View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18759_low_10 (Length: 333)
Name: NF18759_low_10
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18759_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 31756403 - 31756086
Alignment:
| Q |
16 |
gatatagcacttggtgatgaacatggttgtgctgttcgaagattgaatggttctgttgtttgttggggtggaaaaggagaattttctgcggattctattg |
115 |
Q |
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| T |
31756403 |
gatatagcacttggtgatgaacatggttgtgctgttcgaagattgaatggttctgttgtttgttggggtggaaaaggagaattttctgcggattctattg |
31756304 |
T |
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| Q |
116 |
aaggggtttcttttgagttaattgtttctggttctaattttacttgtggtttgacaacaaccaatttttctgttgtttgttggggacctggttggtctaa |
215 |
Q |
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| T |
31756303 |
aaggggtttcttttgagttaattgtttctggttctaattttacttgtggtttgacaacaaccaatttttctgttgtttgttggggacctggttggtctaa |
31756204 |
T |
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| Q |
216 |
tggatcaaatggttctgaatctattcttcctttgtctcggattcttccggggccttgtgttcaatcttcttgtagtgagtgtggtatatatcctgattca |
315 |
Q |
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| T |
31756203 |
tggatcaaatggttctgaatctattcttcctttgtctcggattcttccggggccttgtgttcaatