
chr2 (274-398)||(45097712-45097836)
chr2 (274-457)||(20700814-20700997)
chr2 (273-436)||(32505587-32505750)
chr2 (275-398)||(43490121-43490244)
chr2 (273-439)||(7465671-7465837)
chr2 (275-457)||(40613820-40614002)
chr2 (274-392)||(42257192-42257310)
chr2 (274-390)||(15428725-15428841)
chr2 (601-803)||(28199194-28199393)
chr2 (696-814)||(17999917-18000035)
chr2 (280-435)||(19930760-19930915)
chr2 (296-398)||(2997464-2997566)
chr2 (273-343)||(5574520-5574590)
chr2 (600-637)||(6476769-6476806)
chr2 (274-435)||(33436040-33436201)
chr2 (274-398)||(26891481-26891605)
chr2 (273-439)||(2533122-2533287)
chr2 (274-435)||(38273083-38273243)
chr2 (275-439)||(17473020-17473184)
chr2 (271-355)||(33436207-33436291)
chr2 (275-379)||(40701478-40701582)
chr2 (602-637)||(18000080-18000115)
chr2 (602-637)||(44246301-44246336)
chr2 (318-392)||(3737986-3738060)
chr2 (316-398)||(13365394-13365476)
chr2 (274-343)||(30915462-30915531)
[»] scaffold0127 (1 HSPs)
scaffold0127 (627-824)||(30097-30287)
[»] chr8 (30 HSPs)
chr8 (600-852)||(38679689-38679938)
chr8 (600-737)||(42025397-42025526)
chr8 (274-398)||(16056378-16056502)
chr8 (601-732)||(34924794-34924922)
chr8 (600-737)||(14112385-14112520)
chr8 (273-398)||(17443823-17443948)
chr8 (275-435)||(12831047-12831207)
chr8 (280-439)||(5957835-5957994)
chr8 (274-458)||(10284548-10284732)
chr8 (274-398)||(16383376-16383500)
chr8 (274-398)||(24307770-24307894)
chr8 (275-439)||(34012232-34012396)
chr8 (275-398)||(30479451-30479574)
chr8 (669-743)||(30800196-30800270)
chr8 (282-439)||(14547929-14548086)
chr8 (274-398)||(15258906-15259030)
chr8 (669-737)||(28873761-28873829)
chr8 (275-439)||(504057-504221)
chr8 (275-379)||(15197333-15197437)
chr8 (275-439)||(23122533-23122697)
chr8 (274-398)||(34307215-34307339)
chr8 (271-418)||(37038475-37038622)
chr8 (275-437)||(1179878-1180040)
chr8 (274-356)||(24307628-24307710)
chr8 (327-457)||(42354506-42354636)
chr8 (274-398)||(42221514-42221638)
chr8 (271-398)||(32032721-32032847)
chr8 (275-398)||(40423920-40424043)
chr8 (275-345)||(20074964-20075034)
chr8 (316-457)||(8841350-8841491)
[»] chr6 (17 HSPs)
chr6 (275-457)||(31952948-31953130)
chr6 (279-390)||(9379697-9379808)
chr6 (274-393)||(12732481-12732600)
chr6 (272-439)||(11427613-11427782)
chr6 (282-439)||(32869685-32869842)
chr6 (274-398)||(15990019-15990143)
chr6 (274-398)||(30341337-30341461)
chr6 (275-398)||(15508001-15508124)
chr6 (296-435)||(28536428-28536565)
chr6 (275-418)||(17598554-17598697)
chr6 (271-457)||(31976244-31976430)
chr6 (305-398)||(4231578-4231671)
chr6 (297-379)||(23128123-23128205)
chr6 (518-564)||(33870203-33870249)
chr6 (280-435)||(22880598-22880753)
chr6 (274-447)||(6209394-6209566)
chr6 (274-439)||(15832576-15832741)
[»] scaffold0110 (1 HSPs)
scaffold0110 (600-804)||(38552-38739)
[»] scaffold0039 (2 HSPs)
scaffold0039 (667-737)||(56928-56998)
scaffold0039 (600-637)||(56864-56901)
[»] scaffold0224 (1 HSPs)
scaffold0224 (665-737)||(12470-12545)
[»] scaffold0227 (1 HSPs)
scaffold0227 (665-737)||(238-310)
[»] scaffold0321 (1 HSPs)
scaffold0321 (274-343)||(10141-10210)
[»] scaffold0018 (1 HSPs)
scaffold0018 (305-393)||(152528-152616)


Alignment Details
Target: chr1 (Bit Score: 681; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 19 - 860
Target Start/End: Original strand, 7740480 - 7741312
Alignment:
Q  19 gtgggataaaacttagttattgttgttgtattaaaaatattatatatgattttgtacatgttttttggccttaattttatctttttagatgatggttgag 118  Q
    ||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7740480 gtgggataaaatttagttattgt---tgtattaaaaatattatatatgattttgtacatgttttttggccttaattttatcattttagatgatggttgag 7740576  T
Q  119 atcatttcattacatataaccaactgcgtaattgacgttgctaaacagtacactttgaagtttgaaacaattggtcacgaaccaaaatgcaaaataggga 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7740577 atcatttcattacaaataaccaactgcgtaattgacgttgctaaacagcacactttgaagtttgaaacaattggtcacgaaccaaaatgcaaaataggga 7740676  T
Q  219 tcttgctgccaattgtacctatactaaatacttatttttggacgttgctaccaatagagttatgatacattgacaatcttatgtgacaatacatccattg 318  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  7740677 tcttgctgccaattgtacctatactaaatacttatatttgaacgttgctactaatagagttatgatacattgacaaccttatgtgacaatacatccattg 7740776  T
Q  319 acacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaa 418  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||| ||||||||||  |||||||    
T  7740777 acacctacataaaaatatgacacgtggctatgtggaccccacacaaatatattttctttttcatctcctcttctctcttcctgttgcatgggatgtacaa 7740876  T
Q  419 agatgtacgagaataaagggtatccatgtgacatcttccctaccaatattggtgttttgggagagattgcagaaaatacaacatgcctcacacaattttg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7740877 agatgtacgagaataaagggtatccatgtgacatcttccctactaatattggtgttttgggagagattgcacaaaatacaacatgcctcacacaattttg 7740976  T
Q  519 tggcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagccagagtgcacctcttcggctatgtttggattgatg 618  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7740977 tggcatttgagaatatggtgaaaaagtggcgacaattagaaattgaaaaggaattaaaaaatagctagagtgcacctcttcggctatgtttggattgatg 7741076  T
Q  619 gagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaa 718  Q
    |||||||||||||||||||||||||||||| |||||||        ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7741077 gagagtggtggaatggaatagagtgggatgtaaccatg--------ttccattgtttagttttgtaaaaaataaatggaatggaatagagtgtgatggaa 7741168  T
Q  719 cccattccttccaata-ccatcca-ttaaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaact 816  Q
    |||||||||||||||| ||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7741169 cccattccttccaatacccatccatttaaccaaattttcatttcatccaatttgaagtgaatccaatgaaatggaaaacattgataatacaatcacaact 7741268  T
Q  817 ttgcccctaccttttatatttcatcatctgctcctcattctctc 860  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  7741269 ttgcccctaccttttatatttcatcatctgcttctcattctctc 7741312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 600 - 792
Target Start/End: Original strand, 15581519 - 15581704
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||  | |||     |||   |||||||||||||||||||||||| |||||||||    
T  15581519 ggctatgtttggattgatggagagtgatggaatggaatggagtgggatatatcca-----cat---tccattgtttggttttgtaaaaaagaaatggaat 15581610  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccattaaccaaatttt-cattccacccaatttggagtgaatccaatgaaatggaa 792  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||  || |||||| |||||| |||||||||| ||| |||||||| |||||||    
T  15581611 ggaatggagtgtgatggaacccattccatccaataccatccattctcccaattttccattccccccaatttggggtgtatccaatggaatggaa 15581704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 692 - 842
Target Start/End: Original strand, 48046435 - 48046586
Alignment:
Q  692 aatggaatggaatagagtgtgatggaacccattccttccaataccatccattaa-ccaaattttcattccacccaatttggagtgaatccaatgaaatgg 790  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||| || ||||||| ||| |||||||| |||||    
T  48046435 aatggaatggaatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattccccctaatttggggtgtatccaatggaatgg 48046534  T
Q  791 aaaacattgataatacaatcacaactttgcccctaccttttatatttcatca 842  Q
    || ||||  |||||||||| |||||| ||||||| |||||| ||||||||||    
T  48046535 aatacataaataatacaatgacaactatgcccctgccttttttatttcatca 48046586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 600 - 804
Target Start/End: Original strand, 42365839 - 42366032
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||| ||||||||||| ||     |||||||||||||||||  ||       |||||||| |||||||| ||||||||    
T  42365839 ggctatgtttggattgatggagagtgatggaatggaatgga-----atggaaccatgttccattgtt-------ttggttttataaaaaatgaatggaat 42365926  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||   |||| ||||||||||| | ||||||| ||| |||||||| ||||||| |||||    
T  42365927 ggaatggagtgtgatggaacccattccatccaataccattcattcttccaatttttcattccatctaatttggggtgtatccaatggaatggaacacatt 42366026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 627 - 824
Target Start/End: Original strand, 41404048 - 41404238
Alignment:
Q  627 tggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattcc 726  Q
    ||||||||||| |||||||||||| |||||||||        |||||||||||||||||||||  ||||||||||||| || ||||||||||||||||||    
T  41404048 tggaatggaatggagtgggatggagccatgttcc--------attgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattcc 41404139  T
Q  727 ttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccct 824  Q
     ||  ||||||  |||| | |||| ||| |||||| |||||||||| ||| |||||||||||||||| ||||| |||| ||||| |||| |||||||||    
T  41404140 atcatataccactcattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaacacattaataagacaattacaattttgcccct 41404238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 602 - 737
Target Start/End: Complemental strand, 50678314 - 50678182
Alignment:
Q  602 ctatgtttggattgatggagagtggtggaatggaata-----gagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatgg 696  Q
    |||||||||||||||||||||||| |||||||||||      ||||||||||||||||||||||||        |||||||||||||||||||  |||||    
T  50678314 ctatgtttggattgatggagagtgatggaatggaatgaaattgagtgggatggaaccatgttccat--------tgtttggttttgtaaaaaaggaatgg 50678223  T
Q  697 aatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    |||||||| ||||||||||||||||||||  ||||||||||    
T  50678222 aatggaatggagtgtgatggaacccattctatccaatacca 50678182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 602 - 818
Target Start/End: Original strand, 34969739 - 34969938
Alignment:
Q  602 ctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatgg 701  Q
    |||||||||||||||||||||||| |||||||||     |||||||| |||||||||       ||||||||||| ||||||||||||| |||||||||     
T  34969739 ctatgtttggattgatggagagtgatggaatgga-----gtgggatgaaaccatgtt-------tccattgtttgattttgtaaaaaatgaatggaatga 34969826  T
Q  702 aatagagtgtgatggaacccattccttccaataccatccattaa-ccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattga 800  Q
    |     ||||||||||||||||||| ||||||||||  ||||||  ||||||||||||||  ||||||||| ||| ||| |||| ||| ||| ||||| |    
T  34969827 a-----gtgtgatggaacccattccatccaataccactcattaagtcaaattttcattcc-tccaatttggggtgtatcaaatggaatagaatacattaa 34969920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 665 - 769
Target Start/End: Complemental strand, 16302826 - 16302721
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccattaaccaa-attttcattccacc 763  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| |||||| ||||||  |||||||| | |||  |||||||||| ||    
T  16302826 ttccattgtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaactcattccatccaatgtcatccatttatcaattttttcattccccc 16302727  T
Q  764 caattt 769  Q
    ||||||    
T  16302726 caattt 16302721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 665 - 737
Target Start/End: Original strand, 42934226 - 42934301
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaat---ggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    ||||||||||||||||||||||||| ||||   |||||||||| ||||||||||||||||||||| ||||||||||    
T  42934226 ttccattgtttggttttgtaaaaaaaaaataatggaatggaatggagtgtgatggaacccattccatccaatacca 42934301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 275 - 436
Target Start/End: Complemental strand, 9474976 - 9474815
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| |||||||| | ||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacactttc 9474877  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaag 436  Q
    |||||  ||| |||||||| |||| |  |||||||  ||||||| | |||| ||||||||||    
T  9474876 tcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaataaag 9474815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 50591100 - 50590977
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | ||||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 50591001  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  50591000 tctttcttcttctcttctctcttc 50590977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 275 - 447
Target Start/End: Original strand, 43132 - 43304
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| |||| ||||| | |||||||||||| |||||||||||| |||||| |||||||| |  | |||||| || ||||| || | ||||    
T  43132 gagtaatgatacatagacagtcttaggagacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagcacactttc 43231  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgt 447  Q
    |||||  ||| ||| |||| |||  |  ||||||| ||||||||   ||||  ||||||||||||||| ||||    
T  43232 tcttttctctcctcctctctctttctaatgcatggggtgtacaagagtgtataagaataaagggtatctatgt 43304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 32813246 - 32813429
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||  |||| ||| ||||||| || || ||||||||| |||||| ||||||||||  |  |||||||| ||||| || | |||    
T  32813246 agagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacacttt 32813345  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    ||||||  ||| |||||||| |||| |  || |||| |||||||| | |||| | ||||||| ||| || |||| |||| ||||    
T  32813346 ctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttcc 32813429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 41758835 - 41758969
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttg 404  Q
    ||||||| || |||||| ||||| |||||| |||||||| |  |  |||||||| |||||||| | |||||||||  ||| |||||||| |||| |  ||    
T  41758835 caatacaccctttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacactttctcttttctctcctcttctctcttcctaatg 41758934  T
Q  405 catggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||| |||||||| | |||| |||||||||||||    
T  41758935 catggggtgtacaagggtgtatgagaataaagggt 41758969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 44332430 - 44332348
Alignment:
Q  316 ttgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    ||||||||||||||||||| ||||| |||||  | |||||||| |||||  ||| |||||||||| |||||||||||| ||||    
T  44332430 ttgacacccacataaaaatctgacatgtggccctatggaccccgcacaagtatactttctctttcttcttctcttctctcttc 44332348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 13414785 - 13414902
Alignment:
Q  299 atgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    ||||||||||||| || |||||||||||| |||||| | |||||| |  | ||||||||||||||| || |||||||||||  | |  ||||||| ||||    
T  13414785 atgtgacaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacattttctcttttctatcatcttctctcttc 13414884  T
Q  399 gtgttgcatggagtgtac 416  Q
     |  ||||||||||||||    
T  13414885 ctaatgcatggagtgtac 13414902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 275 - 436
Target Start/End: Complemental strand, 47452420 - 47452259
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| |||  |||||| || |||||||||||| |||||| | |||||| |  | ||||| ||| ||||| || | ||||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacactttc 47452321  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaag 436  Q
    |||||  ||| |||||||| |||| | |||||||| |||||||| |||||| | ||||||||    
T  47452320 tcttttctctcctcttctctcttcctattgcatggggtgtacaaggatgtatgggaataaag 47452259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 600 - 637
Target Start/End: Original strand, 48046405 - 48046442
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaat 637  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48046405 ggctatgtttggattgatggagagtggtggaatggaat 48046442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 5959101 - 5958977
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| |  |||||||||||| |||||| ||||| ||||  || |||||||| |||||  | | |||    
T  5959101 agagttatgatacataaacacccttaagtggcaatacacctcttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacacttt 5959002  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  5959001 ctctttcttcttctcttctctcttc 5958977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 737
Target Start/End: Complemental strand, 19551297 - 19551225
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    |||||| ||||||||||||||||||  ||||||||| ||||||   ||||||||| |||||| ||||||||||    
T  19551297 ttccatcgtttggttttgtaaaaaagtaatggaatgaaatagaacatgatggaactcattccatccaatacca 19551225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Complemental strand, 27564835 - 27564671
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| ||||||||    | ||||||||| ||||| || | ||||    
T  27564835 gagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttc 27564736  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| | |||||||||||    
T  27564735 tcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggt 27564671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 272 - 435
Target Start/End: Complemental strand, 37926541 - 37926378
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    ||||||||||||||||| || |   ||| ||| |||||||||  || |||||||||||||||| ||||||||||| |  |||| |||  ||||  | | |    
T  37926541 atagagttatgatacatagatatctttaggtggcaatacatcttttaacacccacataaaaatctgacacgtggccacatggatcccgtacaagtacact 37926442  T
Q  372 ttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||||||  |||||||||||| |||| |  || |||| |||||||| |||||| | |||||||    
T  37926441 ttctcttttctcttctcttctctcttcctaatgtatggggtgtacaaggatgtatgtgaataaa 37926378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 41608593 - 41608470
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||| ||||||| || ||||||| |||| |||||| ||||| ||||| || ||||||||  ||||  | | ||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgtacaagtacactttc 41608494  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  41608493 tctttcttcttctcttctctcttc 41608470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 316 - 435
Target Start/End: Complemental strand, 45044619 - 45044500
Alignment:
Q  316 ttgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttgcatggagtgta 415  Q
    |||||||||| | |||||| ||||| || || |  |||||||| |||||||| |||||||||||  |||||||||||| |||| |  || |||| |||||    
T  45044619 ttgacacccatacaaaaatctgacatgtagccacatggaccccgcacaaacacattttctcttttctcttctcttctctcttcctaatgtatggggtgta 45044520  T
Q  416 caaagatgtacgagaataaa 435  Q
    ||| | |||| |||||||||    
T  45044519 caagggtgtatgagaataaa 45044500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 47748443 - 47748565
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  | |  |||| ||| ||||||| || |||||||||| |||||||| ||||| ||||| || |||| ||| |||||  ||| ||||    
T  47748443 gagttatgatacataaatacccttaggtggcaatacaccc-ttgacacccatataaaaatctgacatgtggccatatggatcccgcacaagtatactttc 47748541  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  47748542 tctttcttcttctcttctctcttc 47748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 439
Target Start/End: Original strand, 2581914 - 2582079
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||    
T  2581914 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 2582013  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    || |||  ||| |||||||| |||| |  | ||||  |||||||| | ||||  ||||||||||||    
T  2582014 cttttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgtattagaataaagggt 2582079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 273 - 418
Target Start/End: Complemental strand, 51898785 - 51898640
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||| ||||||||| ||||   ||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | ||    
T  51898785 tagagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactt 51898686  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaa 418  Q
    ||| |||| ||| |||||||| |||| |  ||||||| ||||||||    
T  51898685 tctatttcctctcctcttctctcttcctagtgcatggggtgtacaa 51898640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 585
Target Start/End: Original strand, 46205370 - 46205434
Alignment:
Q  521 gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca 585  Q
    |||||||| || ||||| || ||||||| ||||||||| | |||||||||||| |||||||||||    
T  46205370 gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca 46205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 737
Target Start/End: Original strand, 49764907 - 49764979
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    |||||||||||| ||||| ||||||| ||| | ||||||| |||| ||||||||| |||| | ||||||||||    
T  49764907 ttccattgtttgattttgcaaaaaatgaataggatggaatggagtatgatggaactcatttcatccaatacca 49764979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 739
Target Start/End: Original strand, 23473769 - 23473843
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatc 739  Q
    ||||||||||||| | |||||||| | ||||||||||||| ||   |||||||| ||||||| ||| ||||||||    
T  23473769 ttccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatcccataccatc 23473843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 276 - 398
Target Start/End: Original strand, 44453980 - 44454102
Alignment:
Q  276 agttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttct 375  Q
    ||||||||||||| ||||   ||| ||| |||||||||  |||| ||||||| |||||| ||||| |||| || ||||| ||||||||| || | ||| |    
T  44453980 agttatgatacatagacacctttaagtggcaatacatctcttgatacccacacaaaaatctgacatgtggttacgtggatcccacacaagcacacttttt 44454079  T
Q  376 ctttcatcttctcttctcacttc 398  Q
    ||||| |||  ||||||| ||||    
T  44454080 ctttcctctcatcttctctcttc 44454102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 452
Target Start/End: Complemental strand, 49811628 - 49811450
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||| || ||||  |||| ||||||||||| |  |||||| ||||| |||||| |||||||| || || | ||| || ||||| || | |||    
T  49811628 agagttatgatagatagacatccttaggtgacaatacaccatttgacatccacacaaaaatctgacacgtagccatatagactccgcacaagcacacttt 49811529  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacat 452  Q
    ||||||  ||| |||||||| |||| |  || |||  ||| |||| | |||| ||||||||||||| || |||| ||||    
T  49811528 ctcttttctctcctcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaagggtgtctatgtaacat 49811450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 38632422 - 38632257
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| |  || ||| ||||| |||||| |||||||| |  | ||||||||| ||||| || | |||    
T  38632422 agagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38632323  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
     |||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| | |||||||||||    
T  38632322 ttcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggt 38632257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 4e-62; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 600 - 852
Target Start/End: Complemental strand, 36657779 - 36657533
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaa-tggaa 698  Q
    |||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||        ||||||||||||||||||| ||| |||||    
T  36657779 ggctatatttggattgatggagagtgatggaatggaatggggtgggatggaaccatgttccat--------tgtttggttttgtaaaaaaaaaaatggaa 36657688  T
Q  699 tggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacat 797  Q
    || ||   |||||||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||||||| ||| |||||||| ||| ||||| ||    
T  36657687 tgaaaagaagtgtgatggaacccattccatccaataccattcatttaaccagattttcaatccacccaatttggggtgtatccaatggaatcgaaaatat 36657588  T
Q  798 tgataatacaatcacaactttgcccctaccttttatatttcatcatctgctcctc 852  Q
    || |||||||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  36657587 tgttaatacaatcacaattttgcccctaccttttctatttcatcatttgctcctc 36657533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 600 - 804
Target Start/End: Complemental strand, 23417387 - 23417195
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||| |||||||||     ||||||||||||||||||||||        |||||||||||||||||||  ||||||||    
T  23417387 ggctatgtttggattgatggagagtgatggaatgga-----gtgggatggaaccatgttccat--------tgtttggttttgtaaaaaaggaatggaat 23417301  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    || || |||| |||||||||||||||| ||||||||||  ||||   |||| ||||||||||| ||||||||| ||| |||||||| ||||||| |||||    
T  23417300 ggcatggagtatgatggaacccattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatggaacacatt 23417201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 32564526 - 32564403
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  ||| ||||| ||| ||||||| || |||||||||||| |||||| ||||| |||||||| |||||||| |||||| | | ||||    
T  32564526 gagttatgatacataaacattcttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggctatatggaccccgcacaaatacactttc 32564427  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  32564426 tctttcttcttctcttctctcttc 32564403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 268 - 442
Target Start/End: Original strand, 18207173 - 18207346
Alignment:
Q  268 accaatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaaca 367  Q
    ||||| ||||||||||||||| ||||| |||| ||| ||||||| |  |||||||||| | |||||| | ||||||||| | ||| ||||||||||| ||    
T  18207173 accaaaagagttatgatacatagacaaccttaggtggcaatacacctcttgacacccatacaaaaatctaacacgtggc-acgtgaaccccacacaagca 18207271  T
Q  368 tattttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatc 442  Q
     | |||||||||||||| |||||||| |||| |  || || |||||||||| | |||| || |||||||||||||    
T  18207272 cactttctctttcatctcctcttctctcttcctagtggatagagtgtacaagggtgtatgataataaagggtatc 18207346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 665 - 831
Target Start/End: Complemental strand, 261867 - 261701
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccattaaccaaattttc-attccacc 763  Q
    |||||||||||| |||||||||||| | |||||||||||| |  |||||||||| ||||||| || ||||| |  |||| ||  ||||||| ||||| |     
T  261867 ttccattgtttgattttgtaaaaaa-agatggaatggaatgggatgtgatggaatccattccatcaaatacaactcatttactcaattttccattcccct 261769  T
Q  764 caatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccctacctttt 831  Q
    |||||||| ||| |||||||||||||||| ||||| |||| ||||| |||| |||| ||||| |||||    
T  261768 caatttggggtgtatccaatgaaatggaacacattaataacacaattacaattttgtccctatctttt 261701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 602 - 803
Target Start/End: Original strand, 19625367 - 19625566
Alignment:
Q  602 ctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatgg 701  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||    ||  || | || ||||||||||||||| |||||   ||||||||||    
T  19625367 ctatgtttggattgatggagagtggtggaatggaatggaatgggatggaatagagt--caga-tttcattgtttggttttgcaaaaatgtaatggaatgg 19625463  T
Q  702 aatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattga 800  Q
    ||| || |||||||||||  ||||| ||||||||||  |||| | |||| ||| |||||| ||||| |||  ||| ||||||||  |||||| ||||| |    
T  19625464 aatggaatgtgatggaactaattccatccaataccactcattcatccaattttccattcctcccaaattgtggtgtatccaatgggatggaacacattaa 19625563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 8080484 - 8080319
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||| |||||||||| |||||||| |  | ||||||||| ||||| || | |||    
T  8080484 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 8080385  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| |||||||| |||| | |||||||| |||||||| | |||| | |||||||||||    
T  8080384 ctcttttctctcctcttctctcttcctattgcatggggtgtacaagggtgtatgggaataaagggt 8080319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 304 - 452
Target Start/End: Complemental strand, 16374895 - 16374747
Alignment:
Q  304 acaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgtt 403  Q
    ||||||||||| |||||| ||||| |||||| ||||||||||  | ||||| | ||||||| || |  |||||||||||||  | ||||| |||| |  |    
T  16374895 acaatacatcccttgacatccacacaaaaatctgacacgtggtcacgtggatctcacacaagcacacattctctttcatctctttttctctcttcctaat 16374796  T
Q  404 gcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacat 452  Q
    | ||||||||||||||| |||| ||||||||||||| || |||| ||||    
T  16374795 gtatggagtgtacaaaggtgtatgagaataaagggtgtctatgtaacat 16374747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 273 - 457
Target Start/End: Complemental strand, 46033903 - 46033719
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||||||||||||| || | ||||| ||| ||||||| || || |||||||||||||||| ||||||||||  |  || || || ||||| |||||||    
T  46033903 tagagttatgatacatagatattcttaggtggcaatacaccctttaacacccacataaaaatctgacacgtggtcacatgaactccgcacaagcatattt 46033804  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    |||||||  ||| ||||||||  ||| |  || |||| |||||||| | |||| ||||||||| ||| || |||| |||| ||||    
T  46033803 tctcttttctctcctcttctctattcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 46033719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 665 - 748
Target Start/End: Complemental strand, 5925250 - 5925167
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccattaacca 748  Q
    |||||||||||||||||||||||| || |||| |||||||||| | |||||||| ||||||| ||||||| ||| |||| ||||    
T  5925250 ttccattgtttggttttgtaaaaagtatatggtatggaatagaatatgatggaatccattccatccaatatcattcattcacca 5925167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 22343357 - 22343484
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    ||||||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||| | || |||||||| |||||  | |     
T  22343357 aatagagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacac 22343456  T
Q  371 tttctctttcatcttctcttctcacttc 398  Q
    |||||||||| |||||||||||| ||||    
T  22343457 tttctctttcttcttctcttctctcttc 22343484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 272 - 379
Target Start/End: Complemental strand, 36362016 - 36361909
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    ||||||| ||||||||| ||||  |||| ||| |||||||||| |||||||||||| |||||| |||||||| |  | ||||||||||||||| || | |    
T  36362016 atagagtaatgatacatagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacact 36361917  T
Q  372 ttctcttt 379  Q
    ||||||||    
T  36361916 ttctcttt 36361909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 38267040 - 38267163
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||||||||||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  38267040 gagtaatgatacatagacacccttatgtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 38267139  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||  ||| |||||||| ||||    
T  38267140 tcttttctctcctcttctctcttc 38267163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 41915737 - 41915864
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    ||||||||||||||||||  |||  |||| ||| ||||||| || |||||||| ||| |||||| ||||| ||||| || |||||||| |||||  | |     
T  41915737 aatagagttatgatacataaacacccttaggtggcaatacaccccttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaagtacac 41915836  T
Q  371 tttctctttcatcttctcttctcacttc 398  Q
    |||||||||| |||||||||||| ||||    
T  41915837 tttctctttcttcttctcttctctcttc 41915864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 272 - 398
Target Start/End: Original strand, 26296641 - 26296767
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    ||||||||||||||||| ||||  |||| ||||||||| | || || ||| |||||||||||| ||| ||||||| || |||||||| ||||| |  |||    
T  26296641 atagagttatgatacatagacatccttaggtgacaatataccctttaacatccacataaaaatctgatacgtggccatatggaccccgcacaagcgcatt 26296740  T
Q  372 ttctctttcatcttctcttctcacttc 398  Q
    ||||||||  ||| |||||||| ||||    
T  26296741 ttctcttttctctcctcttctctcttc 26296767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 41423768 - 41423846
Alignment:
Q  361 acaaacatattttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||| ||||||||||||||||||| |||||||| |||| |  ||||||| |||||||||| |||| |||||||||||||    
T  41423768 acaagcatattttctctttcatctcctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggt 41423846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 840
Target Start/End: Original strand, 12633429 - 12633613
Alignment:
Q  665 ttccattgtttggttttgtaaa-aaataa----atggaatggaatagagtgtgatggaacccattcctt---ccaatacca-tccattaaccaaattttc 755  Q
    |||||||||||||||||||||| ||||||    |||||||||| | |||||||||||||| |||||| |   ||||||||| ||  ||| |||| ||| |    
T  12633429 ttccattgtttggttttgtaaacaaataatggaatggaatggagtggagtgtgatggaactcattccatcgaccaataccactcatttagccaattttcc 12633528  T
Q  756 attccacccaatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccctaccttttatatttcat 840  Q
    ||||| ||||| || | ||| |||||||| |||| || ||||| |||||||||| |||| |||| |||||  |||| ||||||||    
T  12633529 attcctcccaaattagggtgtatccaatggaatgaaatacattaataatacaattacaattttgaccctattttttctatttcat 12633613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 452
Target Start/End: Complemental strand, 39256023 - 39255847
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||| |||| ||| ||||||| |  |||| ||||| | |||||| ||||||||||| | |||||| ||||||||  | | ||||    
T  39256023 gagttatgatacatagacaaccttaggtggcaatacaccacttgatacccatacaaaaatctgacacgtggc-acgtggactccacacaagaacactttc 39255925  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacat 452  Q
    |||||||||| |||||||| ||||  | || || || ||||||| | |||| || |||||||||| || |||| ||||    
T  39255924 tctttcatctcctcttctctcttcccggtggatagaatgtacaagggtgtatgataataaagggtgtctatgtaacat 39255847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 275 - 435
Target Start/End: Complemental strand, 4999614 - 4999454
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  ||||  || ||||||| |  |||||||||||| |||||| ||| |||| |  | ||||||||| |||||||| | ||||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacaccttttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacacactttc 4999515  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||| |||| |||||||| |||| |  ||||||| |||||||| | |||| |||||||||    
T  4999514 tcttttatctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 4999454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 36208172 - 36208296
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||  |||| |||  ||||||| |||||||||||||| |||||  ||||| ||||  | ||||||||  ||||| || |||||    
T  36208172 agagttatgatacatagacacccttaggtggtaatacattcattgacacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacatttt 36208271  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| ||| |||||||| ||||    
T  36208272 ctctttcctctcctcttctctcttc 36208296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 36362023 - 36362130
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    ||||||| ||||||||| ||||  |||| |||  ||||||||| |||||||||||| |||||| |||||||| |  | ||||||||||||||| || | |    
T  36362023 atagagtaatgatacatagacacccttaggtggtaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacact 36362122  T
Q  372 ttctcttt 379  Q
    ||||||||    
T  36362123 ttctcttt 36362130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 457
Target Start/End: Original strand, 21234401 - 21234583
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| ||||||||||| || ||||||| |||| |||||| |||||||| || |  || ||||| ||||| || ||||||    
T  21234401 gagttatgatacatagacatccttaggtgacaatacaccctttgacactcacacaaaaatttgacacgtagccacatgtaccccgcacaagcacattttc 21234500  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    |||| | ||| || | ||| |||| |  || |||| |||||||| | |||| ||||||||| ||| || |||| |||| ||||    
T  21234501 tcttacctctcctttcctctcttcctaatgtatggggtgtacaatggtgtatgagaataaaaggtgtctatgtaacattttcc 21234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 280 - 437
Target Start/End: Original strand, 3784000 - 3784157
Alignment:
Q  280 atgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    ||||||||| ||||  |||| ||| |||||||||  |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | |||||||||    
T  3784000 atgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 3784099  T
Q  380 catcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagg 437  Q
      ||| |||||||| |||| |  ||||||| ||||||||  ||||| | |||||||||    
T  3784100 tctctcctcttctctcttcctaatgcatggggtgtacaagaatgtatgtgaataaagg 3784157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 435
Target Start/End: Complemental strand, 19436288 - 19436127
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||||||||||| |  |||||||||||| |||||| |||||||| |  | ||||| ||| || || || | |||    
T  19436288 agagtaatgatacatagacatccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacacttt 19436189  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||||  ||||||||| || |||| |  ||||||| |||||||| | |||| |||||||||    
T  19436188 ctcttttctcttctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 19436127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 19329842 - 19330006
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| ||||||||    | ||||||||| ||||| || | ||||    
T  19329842 gagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttc 19329941  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| | |||||||||||    
T  19329942 tcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggt 19330006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 280 - 439
Target Start/End: Complemental strand, 32951588 - 32951429
Alignment:
Q  280 atgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    ||||||||| |||| |||||  ||||||||||||| || ||| ||||| |||||| | |||||| |  | ||||||||| ||||| || | |||||||||    
T  32951588 atgatacatagacactcttagatgacaatacatcctttaacatccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctcttt 32951489  T
Q  380 catcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
      ||| |||||||| |||| |  | ||||| |||||||| | |||| |||||||| ||||    
T  32951488 tctctcctcttctctcttcctaatacatggggtgtacaagggtgtatgagaataaggggt 32951429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 275 - 442
Target Start/End: Original strand, 35137533 - 35137700
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| |||||| || ||||  |||| ||| ||||||| || |||||||||||| |||||| | |||||| |  | ||||||||| |||||||| | ||||    
T  35137533 gagtaatgataaatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacactttc 35137632  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatc 442  Q
    |||||  ||| |||||||| |||| |  |||||||  ||||||| | |||| ||||| ||| ||||||    
T  35137633 tcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaacaaatggtatc 35137700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 40846213 - 40846090
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||| ||||||| || |||||| ||||| |||||| | ||| || | ||| |||||||| |||||| | | ||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccccttgacatccacacaaaaatctaacatgtagttatatggaccccgcacaaatacactttc 40846114  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  40846113 tctttcttcttctcttctctcttc 40846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 365
Target Start/End: Complemental strand, 42973048 - 42972955
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaa 365  Q
    |||||||| |||||||||  || ||| |||||| ||||||| ||||| ||||||||| |||| | ||||||||||| |  |||||||||||||||    
T  42973048 aatagagtaatgatacatgtactatcctatgtggcaataca-ccatttacacccacacaaaattctgacacgtggcaacttggaccccacacaaa 42972955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 585
Target Start/End: Complemental strand, 25029793 - 25029729
Alignment:
Q  521 gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca 585  Q
    |||||||| || ||||| || ||||||| ||||||||| | |||||||||||| |||||||||||    
T  25029793 gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca 25029729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 35468956 - 35468832
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  ||||  || |||||||||  ||||||||||||||||||| | | | ||| | ||||||||||  |||||||| | |||    
T  35468956 agagtaatgatacatagacatccttagatggcaatacatcatttgacacccacataaaaatctaatatgtgaccatgtggaccctgcacaaacacacttt 35468857  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| | | |||||||| ||||    
T  35468856 ctctttcctatcctcttctctcttc 35468832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 390
Target Start/End: Original strand, 38044196 - 38044312
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || |||||| ||||| |||||| ||||| || || || |||||||| |||||  | | |||    
T  38044196 agagttatgatacataaacacccttaggtggcaatacaccccttgacatccacacaaaaatctgacatgtagccatatggaccccgcacaagtacacttt 38044295  T
Q  374 ctctttcatcttctctt 390  Q
    ||||||| |||||||||    
T  38044296 ctctttcttcttctctt 38044312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 704
Target Start/End: Original strand, 29428919 - 29428958
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaat 704  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  29428919 ttccattgtttggatttgtaaaaaatgaatggaatggaat 29428958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 35522877 - 35522980
Alignment:
Q  276 agttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttct 375  Q
    ||||||||||||| ||||  |||| ||| ||||||| |  || ||||||||| |||||| ||||||||||| || |||| ||| ||||| || | |||||    
T  35522877 agttatgatacatagacatccttaagtggcaatacaccatttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttct 35522976  T
Q  376 cttt 379  Q
    ||||    
T  35522977 cttt 35522980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 7389388 - 7389493
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| |||||||  | |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||    
T  7389388 agagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 7389487  T
Q  374 ctcttt 379  Q
    ||||||    
T  7389488 ctcttt 7389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 8238243 - 8238336
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    ||||||| || |||||||||||| |||||| ||||| || |  || |||||||| |||||  | | |||||||||| |||||||||||| ||||    
T  8238243 caatacaccctttgacacccacacaaaaatctgacatgtagtcatatggaccccgcacaagtacactttctctttcttcttctcttctctcttc 8238336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 46374902 - 46374813
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaa 364  Q
    |||||||||||||| ||||  |||| ||| ||| ||| || || ||||||||| |||||| ||||||||||| |  |||||||| |||||    
T  46374902 gagttatgatacatagacatccttaggtggcaacacaccctttaacacccacacaaaaatctgacacgtggccacatggaccccgcacaa 46374813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 600 - 842
Target Start/End: Original strand, 11617182 - 11617422
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||||||||||||||| || |||  ||| |  |    ||||| |||||||||||||||||| ||||||| ||||||||    
T  11617182 ggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggataaaa--ccata-ttccattgtttggttttgcaaaaaatgaatggaat 11617278  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccattaa-ccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||| ||||| || | ||| |||||||| ||||||| ||||     
T  11617279 ggaatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattccccccaaattagtgtgtatccaatggaatggaatacata 11617378  T
Q  799 gataatacaatcacaactttgcccctaccttttatatttcatca 842  Q
     |||||||||| |||||| ||||||| | |||| ||||||||||    
T  11617379 aataatacaatgacaactatgcccctgcgttttctatttcatca 11617422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 600 - 792
Target Start/End: Original strand, 4943475 - 4943665
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||| ||| |||||||||||||||||||| |||  ||| |    |  ||||| |||||||||||||||||||||||||   |||||||    
T  4943475 ggctatgtttggattggtggtgagtggtggaatggaatagaatggagtgggatggag--ccata-ttccattgtttggttttgtaaaaaagggatggaat 4943571  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaa 792  Q
    ||||| ||||||||||||||||||||| ||||||||||  ||||    ||| ||| ||||||||||||||||| |||  ||||||| |||||||    
T  4943572 ggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccacccaatttggggtgtttccaatggaatggaa 4943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 665 - 769
Target Start/End: Complemental strand, 7506103 - 7505998
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca-tccattaaccaaattttcattccacc 763  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||| |||||||||| ||  |||||||| ||| |||||| ||    
T  7506103 ttccattgtttggttttgtaaaaaattaatggaatgaaatagagtgtgatggaatcaattccatccaataccactcatttaaccaattttccattccccc 7506004  T
Q  764 caattt 769  Q
    ||||||    
T  7506003 caattt 7505998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 665 - 821
Target Start/End: Original strand, 9159446 - 9159603
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatcca-ttaaccaaattttcattccacc 763  Q
    |||||||||||||||||||||||||  ||||||| ||||| || |||||||||||||||||| |||||||||| ||| ||| ||||  || |||||| ||    
T  9159446 ttccattgtttggttttgtaaaaaa--aatggaaaggaatggaatgtgatggaacccattccatccaataccacccatttatccaatcttccattccccc 9159543  T
Q  764 caattt--ggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcc 821  Q
     |||||  || ||| |||||||  ||||||| |||||||||||||| | |||| ||||||    
T  9159544 taatttgaggtgtgcatccaatagaatggaacacattgataatacagttacaattttgcc 9159603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 31008987 - 31009170
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| |||||||||||| | |  ||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | |||    
T  31008987 agagttatgatacataaacatccttaggtgacaatacattcttccacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 31009086  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    || |||| |||||||||||| |||| |  ||||||| |||||||||| |||| ||||||||||||| || |||| |||| ||||    
T  31009087 ctatttcctcttctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtctatgtaacattttcc 31009170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 14831814 - 14831978
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| |||| ||||| ||| ||||||| || ||||||||||||||||||| |||||||| |  | ||||| ||| ||||| || | ||||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 14831913  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    | |||  ||| |||||||| |||| |  ||||||| |||||||| |||||| | |||||||||||    
T  14831914 ttttttttctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggt 14831978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 665 - 803
Target Start/End: Original strand, 30084910 - 30085049
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacc 763  Q
    |||||||||||||||||| ||||    ||||||||||||| || ||||||||||| |||||| ||||||||||  |||| | |||| ||| |||||| ||    
T  30084910 ttccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcc 30085009  T
Q  764 caatttggagtgaatccaatgaaatggaaaacattgataa 803  Q
    ||| |||| ||| |||||||| ||||||| ||||| ||||    
T  30085010 caaattggggtgtatccaatggaatggaacacattaataa 30085049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 275 - 418
Target Start/End: Complemental strand, 35943992 - 35943849
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| ||| |||||||||  |||||||||||| |||||| |||||||| | || ||||| ||||||||| || | ||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacactttc 35943893  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaa 418  Q
    |||||| ||| ||||| || |||| |  ||||||| ||||||||    
T  35943892 tctttcctctcctcttttctcttcctagtgcatggggtgtacaa 35943849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 272 - 398
Target Start/End: Complemental strand, 2252271 - 2252145
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    |||||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |    
T  2252271 atagagttatgatacataaacatccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacact 2252172  T
Q  372 ttctctttcatcttctcttctcacttc 398  Q
    ||||||||| |||||||||||| ||||    
T  2252171 ttctctttcttcttctcttctctcttc 2252145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 15409711 - 15409546
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||  |||| |||||||||||| | |||||||||||| |||||| |||||||| || |  |||||||| ||||| || | | |    
T  15409711 agagttatgatacatagacatccttaggtgacaatacattctttgacacccacacaaaaatctgacacgtagccacatggaccccgcacaagcacactct 15409612  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| |||||||| |||| |  || |||| |||||||| | |||| | |||||||||||    
T  15409611 ctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgcgaataaagggt 15409546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 16327922 - 16328019
Alignment:
Q  296 cttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctc 393  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||||   ||||| ||| ||||||| || | ||| |||||||| ||||||||||    
T  16327922 cttaggtggcaatacatccattgacacccacataaaaatctgacacgtgttcatgtgcacctcacacaagcacactttttctttcattttctcttctc 16328019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 275 - 452
Target Start/End: Complemental strand, 33825424 - 33825247
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||| ||| |||| ||||| ||| |||||||  | ||||||||||||||||||| |||||||||   ||||| |||  |||||| || | ||||    
T  33825424 gagtaatgatgcatagacattcttaggtggcaatacactccttgacacccacataaaaatctgacacgtgttcatgtgaaccttacacaagcacactttc 33825325  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacat 452  Q
    ||||| ||||||||||||| |||| |  ||||||| ||||| || | |||| ||||||||| ||| || |||| ||||    
T  33825324 tcttttatcttctcttctctcttcctagtgcatggggtgtagaaggctgtatgagaataaatggtgtcaatgtaacat 33825247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 3921366 - 3921242
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||    
T  3921366 agagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 3921267  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  3921266 ctctttcttcttctcttctctcttc 3921242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 439
Target Start/End: Complemental strand, 33149738 - 33149574
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| |||  |||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | ||||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttc 33149639  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | ||||||||||||||||||    
T  33149638 tcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggt 33149574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 280 - 439
Target Start/End: Complemental strand, 18520979 - 18520820
Alignment:
Q  280 atgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||||||||    
T  18520979 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 18520880  T
Q  380 catcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
     |||| |||||||| |||| |  ||||||  |||||||| | |||| || ||||||||||    
T  18520879 tatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaagggt 18520820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 6679696 - 6679821
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||||||||||||| ||||   ||| ||| ||||||| |  |||||||||||| |||||| ||||||||||  |  |||||||| |||||||| ||||    
T  6679696 tagagttatgatacatagacatctttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacattt 6679795  T
Q  373 tctctttcatcttctcttctcacttc 398  Q
    |||||||  ||| |||||||| ||||    
T  6679796 tctcttttctctcctcttctctcttc 6679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 28177775 - 28177879
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| ||||||||||  |  |||||||| |||||||| | ||||    
T  28177775 gagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacactttc 28177874  T
Q  375 tcttt 379  Q
    |||||    
T  28177875 tcttt 28177879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 804
Target Start/End: Original strand, 29293199 - 29293312
Alignment:
Q  691 aaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatg 789  Q
    |||||||||||||  ||||| ||||||||||| ||| |||||| |||| |||| || |||||||||||||| |||||||||| | | ||||| || ||||    
T  29293199 aaatggaatggaacggagtgggatggaacccactccatccaatgccattcattaaatcaaattttcattccccccaatttgg-gggtatccagtggaatg 29293297  T
Q  790 gaaaacattgataat 804  Q
    ||| ||||| |||||    
T  29293298 gaatacattaataat 29293312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 435
Target Start/End: Original strand, 26720516 - 26720676
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| ||| ||||||| || || ||||| ||| |||||| ||||||||||| |  |||| ||| ||||| || | ||||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacactttc 26720615  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    |||||  |||||||||||| |||| |  || |||| |||||| | | |||| |||||||||    
T  26720616 tcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaa 26720676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 435
Target Start/End: Original strand, 26990265 - 26990425
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| ||| ||||||| || || ||||| ||| |||||| ||||||||||| |  |||| ||| ||||| || | ||||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacactttc 26990364  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    |||||  |||||||||||| |||| |  || |||| |||||| | | |||| |||||||||    
T  26990365 tcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaa 26990425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 439
Target Start/End: Original strand, 2740272 - 2740438
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | ||    
T  2740272 tagagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactt 2740371  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||||  ||| | |||||| |||| |  |||||||  ||||||| | |||| | |||||||||||    
T  2740372 tctcttttctctccccttctctcttcctaatgcatgggatgtacaagggtgtatgggaataaagggt 2740438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 809
Target Start/End: Complemental strand, 5248005 - 5247867
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacc 763  Q
    ||||||||||||||||||||||||| |||   ||||||||     ||||||||||||||||  ||||||||||  |||| |||||| ||| ||||||| |    
T  5248005 ttccattgtttggttttgtaaaaaaaaaaa--aatggaat-----gtgatggaacccattcaatccaataccactcattcaaccaattttccattccatc 5247913  T
Q  764 caatttggagtgaatccaatgaaatggaaaacattgataatacaat 809  Q
    ||||||   ||| | |||||  ||||||| ||||| ||||||||||    
T  5247912 caatttaaggtgtacccaatagaatggaacacattaataatacaat 5247867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 25831334 - 25831392
Alignment:
Q  324 cacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcat 382  Q
    |||| |||||| | ||||||||  |||||||||||||||||||| ||||||||||||||    
T  25831334 cacaaaaaaatctaacacgtggtcatgtggaccccacacaaacacattttctctttcat 25831392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 634
Target Start/End: Original strand, 30084858 - 30084892
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatgg 634  Q
    |||||||||||||||||||||||||||||||||||    
T  30084858 ggctatgtttggattgatggagagtggtggaatgg 30084892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 38296202 - 38296320
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||| |||||| ||| ||||||| |  || | ||||||| ||||||  ||||||| |||| ||||| || |||||| || | |||    
T  38296202 agagttatgatacatagactatcttaggtgtcaatacacctcttaatacccacacaaaaatcagacacgtagctacgtggatccaacacaagcacacttt 38296301  T
Q  374 ctctttcatcttctcttct 392  Q
    ||| ||||||| |||||||    
T  38296302 ctcattcatctcctcttct 38296320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 435
Target Start/End: Original strand, 13811659 - 13811812
Alignment:
Q  282 gatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttca 381  Q
    ||||||| ||||  |||| ||| |||||||||  |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||||||       
T  13811659 gatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttctc 13811758  T
Q  382 tcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||| |||||||| |||| |  |||||||  ||||||| |||||| | |||||||    
T  13811759 tctcctcttctctcttcctaatgcatgggatgtacaaggatgtatgggaataaa 13811812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 36733043 - 36732878
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||  ||||||| || |||||||||||| |||||| |||||| | |  | ||||||||| ||||| || | |||    
T  36733043 agagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacacttt 36732944  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| |||||||| |||| |  ||||||  |||||||| | |||| | |||||||||||    
T  36732943 ctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggt 36732878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 418
Target Start/End: Original strand, 35785199 - 35785342
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| |||||||| | || ||||| ||| ||||| || | ||||    
T  35785199 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaatcacactttc 35785298  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaa 418  Q
    |||||  |||  ||||||| |||| |  ||||||| ||||||||    
T  35785299 tcttttctctcatcttctctcttcctaatgcatggggtgtacaa 35785342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 435
Target Start/End: Original strand, 9603812 - 9603973
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| |||||||||  |||  |||| |||| ||||||  |||| ||||| ||| |||||| |||||| |||  || ||||||||| |||| || | |||    
T  9603812 agagtaatgatacatatacatccttaggtgataatacactcattcacacctacacaaaaatctgacacatggtcatatggaccccatacaatcacacttt 9603911  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||||||| |  ||||||| |||| |  ||| |||  ||||||||| |||| |||||||||    
T  9603912 ctctttcatttcgtcttctctcttcttagtgcttgggatgtacaaaggtgtatgagaataaa 9603973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 637
Target Start/End: Original strand, 41483507 - 41483544
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaat 637  Q
    |||||||||||||||||||||  |||||||||||||||    
T  41483507 ggctatgtttggattgatggaatgtggtggaatggaat 41483544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 600 - 842
Target Start/End: Complemental strand, 39440041 - 39439801
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||||||||||||||| || |||  ||| |  |    ||||| |||||||||||||||||| ||||||  ||||||||    
T  39440041 ggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggataaaa--ccata-ttccattgtttggttttgcaaaaaaagaatggaat 39439945  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||| |||||||||| ||| |||||||| ||||||| ||||     
T  39439944 ggaatggagtgtgatggaactcattccatccaataccacccattaaaccaaattttcattccccccaatttggggtgtatccaatggaatggaatacata 39439845  T
Q  799 gataatacaatcacaactttgcccctaccttttatatttcatca 842  Q
     |||||| ||| |||||| ||||||| ||||||  |||||||||    
T  39439844 aataatataatgacaactatgcccctgccttttccatttcatca 39439801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 600 - 804
Target Start/End: Original strand, 27011134 - 27011331
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||  ||||||||    
T  27011134 ggctatgtttggattgatggagagtgatggaatggaatggagtgggatggaaccatgttcc--------attgtttggttttgtaaaaaaggaatggaat 27011225  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| ||||||||||||||||||||| ||||||||||  ||||   |||| ||||||||||| ||||||||| ||| |||||||| |||| || |||||    
T  27011226 ggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatgaaacacatt 27011325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 273 - 457
Target Start/End: Original strand, 35536624 - 35536808
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||| ||||||||| ||||  |||||||| ||||||| |  ||||||||||||||||||| ||||||||||  |||||||||  |||||| || | ||    
T  35536624 tagagtaatgatacatagacatccttatgtggcaatacaccatttgacacccacataaaaatgtgacacgtggtcatgtggaccttacacaagcacactt 35536723  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
     |||||||||||||||||||| |||| |  ||||||| ||||| || | |||| ||||||||| ||| || |||| |||| ||||    
T  35536724 cctctttcatcttctcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcc 35536808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 600 - 792
Target Start/End: Complemental strand, 42029466 - 42029276
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatg-----gaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaat 694  Q
    |||||||||||||||| ||| |||||||||||||     |||| |||||||||||| |||     ||   |||||||||||||||||||||||||   ||    
T  42029466 ggctatgtttggattggtggtgagtggtggaatggaatggaatggagtgggatggagcca-----ca---ttccattgtttggttttgtaaaaaagggat 42029375  T
Q  695 ggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaa 792  Q
    |||||||||| |||| |||||||||||||||| ||||||||||  ||||    ||| ||||||||||||||||||||| ||| |||||||| |||||||    
T  42029374 ggaatggaatggagtatgatggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaa 42029276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 8956758 - 8956885
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    |||||||| ||||||||| ||||  |||||||| |||||||||| ||||||||||||||||||| |||||||||   |||||||||  |||||| || |     
T  8956758 aatagagtaatgatacatagacatccttatgtggcaatacatcctttgacacccacataaaaatgtgacacgtgttcatgtggaccttacacaagcacac 8956857  T
Q  371 tttctctttcatcttctcttctcacttc 398  Q
    || |||||||||||||||||||| ||||    
T  8956858 ttcctctttcatcttctcttctctcttc 8956885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 275 - 457
Target Start/End: Complemental strand, 14623939 - 14623757
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| || ||||||||||||||||||| ||||| |||   ||||||||| ||||||| || | ||||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcacactttc 14623840  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    ||||||||||||||||||| |||  |  ||||||  ||||| || |||||| ||||||||| ||| || |||| |||| ||||    
T  14623839 tctttcatcttctcttctctctttctagtgcatgaggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 14623757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 25395435 - 25395274
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    ||||| ||||||||||  |||  |||||||| | |||||||| || | ||||||| |||||| ||||| |||||||| | ||||||||||||||| ||||    
T  25395435 tagagctatgatacataaacatccttatgtggccatacatcccttaatacccacacaaaaatctgacatgtggctatatagaccccacacaaacacattt 25395336  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    |||||||||||||||||| || |||  |  | ||||| ||||||||||||||| ||| |||||    
T  25395335 tctctttcatcttctcttttctctttctagtacatgg-gtgtacaaagatgtatgaggataaa 25395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 600 - 803
Target Start/End: Original strand, 25045315 - 25045521
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtg-----ggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaat 694  Q
    |||||||||||||||||||||||||||||||||||||| || ||     ||||||||    |||  ||   ||||||||||||||||| ||||    |||    
T  25045315 ggctatgtttggattgatggagagtggtggaatggaatggaatgaaatgggatggaatagagttagat---tccattgtttggttttgcaaaattgtaat 25045411  T
Q  695 ggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaa 793  Q
    |||||||||| || ||||||||||| |||||| ||||||||||  |||| | |||| ||| |||||| ||||| |||| ||| |||||||| |||||||     
T  25045412 ggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggtgtgtatccaatggaatggaac 25045511  T
Q  794 acattgataa 803  Q
    ||||| ||||    
T  25045512 acattaataa 25045521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 13898134 - 13898037
Alignment:
Q  296 cttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctc 393  Q
    |||| ||| ||||||| || ||||||||||||||||||| |||||||||   ||||||||| ||||||| || | |||||||||||||||||||||||    
T  13898134 cttaggtggcaatacaccccttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcacactttctctttcatcttctcttctc 13898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 271 - 393
Target Start/End: Original strand, 45320366 - 45320488
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    |||||||||||| || |||||||| |||| |||||||||||  |||| |||| |||| |||||| ||| |||| | |||||||||  |||||||| | ||    
T  45320366 aatagagttatgttaaattgacaaccttaagtgacaatacactcattaacactcacacaaaaatctgatacgtagttatgtggacttcacacaaatacat 45320465  T
Q  371 tttctctttcatcttctcttctc 393  Q
    ||||| |||||||| ||||||||    
T  45320466 tttctttttcatctcctcttctc 45320488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 316 - 425
Target Start/End: Complemental strand, 1758515 - 1758407
Alignment:
Q  316 ttgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttgcatggagtgta 415  Q
    |||||||||||| |||||| |||||  ||| || |||||| ||||||||||| |||||||||||||||| |||||||| |||| |  ||||||| |||||    
T  1758515 ttgacacccacacaaaaatctgacatatggttacgtggactccacacaaacacattttctctttcatctcctcttctctcttcctaatgcatgg-gtgta 1758417  T
Q  416 caaagatgta 425  Q
    ||||| ||||    
T  1758416 caaaggtgta 1758407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 280 - 457
Target Start/End: Complemental strand, 30801828 - 30801651
Alignment:
Q  280 atgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    ||||||||| ||||  |||| |||| |||||| || |||| ||||||| |||||||||||| || |  || |||||||||||||| || |||||||||||    
T  30801828 atgatacatagacacccttaggtgataatacaccctttgatacccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctcttt 30801729  T
Q  380 catcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    | |||  ||||||| |||| |  | ||||| |||||||| | |||| ||||||||| ||| || |||| |||| ||||    
T  30801728 cctctcatcttctctcttcctagtacatggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcc 30801651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 673 - 784
Target Start/End: Complemental strand, 2230209 - 2230102
Alignment:
Q  673 tttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccattaac-caaattttcattccacccaatttgg 771  Q
    |||||||||||||||||| |||| ||||||||     ||||||||||||||| | |||||||||||||||| || ||| |||||||||  | ||||||||    
T  2230209 tttggttttgtaaaaaatgaatgaaatggaat-----gtgatggaacccattgcatccaataccatccattcactcaatttttcattctcctcaatttgg 2230115  T
Q  772 agtgaatccaatg 784  Q
    |||| ||||||||    
T  2230114 agtgtatccaatg 2230102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 418
Target Start/End: Complemental strand, 41189865 - 41189721
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| |||||||||  ||||||||||||||||||| ||||||||||| |  |||||||| ||||| || | |||    
T  41189865 agagttatgatacatatacatccttaggtggcaatacatcatttgacacccacataaaaatttgacacgtggccacatggaccccgcacaagcacacttt 41189766  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaa 418  Q
    ||||||  ||| |||||||  |||| |  || |||||||||||||    
T  41189765 ctcttttctctcctcttctttcttcctaatgtatggagtgtacaa 41189721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 53982011 - 53982175
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 53982110  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| | |||||||||||    
T  53982111 tcttttctctcctcttctctcttcctaatgcatggggtgtacaaggttgtatgggaataaagggt 53982175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 600 - 651
Target Start/End: Original strand, 32278316 - 32278367
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaa 651  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  32278316 ggctatgtttggattgatggagagtggtggaatggaatggaatgggatggaa 32278367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 603 - 700
Target Start/End: Original strand, 44713184 - 44713273
Alignment:
Q  603 tatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatg 700  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| |||     ||   ||||||||||| |||||||||||||| |||||||||    
T  44713184 tatgtttggattgatggagagtggtggaatggaatggagagggatggagcca-----ca---ttccattgtttagttttgtaaaaaattaatggaatg 44713273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 45058652 - 45058530
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||| ||||||| || ||||||||||||||||||| ||||| ||| | || |||||||| |||||  ||| ||||    
T  45058652 gagttatgatacataaacacccttaggtggcaatacaccc-ttgacacccacataaaaatctgacatgtgaccatatggaccccgcacaagtatactttc 45058554  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  45058553 tctttcttcttctcttctctcttc 45058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 11348023 - 11347858
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||  |||| |||||||||||||| |||||| ||||| |||||| ||||||||||| |  |||||||  || || || | |||    
T  11348023 agagttatgatacatagacatccttaggtgacaatacatcctttgacatccacacaaaaatctgacacgtggccacatggaccctgcataagcacacttt 11347924  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| |||||||| |||| |  || |||| ||||| || | |||| | |||||||||||    
T  11347923 ctcttttctctcctcttctctcttcctaatgtatggggtgtataagggtgtatgggaataaagggt 11347858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 665 - 792
Target Start/End: Original strand, 25909352 - 25909480
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatta-accaaattttcattccacc 763  Q
    ||||||||||||||||||||| || | ||||||||| |||  | | | ||||||| |||||| |||||||||| ||| ||  |||| |||||||||  ||    
T  25909352 ttccattgtttggttttgtaataagtgaatggaatgaaatgaaatataatggaactcattccatccaataccacccactattccaatttttcattctccc 25909451  T
Q  764 caatttggagtgaatccaatgaaatggaa 792  Q
    |||||||| ||| || |||||||||||||    
T  25909452 caatttggggtgtatgcaatgaaatggaa 25909480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 457
Target Start/End: Original strand, 8076393 - 8076575
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| |||||||||  |||  |||| ||| || |||| || |||||||||||| |||||| | |||||| |  | ||||||||| ||||| || | ||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttc 8076492  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    |||||| ||| |||||||| |||| |  ||||||| |||||||||  |||| ||||||||| ||| || |||| |||| ||||    
T  8076493 tctttcctctcctcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacattttcc 8076575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 33118952 - 33118846
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||  |||| ||||||||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| || ||||| | |||    
T  33118952 agagttatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatccctcagaaacacacttt 33118853  T
Q  374 ctctttc 380  Q
    |||||||    
T  33118852 ctctttc 33118846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 24700056 - 24699931
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||| ||||||||| ||||  ||||  || ||||||| |  ||||||||||||||||||| || |||||||| | ||||||||   ||||||| | ||    
T  24700056 tagagtaatgatacatagacatccttagttggcaatacaccttttgacacccacataaaaatctggcacgtggccacgtggaccctgtacaaacacactt 24699957  T
Q  373 tctctttcatcttctcttctcacttc 398  Q
    |||||||| ||| |||||||| ||||    
T  24699956 tctctttcctctcctcttctctcttc 24699931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 26141632 - 26141515
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| ||| ||||||| || || ||||||||| |||||| ||||||||||  |  |||||||||||||| || | ||||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacactttc 26141533  T
Q  375 tctttcatcttctcttct 392  Q
    |||||  ||| |||||||    
T  26141532 tcttttctctcctcttct 26141515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 439
Target Start/End: Original strand, 49607413 - 49607578
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||| ||||||||| || | |||    
T  49607413 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacacttt 49607512  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| ||||| || |||| |  ||||||  |||||||| | |||| | |||||||||||    
T  49607513 ctcttttctctcctcttttctcttcctaatgcatgacgtgtacaagggtgtatgggaataaagggt 49607578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 33644200 - 33644364
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||  ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 33644299  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| ||||| || | |||| | |||||||||||    
T  33644300 tcttttctctcctcttctctcttcctaatgcatggggtgtataagggtgtatgggaataaagggt 33644364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 733
Target Start/End: Complemental strand, 40026151 - 40026083
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaat 733  Q
    |||||||||||| ||||||||||||| ||| ||||||||| || ||||| |||||| ||||| ||||||    
T  40026151 ttccattgtttgattttgtaaaaaatgaatagaatggaatggaatgtgaaggaacctattccatccaat 40026083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 51419460 - 51419356
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  ||||  ||||||||||||| || ||||||||| |||||| ||||||||||| |  | |||||| ||||| || | ||||    
T  51419460 gagttatgatacatagacatccttagatgacaatacatcctttaacacccacacaaaaatctgacacgtggccacatagaccccgcacaagcacactttc 51419361  T
Q  375 tcttt 379  Q
    |||||    
T  51419360 tcttt 51419356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 669 - 826
Target Start/End: Original strand, 23420240 - 23420401
Alignment:
Q  669 attgtttggttttgtaaaaaata--aatggaatggaatagagtgtgatggaacccattccttccaataccatccattaaccaaattttc--attccaccc 764  Q
    ||||||||||||||||||||| |  ||| ||||||| | |||||| ||||||| |||| | |||||||||| | ||| | | |||||||  ||||| |||    
T  23420240 attgtttggttttgtaaaaaaaaggaatagaatggagtggagtgtaatggaactcattacatccaataccacctatttaaccaattttccaattcctccc 23420339  T
Q  765 aatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccctac 826  Q
    | | ||| ||| || |||||||||| || ||||| |||| ||||| |||| |||| ||||||    
T  23420340 attgtggggtgtatgcaatgaaatgaaacacattaataacacaattacaattttgtccctac 23420401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 35965875 - 35965804
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtgg 345  Q
    ||||| |||||||||  |||  |||| |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  35965875 agagtaatgatacatatacatccttaagtgataatacatcctttgacacccacataaaaatctgacacgtgg 35965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 17470403 - 17470565
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||| ||||||||| ||||   ||| ||| ||||||| |  || ||||||||| |||||| |||||||| |  | ||||||||||||||| || | ||    
T  17470403 tagagtaatgatacatagacacctttaggtggcaatacaccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactt 17470502  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    |||||||  |||  ||||||| |||| |  |||||||  |||||||| ||||| |||||||||    
T  17470503 tctcttttctctcatcttctctcttcctaatgcatgggatgtacaaatatgtatgagaataaa 17470565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 31456719 - 31456853
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttg 404  Q
    ||||||| || |||||||||||| |||||| |||||||| |  ||||||||||| ||||| || | |||||||||  ||| ||||| || |||| |  ||    
T  31456719 caatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcctcttttctcttcctaatg 31456818  T
Q  405 catggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||| |||||||| | || | | |||||||||||    
T  31456819 catggggtgtacaagggtgcatgggaataaagggt 31456853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 36331388 - 36331306
Alignment:
Q  316 ttgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||||||||| |||||||||||| ||||    
T  36331388 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctcttc 36331306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 637
Target Start/End: Complemental strand, 2230279 - 2230242
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaat 637  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2230279 ggctatgcttggattgatggagagtggtggaatggaat 2230242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 54868996 - 54868891
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| |||||||| | || ||||||||| ||||| || | |||    
T  54868996 agagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacacttt 54868897  T
Q  374 ctcttt 379  Q
    ||||||    
T  54868896 ctcttt 54868891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 737
Target Start/End: Complemental strand, 29765337 - 29765266
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    ||||||||||||| ||||||||| |||| ||||||||||| |||  |||||||| | ||||| ||||||||||    
T  29765337 ttccattgtttggctttgtaaaacataa-tggaatggaatggagcatgatggaatcaattccatccaatacca 29765266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 585
Target Start/End: Complemental strand, 52286190 - 52286126
Alignment:
Q  521 gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca 585  Q
    |||||||| || ||||| || ||||||| ||||||||| | |||||||||||| |||||||||||    
T  52286190 gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca 52286126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 640
Target Start/End: Original strand, 23407925 - 23407964
Alignment:
Q  601 gctatgtttggattgatggagagtggtggaatggaataga 640  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  23407925 gctatgtttggattggtagagagtggtggaatggaataga 23407964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 11907370 - 11907488
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||  |||| |||||||||||  | |  |||| |||| |||||| ||||| ||||  || |||||||| ||||| || |||||    
T  11907370 agagttatgatacatagacacccttaggtgacaatacacacctgaacactcacacaaaaatctgacatgtggtcatatggaccccgcacaagcacatttt 11907469  T
Q  374 ctctttcatcttctcttct 392  Q
    ||||||  ||| |||||||    
T  11907470 ctcttttctctcctcttct 11907488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 41080749 - 41080830
Alignment:
Q  316 ttgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    |||||||||||  |||||| ||| | ||||  |||||||||| |||||| || |||||||||||||||| |||||||| ||||    
T  41080749 ttgacacccacgcaaaaatctgatatgtggtcatgtggaccc-acacaagcacattttctctttcatctcctcttctctcttc 41080830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 447
Target Start/End: Original strand, 9563026 - 9563171
Alignment:
Q  302 tgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtg 401  Q
    |||||||||| || |||||| ||| |||||||| |||||||| |  | ||||| ||  |||||||| | ||||||| |  ||| |||||||| |||| |     
T  9563026 tgacaatacaacctttgacatccatataaaaatctgacacgtagtcacgtggatcctgcacaaacacactttctctcttctctcctcttctctcttccta 9563125  T
Q  402 ttgcatggagtgtacaaagatgtacgagaataaagggtatccatgt 447  Q
     ||||||   ||||||||| |||| | |||||||||||||| ||||    
T  9563126 atgcatgagttgtacaaaggtgtatgggaataaagggtatctatgt 9563171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 11095454 - 11095385
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgt 343  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| ||||||||    
T  11095454 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgt 11095385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 787
Target Start/End: Original strand, 23466708 - 23466829
Alignment:
Q  669 attgtttggttttgt-aaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatcca-ttaaccaaattttca-ttccaccca 765  Q
    ||||||||||||||| ||||||  ||| |||||||||  ||||| ||||||| |||| | |||||||||| | | |||||||| ||| || |||| ||||    
T  23466708 attgtttggttttgtaaaaaaaggaatagaatggaatgtagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctccca 23466807  T
Q  766 atttggagtgaatccaatgaaa 787  Q
    |||||| ||| || ||||||||    
T  23466808 atttggggtgtatgcaatgaaa 23466829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 435
Target Start/End: Original strand, 35093584 - 35093745
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||| ||||||| |||||  ||| ||||||||||| |  |||||| ||||  |||||| ||||| ||||  ||||| || ||| |||| || | |||    
T  35093584 agagttacgatacatagacaactttaggtgacaatacaacatttgacatccacgcaaaaatctgacatgtggtcatgtgaactccatacaagcacacttt 35093683  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||| |||||| | ||||| |||| |  ||||||   ||||||||| |||| |||||||||    
T  35093684 ctcttgcatctttttttctctcttcctagtgcatgagatgtacaaaggtgtatgagaataaa 35093745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 42823133 - 42823234
Alignment:
Q  297 ttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcact 396  Q
    |||||||  |||||| || |||||||||||| |||||| ||||| ||||  || |||||||| || ||  ||| |||||||||| | |||||||||| ||    
T  42823133 ttatgtggtaatacaccccttgacacccacaaaaaaatttgacatgtggtcatatggaccccgcataagtatactttctctttcttattctcttctctct 42823232  T
Q  397 tc 398  Q
    ||    
T  42823233 tc 42823234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 5e-49; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 603 - 842
Target Start/End: Original strand, 35292001 - 35292233
Alignment:
Q  603 tatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatgga 702  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||        |||||||||||||| ||||||  |||||||||||    
T  35292001 tatgtttggattgatggagagtggtggaatggaatggagtgggataaaaccatattcc--------attgtttggttttgcaaaaaaggaatggaatgga 35292092  T
Q  703 atagagtgtgatggaacccattccttccaataccatccattaa-ccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattgat 801  Q
    || |||||||||| ||| |||||  |||||||||| ||||||| ||||||||||||| |  ||||||||| ||| |||||||| ||||||| ||||  ||    
T  35292093 atggagtgtgatgtaactcattcaatccaataccacccattaagccaaattttcatttcctccaatttggggtgtatccaatggaatggaatacataaat 35292192  T
Q  802 aatacaatcacaactttgcccctaccttttatatttcatca 842  Q
    |||||||| |||||| ||||||| |||||| ||||||||||    
T  35292193 aatacaatgacaactatgcccctgccttttctatttcatca 35292233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 606 - 814
Target Start/End: Original strand, 50859126 - 50859327
Alignment:
Q  606 gtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatggaata 705  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||        |||||||||||||||||||||  | ||| |||||||     
T  50859126 gttttgattgatgaagagtggtggaatggaatggagtgggatggaagcatgttcc--------attgtttggttttgtaaaaaaagagtgggatggaatg 50859217  T
Q  706 gagtgtgatggaacccattccttccaataccatcca-ttaaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattgataat 804  Q
    |||||||||||||  |||||| |||||||||| ||| ||| ||||||| ||||||| |||||||||| ||| |||||||| ||||||| ||||| |||||    
T  50859218 gagtgtgatggaattcattccatccaataccacccatttagccaaattgtcattcctcccaatttggggtgtatccaatggaatggaacacattaataat 50859317  T
Q  805 acaatcacaa 814  Q
    ||||| ||||    
T  50859318 acaattacaa 50859327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 601 - 754
Target Start/End: Original strand, 3121182 - 3121328
Alignment:
Q  601 gctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatg 700  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||        |||||||||||||| ||||||  |||||||||    
T  3121182 gctatgtttggattgatggagagtggtggaatggaatggagtgggataaaaccatattcc--------attgtttggttttgcaaaaaaagaatggaatg 3121273  T
Q  701 gaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaatttt 754  Q
    |||| |||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  3121274 gaatggagtgtgatggaactcattccatccaataccatccattaaaccaaatttt 3121328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 665 - 792
Target Start/End: Original strand, 22405046 - 22405174
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacc 763  Q
    |||||||||||||||||||||||||   |||||||||||| |||||||||||||| |||||| ||||||||||  ||||    ||| ||| |||||||||    
T  22405046 ttccattgtttggttttgtaaaaaaaggatggaatggaatggagtgtgatggaactcattccatccaataccaatcattccttcaattttccattccacc 22405145  T
Q  764 caatttggagtgaatccaatgaaatggaa 792  Q
    |||||||||||| |||||||| |||||||    
T  22405146 caatttggagtgtatccaatggaatggaa 22405174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 671 - 798
Target Start/End: Original strand, 31227714 - 31227841
Alignment:
Q  671 tgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca-tccattaaccaaattttcattccacccaattt 769  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||  |||||| |||||||||| ||  |||||||| |||||||||| ||||| ||    
T  31227714 tgtttggttttgtaaaaaatgaatggaatggaatgaagtgtgatggaaatcattccatccaataccactcatttaaccaatttttcattcc-cccaaatt 31227812  T
Q  770 ggagtgaatccaatgaaatggaaaacatt 798  Q
    |||||| |||||||| ||||||| |||||    
T  31227813 ggagtgtatccaatggaatggaatacatt 31227841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 665 - 815
Target Start/End: Original strand, 46944056 - 46944207
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca-tccattaaccaaattttcattccacc 763  Q
    ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||| |||||||||| ||  ||   ||| ||| |||||||||    
T  46944056 ttccattgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaataccactcattttgtcaattttccattccacc 46944155  T
Q  764 caatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaac 815  Q
    |||||||| ||| |||||||| |||| |  ||||| |||||| ||| |||||    
T  46944156 caatttggggtgtatccaatggaatgtagcacattaataatataattacaac 46944207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 600 - 732
Target Start/End: Complemental strand, 41223838 - 41223714
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||  | |||     ||| |   |||||||||||| |||||||||| ||||||||    
T  41223838 ggctatgtttggattgatggagagtgatggaatggaatggagtgggatatatcca-----catcc---cattgtttggttatgtaaaaaatgaatggaat 41223747  T
Q  700 ggaatagagtgtgatggaacccattccttccaa 732  Q
    ||||| ||||||||||||||||||||| |||||    
T  41223746 ggaatggagtgtgatggaacccattccatccaa 41223714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 600 - 803
Target Start/End: Complemental strand, 35033998 - 35033797
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||||||||||||||| || |||| |||||  | ||  || | |||||||||||||||||| ||||    ||||||||    
T  35033998 ggctatgtttggattgatggagagtggtggaatggaatggaatgggttggaataaagt--caga-ttccattgtttggttttgcaaaattgtaatggaat 35033902  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| || ||||||||||| |||||| ||||||||||  |||| | |||| ||| |||||| ||||| || |  || |||||||| ||||||| |||||    
T  35033901 ggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattaggatgtatccaatggaatggaacacatt 35033802  T
Q  799 gataa 803  Q
     ||||    
T  35033801 aataa 35033797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 603 - 771
Target Start/End: Original strand, 48084633 - 48084799
Alignment:
Q  603 tatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaat-----aaatgga 697  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||     ||   ||||||||||||||||||||||||||      ||| ||    
T  48084633 tatgtttggattgatggagagtggtggaatggaatggagtgggatgaaacca-----ca---ttccattgtttggttttgtaaaaaattaatagaattga 48084724  T
Q  698 atggaatagagtgtgatggaacccattccttccaatacca-tccattaaccaaattttcattccacccaatttgg 771  Q
    ||||||| |||| | ||||||| |||| | |||||||||| ||  |||||||| |||||||||| ||||||||||    
T  48084725 atggaatggagtcttatggaactcatttcatccaataccactcatttaaccaatttttcattccccccaatttgg 48084799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 596
Target Start/End: Complemental strand, 18895337 - 18895213
Alignment:
Q  474 tttgggagagattgcagaaaatacaacatgcctcacacaatttt--gtggcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaa 571  Q
    ||||||||| ||||||| ||| |||||||| |||||||||||||  |||||||||||||| ||||||| || ||||| |||||||||  |||| || |||    
T  18895337 tttgggagatattgcaggaaaaacaacatgtctcacacaatttttagtggcatttgagaagatggtgagaaggtggcgacaattagaggttgagaacgaa 18895238  T
Q  572 ttaaaaaatagccagagtgcacctc 596  Q
    || |||||||| |||||||| ||||    
T  18895237 ttcaaaaatagtcagagtgcgcctc 18895213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 274 - 435
Target Start/End: Original strand, 47104543 - 47104704
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| |||||| || |||| |||||  ||||||||||  |  ||||||||||| |||||| |||||||||| | | | ||||||||||||||| | |||    
T  47104543 agagtaatgatatatagacattcttagatgacaatacactctctgacacccacacaaaaatttgacacgtggttttattgaccccacacaaacacacttt 47104642  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||||||||| |||||||| |||| |  ||||||  |||||| |  |||||||||||||||    
T  47104643 ctctttcatctcctcttctctcttcttaatgcatgaggtgtactagaatgtacgagaataaa 47104704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 48183150 - 48182985
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||    
T  48183150 agagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 48183051  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| |||||||||||||    
T  48183050 ctcttttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagggt 48182985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 415
Target Start/End: Complemental strand, 8343263 - 8343123
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||| |||||||||| |||||||| |||||||||| ||||| ||||| || |||||||| || ||  ||| ||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatcctttgacacctacataaaaatctgacatgtggccatatggaccccgcataagtatactttc 8343164  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgta 415  Q
    |||||| |||||||||||| |||| |  | |||||||||||    
T  8343163 tctttcttcttctcttctctcttcctaatacatggagtgta 8343123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 665 - 737
Target Start/End: Complemental strand, 21263702 - 21263630
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    |||||||||||||||||||||||||   ||||||||| || ||||||||||||||||||||| ||||||||||    
T  21263702 ttccattgtttggttttgtaaaaaagggatggaatgggatggagtgtgatggaacccattccatccaatacca 21263630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 274 - 457
Target Start/End: Complemental strand, 50052529 - 50052346
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||    
T  50052529 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 50052430  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    ||||||| ||| |||||||| |||| |  |||||   |||||||||| |||| | ||||||||||| || |||| |||| ||||    
T  50052429 ctctttcctctcctcttctctcttcctagtgcataaggtgtacaaaggtgtatgggaataaagggtgtctatgtaacattttcc 50052346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 24995177 - 24995043
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttg 404  Q
    ||||||| || ||||||||||||||||||| |||||||| |  | ||||||||| ||||| || |||||||||||  ||| |||||||| |||| |  ||    
T  24995177 caatacaccctttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttttctctcctcttctctcttcttaatg 24995078  T
Q  405 catggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||| |||||||| | |||| | |||||||||||    
T  24995077 catggggtgtacaatggtgtatgggaataaagggt 24995043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 665 - 842
Target Start/End: Complemental strand, 4292759 - 4292583
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca-tccattaaccaaattttcattccacc 763  Q
    |||||||||||||||||| ||||||  ||||||||||||| | |||||||||||| |||||| |||||||||| |   ||||| |  ||| |||||| |     
T  4292759 ttccattgtttggttttgcaaaaaagtaatggaatggaatggtgtgtgatggaactcattccatccaataccactattttaactagttttccattcccct 4292660  T
Q  764 caatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccctac-cttttatatttcatca 842  Q
    ||||||||   | |||||||| |||  || ||||| |||||||||| |||| |||| ||||||  |||||||||||||||    
T  4292659 caatttgg---gtatccaatggaatataacacattaataatacaattacaattttgtccctacttttttatatttcatca 4292583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 29535377 - 29535485
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| |||||||||| |||||||||||||  |||  | ||||| ||||||||| ||| |||| | ||||| |||||||||||| | ||||    
T  29535377 gagttatgatacatagacaatcttaggtgacaatacatctcttggtatccacacaaaaatatg-cacatggccacgtggatcccacacaaacacactttc 29535475  T
Q  375 tctttcatct 384  Q
    ||||||||||    
T  29535476 tctttcatct 29535485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 425
Target Start/End: Complemental strand, 480548 - 480397
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||||||||||| || |||||||||||| |||||| |||||||| |  | |||||||||  |||| || | |||    
T  480548 agagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacacttt 480449  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgta 425  Q
    ||||||  ||| |||||||| |||| |  ||||||| |||||||||| ||||    
T  480448 ctcttttctctcctcttctctcttcctaatgcatggggtgtacaaaggtgta 480397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 11511562 - 11511439
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| || ||||||||||||||||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 11511463  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||  |||||||||||| ||||    
T  11511462 tcttttctcttctcttctctcttc 11511439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 272 - 398
Target Start/End: Complemental strand, 28480371 - 28480245
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    |||||||||| |||||| ||||| |||| |||||||||||    || |||| |||| |||||| ||||| || |  |||||||||||||||||||| | |    
T  28480371 atagagttataatacatagacaaccttaggtgacaatacacttcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacact 28480272  T
Q  372 ttctctttcatcttctcttctcacttc 398  Q
    ||||| ||||||| |||||||| ||||    
T  28480271 ttctccttcatctcctcttctctcttc 28480245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 272 - 398
Target Start/End: Complemental strand, 28481246 - 28481120
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    |||||||||| |||||| ||||| |||| |||||||||||    || |||| |||| |||||| ||||| || |  |||||||||||||||||||| | |    
T  28481246 atagagttataatacatagacaaccttaggtgacaatacacttcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacact 28481147  T
Q  372 ttctctttcatcttctcttctcacttc 398  Q
    ||||| ||||||| |||||||| ||||    
T  28481146 ttctccttcatctcctcttctctcttc 28481120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 272 - 398
Target Start/End: Complemental strand, 28482121 - 28481995
Alignment:
Q  272 atagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatt 371  Q
    |||||||||| |||||| ||||| |||| |||||||||||    || |||| |||| |||||| ||||| || |  |||||||||||||||||||| | |    
T  28482121 atagagttataatacatagacaaccttaggtgacaatacacttcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacact 28482022  T
Q  372 ttctctttcatcttctcttctcacttc 398  Q
    ||||| ||||||| |||||||| ||||    
T  28482021 ttctccttcatctcctcttctctcttc 28481995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 47986206 - 47986331
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    ||||||||||||||||  |||  |||| ||| |||||||||| |||||| ||||| |||||| ||||| ||||| || |||||||| |||||  | | ||    
T  47986206 tagagttatgatacataaacacccttaggtggcaatacatcccttgacatccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactt 47986305  T
Q  373 tctctttcatcttctcttctcacttc 398  Q
    |||||||| | |||||||||| ||||    
T  47986306 tctctttcttattctcttctctcttc 47986331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 19670817 - 19670693
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || ||||||| |||| |||||| ||||| ||||| || |||||||| |||||  | | |||    
T  19670817 agagttatgatacataaacacccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 19670718  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  19670717 ctctttcttcttctcttctctcttc 19670693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 29239885 - 29240068
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| |  |||||| ||||| |||||| | |||||| |  | ||||||||||||||| || | |||    
T  29239885 agagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacacttt 29239984  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    ||||||| ||| |||||||| |||| |  ||||||| ||||||||   |||| | ||||||||||| || |||| |||| ||||    
T  29239985 ctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtctatgtaacattttcc 29240068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 50813996 - 50813869
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    ||||||||||||||||||  ||| ||||| |||  |||||| || |||||||||||| |||||| ||||| ||||  || || ||||| |||||  | |     
T  50813996 aatagagttatgatacataaacactcttaggtggtaatacaccccttgacacccacacaaaaatctgacatgtggtcatatgaaccccgcacaagtacac 50813897  T
Q  371 tttctctttcatcttctcttctcacttc 398  Q
    |||||||||| |||||||||||| ||||    
T  50813896 tttctctttcttcttctcttctctcttc 50813869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 398
Target Start/End: Complemental strand, 17983822 - 17983720
Alignment:
Q  296 cttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcac 395  Q
    |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||||||||| |||||||||||| |    
T  17983822 cttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 17983723  T
Q  396 ttc 398  Q
    |||    
T  17983722 ttc 17983720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 29589810 - 29589717
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    ||||||| || |||||||||||| |||||| ||| | ||||| || ||||||||||||||  | | |||||||||| |||||||||||| ||||    
T  29589810 caatacaccccttgacacccacacaaaaatctgatatgtggccatatggaccccacacaagtacactttctctttcttcttctcttctctcttc 29589717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 29977915 - 29978000
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctctt 390  Q
    ||||||| || || ||||||||| |||||| |||||||| |  || |||||||||||||| || | ||||||||||||||||||||    
T  29977915 caatacaccccttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttctctttcatcttctctt 29978000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 435
Target Start/End: Original strand, 6034044 - 6034204
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| ||||| || |  | ||||| ||| ||||| || | ||||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttc 6034143  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| |||||||||    
T  6034144 tcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 6034204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 29548060 - 29547936
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| |||||||||| |||||||||||| |||||| ||||| ||||| || |||| ||| || ||  | | |||    
T  29548060 agagttatgatacataaacatccttaggtggcaatacatcccttgacacccacacaaaaatctgacatgtggccatatggatcccgcataagtacacttt 29547961  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
     |||||| |||||||||||| ||||    
T  29547960 ttctttcttcttctcttctctcttc 29547936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 41236347 - 41236511
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| |  |||||| ||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 41236446  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| | |||||||||||    
T  41236447 tcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggt 41236511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 824
Target Start/End: Complemental strand, 41810016 - 41809851
Alignment:
Q  665 ttccattgtttggttttgtaaaaaa-ta----aatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcatt 758  Q
    ||||||||||||||||||||||||| ||    ||| ||||||||| || |||||||||||||||||| |   ||||||  |||| | |||| ||| ||||    
T  41810016 ttccattgtttggttttgtaaaaaaatagtggaattgaatggaatggaatgtgatggaacccattccatgatataccactcattcatccaattttccatt 41809917  T
Q  759 ccacccaatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccct 824  Q
    || ||||||||||  || || ||||| |||||||  |||| |||| ||||| |||| |||||||||    
T  41809916 ccccccaatttgggatgtattcaatggaatggaacgcattaataagacaattacaattttgcccct 41809851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Complemental strand, 54473633 - 54473469
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||||||||||| |  |||||||||||| |||||| | |||||| |  | ||||||||| ||||| || | |||     
T  54473633 gagtaatgatacatagacacccttaggtgacaatacaccatttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttta 54473534  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  | |||||||||||||| | |||| | |||||||||||    
T  54473533 tcttttctctcctcttctctcttcctaatacatggagtgtacaagggtgtatgggaataaagggt 54473469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 55475190 - 55475314
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||  || ||  | | |||    
T  55475190 agagttatgatacataaacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtggccatatggaccctgcataagtacacttt 55475289  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  55475290 ctctttcttcttctcttctctcttc 55475314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 608 - 651
Target Start/End: Original strand, 13779289 - 13779332
Alignment:
Q  608 ttggattgatggagagtggtggaatggaatagagtgggatggaa 651  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  13779289 ttggattgatggagagtggtggaatggaatggaatgggatggaa 13779332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 32766957 - 32767076
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  ||| ||||| ||| ||||||| || |||||||||| | |||||| ||||| ||||| || |||||||  |||||  | | |||    
T  32766957 agagttatgatacataaacactcttaggtggcaatacaccccttgacacccatacaaaaatctgacatgtggccatatggaccctgcacaagtacacttt 32767056  T
Q  374 ctctttcatcttctcttctc 393  Q
    ||||||| ||||||| ||||    
T  32767057 ctctttcttcttctcctctc 32767076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 425
Target Start/End: Complemental strand, 48647827 - 48647676
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||| ||||  |||  |||| || |||||||| |  || |||||||||||||||| | ||||||||  | |||||| || ||||| || | |||    
T  48647827 agagttatgacacataaacatccttaggtaacaatacacctcttaacacccacataaaaatctaacacgtggtcacgtggactccgcacaagcacaattt 48647728  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgta 425  Q
    ||||||| ||| |||||||| |||| |  ||||| || ||||||||||||||    
T  48647727 ctctttcctctcctcttctctcttcctagtgcatagaatgtacaaagatgta 48647676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 18769153 - 18769218
Alignment:
Q  319 acacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatct 384  Q
    ||||||||| |||||| ||||||||||  ||||  |||||||||||| | ||||||||||||||||    
T  18769153 acacccacacaaaaatctgacacgtggtcatgtaaaccccacacaaatacattttctctttcatct 18769218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 31910192 - 31910296
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| |||||||||||  | |||||||||||| |||||| |||||| | || |  |||||||| ||||| || | ||||    
T  31910192 gagttatgatacatagacatccttaggtgacaatacactctttgacacccacacaaaaatctgacacatagccacatggaccccgcacaagcacactttc 31910291  T
Q  375 tcttt 379  Q
    |||||    
T  31910292 tcttt 31910296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 55079814 - 55079690
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtgga-ccccacacaaacatatttt 373  Q
    ||||||||||||||  |||  |||| ||| ||||||| |  |||||||||| | |||||| ||||| ||||| || |||| ||||||||||  | | |||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacctcttgacacccatacaaaaatctgacatgtggccatatggacccccacacaagtacacttt 55079715  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  55079714 ctctttcttcttctcttctctcttc 55079690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 437
Target Start/End: Original strand, 23608262 - 23608397
Alignment:
Q  302 tgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtg 401  Q
    |||||||||| |  |||||||||||| |||||| |||||||| |  | ||| || |||||||| || | ||||||||| |||| |||||||| |||| |     
T  23608262 tgacaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtgaactccacacaagcacactttctcttttatctcctcttctctcttccta 23608361  T
Q  402 ttgcatggagtgtacaaagatgtacgagaataaagg 437  Q
     ||||||  |||||||  |||||| | |||||||||    
T  23608362 atgcatgaggtgtacagggatgtatgggaataaagg 23608397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 703
Target Start/End: Complemental strand, 4342147 - 4342109
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaa 703  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  4342147 ttccattgtttggttttgtaaaaaagtaatggaatggaa 4342109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 18769103 - 18769038
Alignment:
Q  319 acacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatct 384  Q
    ||||||||| |||||| ||||| ||||  ||||  | |||||||||||| ||||||||||||||||    
T  18769103 acacccacacaaaaatctgacatgtggtcatgtaaatcccacacaaacacattttctctttcatct 18769038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 44536847 - 44536723
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    ||||||||||||||||  ||| | ||| ||| ||||||| || |||||| ||||| |||||| ||||| ||||  || | ||||||||| ||  | | ||    
T  44536847 tagagttatgatacataaacacttttaggtggcaatacaccc-ttgacatccacacaaaaatctgacatgtggtcatatagaccccacataagtacactt 44536749  T
Q  373 tctctttcatcttctcttctcacttc 398  Q
    |||||||| |||||||||||| ||||    
T  44536748 tctctttcttcttctcttctctcttc 44536723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 600 - 826
Target Start/End: Complemental strand, 44300 - 44076
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||||||||||||||| || |||  ||| |    | |||||| |||||||||||||||||||||||||| ||||||||    
T  44300 ggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggata--gatccata-ttccattgtttggttttgtaaaaaatgaatggaat 44204  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatcca-ttaaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| ||||||||||||||||||||| |||||||||| ||| |||||||| ||| |||||| |||||||||  |||   |||||| |||| || |||||    
T  44203 ggaatggagtgtgatggaacccattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacatt 44104  T
Q  799 gataatacaatcacaactttgcccctac 826  Q
     |||| ||||| ||||| ||| ||||||    
T  44103 aataagacaattacaacattgtccctac 44076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 600 - 826
Target Start/End: Complemental strand, 78021 - 77797
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||||||||||||||| || |||  ||| |    | |||||| |||||||||||||||||||||||||| ||||||||    
T  78021 ggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggata--gatccata-ttccattgtttggttttgtaaaaaatgaatggaat 77925  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatcca-ttaaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| ||||||||||||||||||||| |||||||||| ||| |||||||| ||| |||||| |||||||||  |||   |||||| |||| || |||||    
T  77924 ggaatggagtgtgatggaacccattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacatt 77825  T
Q  799 gataatacaatcacaactttgcccctac 826  Q
     |||| ||||| ||||| ||| ||||||    
T  77824 aataagacaattacaacattgtccctac 77797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 600 - 842
Target Start/End: Original strand, 10354208 - 10354443
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||  |||||| ||| ||        |||||| ||||| ||||||  ||||||||    
T  10354208 ggctatgtttggattgatggagagtggtggaatggaatggagtaggataaaaccatattctat--------tgtttgattttgcaaaaaaggaatggaat 10354299  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccattaa-ccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| ||||| |||| ||| |||||| |||||||||| ||||||| ||||||||||||||| ||||| ||   ||| |||||||| ||||||| ||||     
T  10354300 ggaatggagtgcgatgaaactcattccatccaataccacccattaagccaaattttcattccccccaaattaaggtgtatccaatggaatggaatacata 10354399  T
Q  799 gataatacaatcacaactttgcccctaccttttatatttcatca 842  Q
     |||||||||| |||||| ||||||| |||||| ||||||||||    
T  10354400 aataatacaatgacaactatgcccctgccttttctatttcatca 10354443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 665 - 792
Target Start/End: Original strand, 28219028 - 28219156
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacc 763  Q
    |||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||| ||||||||||  ||||    ||| |||||||||||||    
T  28219028 ttccattgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaatttttcattccacc 28219127  T
Q  764 caatttggagtgaatccaatgaaatggaa 792  Q
    |||||||| ||| |||||||| |||||||    
T  28219128 caatttggggtgtatccaatggaatggaa 28219156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 17820104 - 17819960
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| |||||   || ||| ||||||| || |||||||||||| |||||| ||||| |||| || |||||||||||||||||| ||||||    
T  17820104 gagttatgatacatagacaactataggtggcaatacaccccttgacacccacacaaaaatctgacatgtggttacgtggaccccacacaaacacattttc 17820005  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaa 419  Q
    |||||||||| |||||||| |||| |  ||||||  |||||||||    
T  17820004 tctttcatctcctcttctctcttcctaatgcatgaggtgtacaaa 17819960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 600 - 737
Target Start/End: Complemental strand, 7444858 - 7444724
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||| ||||||||||||||||||||| ||||||||||| || |||  ||| |  || | ||| | ||||||||||||||||| |||||||| ||||||||    
T  7444858 ggctttgtttggattgatggagagtgatggaatggaatggaatggagtgggat-atat-ccaca-ttccattgtttggttttctaaaaaatgaatggaat 7444762  T
Q  700 ggaatagagtgtgatggaacccattccttccaatacca 737  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  7444761 ggaatggagtgtgatggaacccattccatccaatacca 7444724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 13438343 - 13438507
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| |||||||||||||| |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  13438343 gagtaatgatacatagacacccttaggtgacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 13438442  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| |||||| | |||||||||||    
T  13438443 tcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggt 13438507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 38732354 - 38732477
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  ||||||||||||||||||| |||||||||||| |||||| ||||| ||||  || |||||||| |||||  | | ||||    
T  38732354 gagttatgatacataaacacccttatgtgacaatacatcccttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttc 38732453  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  38732454 tctttcttcttctcttctctcttc 38732477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 669 - 824
Target Start/End: Complemental strand, 1499338 - 1499181
Alignment:
Q  669 attgtttggttttgta-aaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaa 766  Q
    |||||||| ||||||| ||||| ||||||||||||||  ||||||||||||  |||||| ||||||||||  |||| |||||| |||| ||| | |||||    
T  1499338 attgtttgcttttgtataaaaaaaaatggaatggaatgcagtgtgatggaattcattccatccaataccaatcattcaaccaattttttatttcccccaa 1499239  T
Q  767 tttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccct 824  Q
    ||||  ||| |||||||| |||||||  |||| |||||||||| |||| |||| ||||    
T  1499238 tttgaggtgtatccaatggaatggaatgcatttataatacaattacaattttgtccct 1499181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 274 - 441
Target Start/End: Original strand, 9058479 - 9058646
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  ||||||||||| ||||| || | |||    
T  9058479 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 9058578  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtat 441  Q
    ||||||  ||| |||||||| |||| |  ||||||| ||||||||   |||| | |||||||||||||    
T  9058579 ctcttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagggtat 9058646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 273 - 439
Target Start/End: Original strand, 36168834 - 36169000
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||||||||||||| ||||  ||||  ||||||||||||| || || |||||| |||||| ||||||||||| |  |||||||| ||||| |||| ||    
T  36168834 tagagttatgatacatagacatccttagatgacaatacatcctttaactcccacacaaaaatttgacacgtggccacatggaccccgcacaagcatactt 36168933  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||||  ||| || ||||| |||| |  || |||| ||||||||   |||| |||||||||||||    
T  36168934 tctcttttctctcctattctctcttcctaatgtatggggtgtacaagagtgtatgagaataaagggt 36169000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 10249483 - 10249318
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||||||||||| |  |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||    
T  10249483 agagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 10249384  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| ||||| || |||| |  ||||||| |||||||| | |||| |||||||||||||    
T  10249383 ctcttttctctcctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggt 10249318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 666 - 798
Target Start/End: Original strand, 44246347 - 44246475
Alignment:
Q  666 tccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccaccc 764  Q
    ||||||||||||||||||| ||||     |||||||||| |||||||||||||| |||||| ||||||||||  ||||    ||| ||||||||||| ||    
T  44246347 tccattgtttggttttgtataaaa-----ggaatggaatggagtgtgatggaactcattccatccaataccactcattctttcaatttttcattccatcc 44246441  T
Q  765 aatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||||| ||| |||||||| ||||||| |||||    
T  44246442 aatttggggtgtatccaatggaatggaacacatt 44246475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 28863451 - 28863619
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    |||||| | ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || |     
T  28863451 aatagaataatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacac 28863550  T
Q  371 tttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||||| |||| |||||||| |||| |  ||||||  |||||||| | |||| | |||||||||||    
T  28863551 tttctcttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggt 28863619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 45097836 - 45097712
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| |||||||||| |||||||||| | |||||| ||||| ||||| || |||||||| |||||  | | |||    
T  45097836 agagttatgatacataaacatccttaggtggcaatacatcccttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 45097737  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  45097736 ctctttcttcttctcttctctcttc 45097712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 20700814 - 20700997
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||||||| ||||||| || ||||| || ||| |||||| |||||||| |  | ||||||||| || || || | |||    
T  20700814 agagtaatgatacatagacatccttatgtggcaatacaccctttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagcacacttt 20700913  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    ||||||| ||| |||||||| |||| |  ||||||| |||||||| | |||| | ||||||||||| || |||| |||| ||||    
T  20700914 ctctttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcc 20700997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 436
Target Start/End: Complemental strand, 32505750 - 32505587
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||| ||||||||| ||||  |||| ||||||||||| |  |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||    
T  32505750 tagagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 32505651  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaag 436  Q
    ||| |||  ||| |||||||| |||| |  ||||||| |||||||| | |||| ||||||||||    
T  32505650 tctattttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaag 32505587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 43490121 - 43490244
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||||||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||     
T  43490121 gagttatgatacataaacacccttaggtgacaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttta 43490220  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  43490221 tctttcttcttctcttctctcttc 43490244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 273 - 439
Target Start/End: Complemental strand, 7465837 - 7465671
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||| ||||||||| ||||  ||||  || ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||||||||| || | ||    
T  7465837 tagagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactt 7465738  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||| ||||  ||||||| |||| |  ||||||  |||||||| | |||| | |||||||||||    
T  7465737 tctcttttatctcttcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggt 7465671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 275 - 457
Target Start/End: Complemental strand, 40614002 - 40613820
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||||||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| ||||||||||| |  |||||||| ||||| || | ||||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacactttc 40613903  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    |||||  ||| || ||||  |||| |  || |||| |||||||| | |||| | ||||||||||| || |||| |||| ||||    
T  40613902 tcttttctctcctattctttcttcataatgtatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcc 40613820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 42257192 - 42257310
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||   ||| ||| |||||||||  ||||||||||||||||||| ||||||||||| |  |||||||| ||||| || | |||    
T  42257192 agagttatgatacatagacatctttaggtggcaatacatcatttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagcacacttt 42257291  T
Q  374 ctctttcatcttctcttct 392  Q
    ||||||  ||| |||||||    
T  42257292 ctcttttctctcctcttct 42257310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 15428841 - 15428725
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||||||| | ||||| || || |||| |||| |||||| ||||| ||||| ||||  ||||||| |||||| |||||    
T  15428841 agagttatgatacataaacatccttatgtggccatacaccccttaacactcacacaaaaatctgacatgtggccatgtaaaccccacgcaaacacatttt 15428742  T
Q  374 ctctttcatcttctctt 390  Q
    ||||||||||| |||||    
T  15428741 ctctttcatctcctctt 15428725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 601 - 803
Target Start/End: Complemental strand, 28199393 - 28199194
Alignment:
Q  601 gctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatg 700  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||    ||  || | |||||||||||||||||| ||||    ||||||||     
T  28199393 gctatgtttggattgatg-agagtggtggaatggaatggaatgggatggaatagagt--caga-ttccattgtttggttttggaaaattgtaatggaatc 28199298  T
Q  701 gaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattg 799  Q
    |||| || |||||||||||  ||||| ||||||||||  |||| |  ||| ||| |||||| ||||| |||| ||| ||||||||  |||||| |||||     
T  28199297 gaatggaatgtgatggaacttattccatccaataccactcattcattcaattttccattcctcccaaattggggtgtatccaatgggatggaacacatta 28199198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 696 - 814
Target Start/End: Complemental strand, 18000035 - 17999917
Alignment:
Q  696 gaatggaatagagtgtgatggaacccattccttccaataccatccattaa-ccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaa 794  Q
    ||||||||| ||||||||||||| ||||||  ||||||||||  |||||| ||||||||||| |||  ||||||||| ||| |||| ||| ||||||| |    
T  18000035 gaatggaatggagtgtgatggaatccattctatccaataccactcattaagccaaattttca-tccctccaatttggggtgtatccgatggaatggaata 17999937  T
Q  795 cattgataatacaatcacaa 814  Q
    |||| |||| ||||| ||||    
T  17999936 cattaataaaacaatgacaa 17999917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 280 - 435
Target Start/End: Complemental strand, 19930915 - 19930760
Alignment:
Q  280 atgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    ||||||||| ||||  |||| ||| ||||||| || |||||| ||||| |||||| |||||||| |  ||||||||||| |||||||| | |||||||||    
T  19930915 atgatacatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctcttt 19930816  T
Q  380 catcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
      ||| |||||||| |||| |  ||||||  |||||||| | |||| | |||||||    
T  19930815 tctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaa 19930760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 398
Target Start/End: Complemental strand, 2997566 - 2997464
Alignment:
Q  296 cttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcac 395  Q
    |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||||||||| |||||||||||| |    
T  2997566 cttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 2997467  T
Q  396 ttc 398  Q
    |||    
T  2997466 ttc 2997464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 5574590 - 5574520
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgt 343  Q
    |||||| ||||||||| |||| ||||| ||| ||||||| || ||||||||||||||||||| ||||||||    
T  5574590 tagagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgt 5574520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 600 - 637
Target Start/End: Original strand, 6476769 - 6476806
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaat 637  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6476769 ggctatgtttggattgatggagagtggtggaatggaat 6476806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 435
Target Start/End: Complemental strand, 33436201 - 33436040
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| | |||||| |  | ||||||||| ||||| || | |||    
T  33436201 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttt 33436102  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||||| |||  ||||||| |||| |  ||||||  |||||||| | |||| |||||||||    
T  33436101 ctctttcctctcatcttctctcttcctaatgcatgaggtgtacaagggtgtatgagaataaa 33436040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 26891605 - 26891481
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| | ||  |||| ||| ||||||| || | |||||||||| |||||| ||||| ||||  | ||||||| |  |||| || |||||    
T  26891605 agagttatgatacatagccacccttaggtggcaatacacccctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacatttt 26891506  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  26891505 ctctttcctcttctcttctctcttc 26891481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 439
Target Start/End: Original strand, 2533122 - 2533287
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||||||||||||| ||||  |||| ||| |||||||||| |||||| ||||| |||||| |||||||| || |  | |||||| ||||| || | ||    
T  2533122 tagagttatgatacatagacatccttaagtggcaatacatcctttgaca-ccacacaaaaatctgacacgtagccacatagaccccgcacaagcacactt 2533220  T
Q  373 tctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    | ||||| |||| |||||||| ||||    || |||| |||||||| | |||| | |||||||||||    
T  2533221 tttcttttatctcctcttctctcttcccaatgtatggggtgtacaagggtgtatgggaataaagggt 2533287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 435
Target Start/End: Complemental strand, 38273243 - 38273083
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| |||| |||||  || ||||||| || || ||||||||| |||||| |||||||| || |  |||||||| ||| | || | |||    
T  38273243 agagttatgatacatagacattcttagatggcaatacaccctttaacacccacacaaaaatctgacacgtagccacatggaccccgcactagcacacttt 38273144  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||||||  ||| || ||||| |||| |  || |||| |||||| |||||||| |||||||||    
T  38273143 ctcttttctctcctattctctcttcctaatgtatggggtgtac-aagatgtatgagaataaa 38273083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 17473020 - 17473184
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  ||||  || ||||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | ||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 17473119  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||  |||||||| | |||| | |||||||||||    
T  17473120 tcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggt 17473184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 33436207 - 33436291
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggac 355  Q
    |||||||| ||||||||| ||||  ||||  || ||||||| |  ||||||||||||||||||| ||||||||| | ||||||||    
T  33436207 aatagagtaatgatacatagacatccttagatggcaatacaccttttgacacccacataaaaatctgacacgtgaccatgtggac 33436291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 40701478 - 40701582
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| |||||||| | || ||||||||| ||||| || | ||||    
T  40701478 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttc 40701577  T
Q  375 tcttt 379  Q
    |||||    
T  40701578 tcttt 40701582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 637
Target Start/End: Complemental strand, 18000115 - 18000080
Alignment:
Q  602 ctatgtttggattgatggagagtggtggaatggaat 637  Q
    |||||||||||||||||||||||| |||||||||||    
T  18000115 ctatgtttggattgatggagagtgatggaatggaat 18000080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 637
Target Start/End: Original strand, 44246301 - 44246336
Alignment:
Q  602 ctatgtttggattgatggagagtggtggaatggaat 637  Q
    |||||||||||||||||||||||| |||||||||||    
T  44246301 ctatgtttggattgatggagagtgatggaatggaat 44246336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 3737986 - 3738060
Alignment:
Q  318 gacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttct 392  Q
    |||||||||| |||||| ||||| ||||  ||||||||||| ||||| || ||||||| |||| ||| |||||||    
T  3737986 gacacccacacaaaaatctgacatgtggtcatgtggaccccgcacaagcacattttctttttcctctcctcttct 3738060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 13365394 - 13365476
Alignment:
Q  316 ttgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    |||||||||||| |||||| ||||| ||| | || |||||||| |||||  | | |||||||||| |||||||||||| ||||    
T  13365394 ttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttctctttcttcttctcttctctcttc 13365476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 30915462 - 30915531
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgt 343  Q
    ||||| ||||||||| ||||  |||| ||| ||||||| || ||||| ||||||||||||| ||||||||    
T  30915462 agagtaatgatacatagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacacgt 30915531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 627 - 824
Target Start/End: Complemental strand, 30287 - 30097
Alignment:
Q  627 tggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattcc 726  Q
    ||||||||||| |||||||||||| |||||||||||        |||||||||||||||||||  ||||||||||||| || ||||||||||||||||||    
T  30287 tggaatggaatggagtgggatggagccatgttccat--------tgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattcc 30196  T
Q  727 ttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacattgataatacaatcacaactttgcccct 824  Q
     ||  ||||||  |||| | |||| ||| |||||| |||||||||| ||| |||||||||||||||| ||||| |||| ||||| |||| |||||||||    
T  30195 atcatataccactcattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaacacattaataagacaattacaattttgcccct 30097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 600 - 852
Target Start/End: Original strand, 38679689 - 38679938
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||  ||  |  |  |  |||  |||||||||||||||||||||||||| ||| ||||    
T  38679689 ggctatgtttggattgatggagagtgatggaatggaatggagtggagtgagataaaat--catg-ttccattgtttggttttgtaaaaaatgaatagaat 38679785  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccattaa-ccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| |||||||||||||| |||||| | |||||| |  |||||| ||||||||||||||| || ||||||| ||| |||||||  ||||||| |||||    
T  38679786 ggaatggagtgtgatggaactcattccattcaatactactcattaagccaaattttcattcc-ccaaatttggggtgtatccaattgaatggaatacatt 38679884  T
Q  799 gataatacaatcacaactttgcccctaccttttatatttcatcatctgctcctc 852  Q
     ||| |||||| |||||||| |||     |||| |||||||||| |||||||||    
T  38679885 aatagtacaatgacaactttaccctatttttttctatttcatcaactgctcctc 38679938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 600 - 737
Target Start/End: Complemental strand, 42025526 - 42025397
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||||  |       |||||| |||||||||||||||||||||||||| ||||||||    
T  42025526 ggctttgtttggattgatggagagtgatggaatggaatggagtgggatata-------tccata-ttccattgtttggttttgtaaaaaatgaatggaat 42025435  T
Q  700 ggaatagagtgtgatggaacccattccttccaatacca 737  Q
     |||| ||||||||||||||||||||| ||||||||||    
T  42025434 tgaatggagtgtgatggaacccattccatccaatacca 42025397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 16056502 - 16056378
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  ||||||||||||||||||| |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||    
T  16056502 agagttatgatacataaacatccttatgtgacaatacatcccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 16056403  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  16056402 ctctttcttcttctcttctctcttc 16056378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 601 - 732
Target Start/End: Complemental strand, 34924922 - 34924794
Alignment:
Q  601 gctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaatg 700  Q
    ||||||||||||||||||||||||| ||||||||||| || |||  ||| |  || | ||| | | ||||||||||||| |||||||||| |||||||||    
T  34924922 gctatgtttggattgatggagagtgatggaatggaatggaatggagtgggat-atat-ccaca-tcccattgtttggttatgtaaaaaatgaatggaatg 34924826  T
Q  701 gaatagagtgtgatggaacccattccttccaa 732  Q
    |||| ||||||||||||||||||||| |||||    
T  34924825 gaatggagtgtgatggaacccattccatccaa 34924794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 600 - 737
Target Start/End: Complemental strand, 14112520 - 14112385
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggtttt-gtaaaaaataaatggaa 698  Q
    |||||||||||||||||||||||||| ||||||||||| || |||  ||| |  || | ||| | | ||||||||||||| | ||||||||| |||||||    
T  14112520 ggctatgtttggattgatggagagtgatggaatggaatggaatggagtgggat-atat-ccaca-tcccattgtttggttatagtaaaaaatgaatggaa 14112424  T
Q  699 tggaatagagtgtgatggaacccattccttccaatacca 737  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  14112423 tggaatagagtgtgatggaaccgattccatccaatacca 14112385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 17443823 - 17443948
Alignment:
Q  273 tagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattt 372  Q
    |||||||||||||||| ||||| |||| |||||||||||    || |||| |||| |||||| ||||| || |  |||||||||||||||||| | | ||    
T  17443823 tagagttatgatacatagacaaccttaggtgacaatacacttcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaagacactt 17443922  T
Q  373 tctctttcatcttctcttctcacttc 398  Q
    ||||||||||||||||||||| ||||    
T  17443923 tctctttcatcttctcttctctcttc 17443948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 435
Target Start/End: Original strand, 12831047 - 12831207
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||||||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 12831146  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| |||||||||    
T  12831147 tcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 12831207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 280 - 439
Target Start/End: Original strand, 5957835 - 5957994
Alignment:
Q  280 atgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    ||||||||| |||| ||||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | |||||||||    
T  5957835 atgatacatagacattcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttctcttt 5957934  T
Q  380 catcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    | ||| |||||||| |||| |  ||||||  |||||||| | |||| |||||||||||||    
T  5957935 cctctcctcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaagggt 5957994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 458
Target Start/End: Complemental strand, 10284732 - 10284548
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| ||||  |||| |||||||||||  | |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||    
T  10284732 agagttatgatacatagacacccttaagtgacaatacactctttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacacttt 10284633  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttccc 458  Q
    ||||||| | |  ||||||| |||| |  ||||||| |||||||| | ||||  |||||||| ||| || |||| |||| |||||    
T  10284632 ctctttcctttcatcttctctcttcctagtgcatggggtgtacaaggttgtataagaataaaaggtgtctatgtaacattttccc 10284548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 16383376 - 16383500
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||    
T  16383376 agagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 16383475  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  16383476 ctctttcttcttctcttctctcttc 16383500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 24307894 - 24307770
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| |||||||||| |||||||||||| |||||| ||| | ||||| || |||||||| |||||  | | |||    
T  24307894 agagttatgatacataaacacccttaggtggcaatacatcccttgacacccacacaaaaatctgatatgtggccatatggaccccgcacaagtacacttt 24307795  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  24307794 ctctttcttcttctcttctctcttc 24307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 439
Target Start/End: Complemental strand, 34012396 - 34012232
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| |||  |||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || | ||||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttc 34012297  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| | ||||||||||||||||||    
T  34012296 tcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggt 34012232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 30479574 - 30479451
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||| ||||||| || |||||| |||||||||||| ||||| |||||||| |||||| | |||||  | | ||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccctttgacatccacataaaaatctgacatgtggctatatggacctcgcacaagtacactttc 30479475  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  30479474 tctttcttcttctcttctctcttc 30479451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 743
Target Start/End: Original strand, 30800196 - 30800270
Alignment:
Q  669 attgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaataccatccatt 743  Q
    ||||||| |||||||||||||  | ||||||| |||||||||||||||||| |||||| ||||||||||| ||||    
T  30800196 attgtttagttttgtaaaaaaggagtggaatgaaatagagtgtgatggaactcattccatccaataccattcatt 30800270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 439
Target Start/End: Original strand, 14547929 - 14548086
Alignment:
Q  282 gatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttca 381  Q
    ||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||||||||      
T  14547929 gatacatagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttc 14548028  T
Q  382 tcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||| |||||||| |||| |  ||||||| |||||||| |||||| | |||||||||||    
T  14548029 tctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggt 14548086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 15259030 - 15258906
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||||||||||||| || | |||||  || |||||||||| | |||| |||||||||||| ||||| ||||  | ||||||||  ||||| || |||||    
T  15259030 agagttatgatacatagatactcttagatggcaatacatccctggacatccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacatttt 15258931  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| ||| |||||||| ||||    
T  15258930 ctctttcctctcctcttctctcttc 15258906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 669 - 737
Target Start/End: Complemental strand, 28873829 - 28873761
Alignment:
Q  669 attgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    |||||||||||||||||||||  |||| |||||||| | ||||||||||||| ||||| ||||||||||    
T  28873829 attgtttggttttgtaaaaaaggaatgaaatggaatggtgtgtgatggaacctattccatccaatacca 28873761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Complemental strand, 504221 - 504057
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || |  |||    
T  504221 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacattc 504122  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  |||  ||||||| |||| |  ||||||| |||||||| | |||| |||||||||||||    
T  504121 tcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggt 504057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 15197333 - 15197437
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| |||| ||||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 15197432  T
Q  375 tcttt 379  Q
    |||||    
T  15197433 tcttt 15197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Complemental strand, 23122697 - 23122533
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| ||||||| |  |||||||||||| |||||| |||||||| |  | ||||||||| || || || | ||||    
T  23122697 gagtaatgatacatagacacccttaagtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttc 23122598  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    |||||  ||| || ||||| |||| |  ||||||| |||||||| | |||| |||||||||||||    
T  23122597 tcttttctctcctgttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggt 23122533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 34307215 - 34307339
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||  || || ||||| |||||  | | |||    
T  34307215 agagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggacatatgaaccccgcacaagtacacttt 34307314  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  34307315 ctctttcttcttctcttctctcttc 34307339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 271 - 418
Target Start/End: Original strand, 37038475 - 37038622
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    |||||||| ||||||||| ||||   ||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || |     
T  37038475 aatagagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacac 37038574  T
Q  371 tttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaa 418  Q
    ||||| |||| ||| |||||||| |||| |  ||||||| ||||||||    
T  37038575 tttctatttcctctcctcttctctcttcctagtgcatggggtgtacaa 37038622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 437
Target Start/End: Complemental strand, 1180040 - 1179878
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| |||  |||||| || |||||||||||| |||||| |||||||| |  |||||||  || ||||| || | ||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactttc 1179941  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagg 437  Q
    |||||  ||| |||||||| |||| |  ||||||| |||||||| ||| || | |||||||||    
T  1179940 tcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatatatgggaataaagg 1179878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 24307628 - 24307710
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggacc 356  Q
    |||||||||||||||  |||  |||| ||| ||||||||||||||||||||||| |||||| ||| | ||||| || ||||||    
T  24307628 agagttatgatacataaacacccttaggtggcaatacatccattgacacccacacaaaaatctgatatgtggccatatggacc 24307710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 457
Target Start/End: Complemental strand, 42354636 - 42354506
Alignment:
Q  327 ataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtac 426  Q
    |||||||| |||||||||   ||||||| | |||| || || | ||||||||||||||||||||||| |||| |  ||||||| ||||| || | ||||     
T  42354636 ataaaaatctgacacgtgttcatgtggatctcacataagcacactttctctttcatcttctcttctctcttcctagtgcatggggtgtagaagggtgtat 42354537  T
Q  427 gagaataaagggtatccatgtgacatcttcc 457  Q
    ||||||||| ||| || |||| |||| ||||    
T  42354536 gagaataaatggtgtctatgtaacattttcc 42354506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 42221514 - 42221638
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| |||||||||  |||  |||| |||||||||||| | | |||||||||| |||||| ||||||||    || ||||||||| |||| || | |||    
T  42221514 agagtaatgatacatatacatccttaggtgacaatacattcctggacacccacacaaaaatctgacacgtaatcatatggaccccatacaagcacacttt 42221613  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    |||||||||||  ||||||| ||||    
T  42221614 ctctttcatctcatcttctctcttc 42221638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 32032721 - 32032847
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    ||||||||||||||||||  |||  |||| ||| |||||||||| |||||| ||||| |||||| ||||| ||||| || |||| ||  |||||  | |     
T  32032721 aatagagttatgatacataaacacccttaggtggcaatacatcc-ttgacatccacacaaaaatctgacatgtggccatatggatcctgcacaagtacac 32032819  T
Q  371 tttctctttcatcttctcttctcacttc 398  Q
    ||||||||||  ||||||||||| ||||    
T  32032820 tttctctttctccttctcttctctcttc 32032847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 40424043 - 40423920
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| || |  |||| ||| ||||||| || |||||| ||||| |||||| |||||||| |  ||||||||||| ||||| || | ||||    
T  40424043 gagtaatgatacatagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 40423944  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||  ||| |||||||| ||||    
T  40423943 tcttttctctcctcttctctcttc 40423920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 20075034 - 20074964
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtgg 345  Q
    |||| ||||||||| ||||  |||| ||| |||||||  | ||||||||||||||||||| ||||||||||    
T  20075034 gagtaatgatacatagacatccttaggtggcaatacactctttgacacccacataaaaatgtgacacgtgg 20074964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 457
Target Start/End: Complemental strand, 8841491 - 8841350
Alignment:
Q  316 ttgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttcgtgttgcatggagtgta 415  Q
    |||||||||||| |||||| | |||||| |  | ||||||||| ||||| || | |||||||||| ||| ||||||||  ||| |  ||||||| |||||    
T  8841491 ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttctcttttcctagtgcatggggtgta 8841392  T
Q  416 caaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    |||   |||| ||||||||| ||| || |||| |||| ||||    
T  8841391 caagagtgtatgagaataaatggtgtctatgtaacattttcc 8841350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 275 - 457
Target Start/End: Complemental strand, 31953130 - 31952948
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| |||||| || ||||  |||| ||| ||||||| || ||||||||||||||||||| ||||| |||   ||||||||| |||||||||| | ||||    
T  31953130 gagtaatgatagatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacacactttc 31953031  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    ||||||||||||||||||| |||| |  ||||||| ||||| || |||||| ||||||||| ||| || |||| |||| ||||    
T  31953030 tctttcatcttctcttctctcttcctagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 31952948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 9379808 - 9379697
Alignment:
Q  279 tatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctt 378  Q
    |||||||||| ||||  ||||  ||||||||||||| |||||||||| | |||||| ||||||||||| ||||||| | |||||||||| ||||||||||    
T  9379808 tatgatacatagacatccttagatgacaatacatcccttgacacccatacaaaaatttgacacgtggccatgtggatctcacacaaacacattttctctt 9379709  T
Q  379 tcatcttctctt 390  Q
    ||||||||||||    
T  9379708 tcatcttctctt 9379697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 12732481 - 12732600
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| |||| ||||| ||| ||||| |  |||||||||||||| |||||| ||||||||||||||||||| |||||| || || |||||    
T  12732481 agagtaatgatacatagacattcttaagtggcaatataatcattgacacccacacaaaaatctgacacgtggctatgtggatcccacataagcacatttt 12732580  T
Q  374 ctctttcatcttctcttctc 393  Q
    ||||||||||| ||||||||    
T  12732581 ctctttcatctcctcttctc 12732600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 272 - 439
Target Start/End: Original strand, 11427613 - 11427782
Alignment:
Q  272 atagagttatgatacattgacaa--tcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacata 369  Q
    ||||||| ||||||||| ||||   ||||| ||| |||||||||| |||||||||||| |||||| |||||||| |  | ||||| ||| ||||| || |    
T  11427613 atagagtaatgatacatagacaccctcttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 11427712  T
Q  370 ttttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
     |||||||||  ||| |||||||| |||| |  ||||||| |||||||| | |||| |||||||||||||    
T  11427713 ctttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggt 11427782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 282 - 439
Target Start/End: Original strand, 32869685 - 32869842
Alignment:
Q  282 gatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttca 381  Q
    ||||||| ||||  |||| ||| ||||||| || |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | |||||||||      
T  32869685 gatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttc 32869784  T
Q  382 tcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||| |||||||| |||| |  ||||||| |||||||| |||||| | |||||||||||    
T  32869785 tctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggt 32869842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 15990143 - 15990019
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||    
T  15990143 agagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 15990044  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  15990043 ctctttcttcttctcttctctcttc 15990019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 30341461 - 30341337
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    |||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | |||    
T  30341461 agagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 30341362  T
Q  374 ctctttcatcttctcttctcacttc 398  Q
    ||||||| |||||||||||| ||||    
T  30341361 ctctttcttcttctcttctctcttc 30341337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Complemental strand, 15508124 - 15508001
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    ||||||||||||||  |||  |||| ||| ||||||| || |||||||||||| |||||| ||||| ||||| || |||||||| |||||  | | ||||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 15508025  T
Q  375 tctttcatcttctcttctcacttc 398  Q
    |||||| |||||||||||| ||||    
T  15508024 tctttcttcttctcttctctcttc 15508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 296 - 435
Target Start/End: Complemental strand, 28536565 - 28536428
Alignment:
Q  296 cttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcac 395  Q
    |||| ||| ||||||| || |||||||||||| |||||| |||||||  |  ||||||||||||||||| || | ||||||||| ||||||||||| | |    
T  28536565 cttaggtggcaatacaacccttgacacccacacaaaaatctgacacg--gtcatgtggaccccacacaagcacactttctcttttatcttctcttccctc 28536468  T
Q  396 ttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
    ||| |  ||||||| |||||||| | |||| || ||||||    
T  28536467 ttcctactgcatggggtgtacaagggtgtatgaaaataaa 28536428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 418
Target Start/End: Original strand, 17598554 - 17598697
Alignment:
Q  275 gagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttc 374  Q
    |||| ||||||||| ||||  |||| ||| |||||||||  |||||||||||| |||||| |||||||| |  | ||||||||| ||||| || | ||||    
T  17598554 gagtaatgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacactttc 17598653  T
Q  375 tctttcatcttctcttctcacttcgtgttgcatggagtgtacaa 418  Q
    |||||  ||| |||||||| |||| |  ||||||| ||||||||    
T  17598654 tcttttctctcctcttctctcttcctaatgcatggggtgtacaa 17598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 271 - 457
Target Start/End: Original strand, 31976244 - 31976430
Alignment:
Q  271 aatagagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatat 370  Q
    |||||||||||||||||| ||||  |||| ||| ||||| | || || ||||||||| |||||| ||||||||||  |  || ||||| ||||| || |     
T  31976244 aatagagttatgatacatagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcacac 31976343  T
Q  371 tttctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgtgacatcttcc 457  Q
    |||||||||  ||| |||||||| |||| |  || |||| |||||||| | |||| ||||||||| ||| || |||| |||| ||||    
T  31976344 tttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 31976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 4231578 - 4231671
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctcacttc 398  Q
    ||||||| || ||| |||||||| |||||| ||||||||||| || |||||||| |||||  | | |||||||||| |||||||||||| ||||    
T  4231578 caatacaccccttgccacccacacaaaaatctgacacgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctcttc 4231671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 23128205 - 23128123
Alignment:
Q  297 ttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    |||||||| ||||||||| |||||||||||| |||||| |||||||| |  | ||||| ||||||||| || | |||||||||    
T  23128205 ttatgtgataatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttt 23128123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 33870203 - 33870249
Alignment:
Q  518 gtggcatttgagaatatggtgaaaaagtggccacaattagaaattga 564  Q
    |||||||||||||| |||||||||||||||| |||||||||| ||||    
T  33870203 gtggcatttgagaaaatggtgaaaaagtggcgacaattagaagttga 33870249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 435
Target Start/End: Complemental strand, 22880753 - 22880598
Alignment:
Q  280 atgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctcttt 379  Q
    ||||||||| ||||  |||| ||| ||||||| || |||||||||||| |||| | |||||||| |  | ||||||||| ||||| || | |||||||||    
T  22880753 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 22880654  T
Q  380 catcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaa 435  Q
      ||| |||||||| |||| |  | ||||| |||||||| | |||| | |||||||    
T  22880653 tctctcctcttctctcttcctaatacatggggtgtacaagggtgtatgggaataaa 22880598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 447
Target Start/End: Complemental strand, 6209566 - 6209394
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||  |||| ||| |||||||    ||||||| |||| |||||| || ||||| |  | ||||||||| ||| | || | |||    
T  6209566 agagtaatgatacatagacacccttaggtggcaatacactatttgacactcacacaaaaatctgtcacgtagtcacgtggaccccgcactagcacacttt 6209467  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggtatccatgt 447  Q
    ||||||  ||| |||||||| |||| |  |||||||  |||||||||||||| | |||||||||||||| ||||    
T  6209466 ctcttttctctcctcttctctcttcctaatgcatgggatgtacaaagatgta-gggaataaagggtatctatgt 6209394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 439
Target Start/End: Original strand, 15832576 - 15832741
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatatttt 373  Q
    ||||| ||||||||| ||||   ||| ||||||||| |||  |||||||||||| |||||| |||||||| |  | ||||| ||  |||||| | |||||    
T  15832576 agagtaatgatacatagacacctttaggtgacaataaatcatttgacacccacacaaaaatttgacacgtagtcacgtggatcctgcacaaatacatttt 15832675  T
Q  374 ctctttcatcttctcttctcacttcgtgttgcatggagtgtacaaagatgtacgagaataaagggt 439  Q
    ||||||  ||| |||||||  |||| |  ||||||| |||||||| | ||||   |||||||||||    
T  15832676 ctcttttttctcctcttctatcttcctaatgcatggggtgtacaagggtgtattggaataaagggt 15832741  T

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Target: scaffold0110 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 600 - 804
Target Start/End: Complemental strand, 38739 - 38552
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccatacttccattgtttggttttgtaaaaaataaatggaat 699  Q
    |||||||||| ||||||||||||||| |||||||||     ||||||||||||||||||||||        |||||||||||||||||||     |||||    
T  38739 ggctatgttttgattgatggagagtgatggaatgga-----gtgggatggaaccatgttccat--------tgtttggttttgtaaaaaa-----ggaat 38658  T
Q  700 ggaatagagtgtgatggaacccattccttccaataccatccatt-aaccaaattttcattccacccaatttggagtgaatccaatgaaatggaaaacatt 798  Q
    ||||| ||||||||||||||||||||| ||||||||||  ||||   |||| |||||||||||  ||||||||  || |||||||| ||||||| |||||    
T  38657 ggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccattcaatttgggatgtatccaatggaatggaacacatt 38558  T

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Target: scaffold0039 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 667 - 737
Target Start/End: Original strand, 56928 - 56998
Alignment:
Q  667 ccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  56928 ccattgtttggttatgtaaaaaatgaatggaatggaatagagtgtgatggaaccaattccatccaatacca 56998  T

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Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 637
Target Start/End: Original strand, 56864 - 56901
Alignment:
Q  600 ggctatgtttggattgatggagagtggtggaatggaat 637  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  56864 ggctatgtttggattgatggagagtgatggaagggaat 56901  T

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Target: scaffold0224 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 665 - 737
Target Start/End: Complemental strand, 12545 - 12470
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaat---ggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    ||||||||||||||||||||||||| ||||   |||||||||| ||||||||||||||||||||| ||||||||||    
T  12545 ttccattgtttggttttgtaaaaaaaaaataatggaatggaatggagtgtgatggaacccattccatccaatacca 12470  T

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Target: scaffold0227 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 665 - 737
Target Start/End: Complemental strand, 310 - 238
Alignment:
Q  665 ttccattgtttggttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacca 737  Q
    ||||||||||||||||||||||||    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  310 ttccattgtttggttttgtaaaaatgggatggaatggaatggagtgtgatggaacccattccatccaatacca 238  T

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Target: scaffold0321 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 10210 - 10141
Alignment:
Q  274 agagttatgatacattgacaatcttatgtgacaatacatccattgacacccacataaaaatatgacacgt 343  Q
    ||||||||||||||| ||||   ||| ||| |||||||||| |||||| |||||||||||| ||||||||    
T  10210 agagttatgatacatagacacctttaggtggcaatacatcctttgacatccacataaaaatctgacacgt 10141  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 152528 - 152616
Alignment:
Q  305 caatacatccattgacacccacataaaaatatgacacgtggctatgtggaccccacacaaacatattttctctttcatcttctcttctc 393  Q
    ||||||| || |||||||||||| |||||| ||||| ||||  || |||| ||| |||||| | | |||||||||| ||||||||||||    
T  152528 caatacaccccttgacacccacacaaaaatctgacatgtggtcatatggatcccgcacaaatacactttctctttcttcttctcttctc 152616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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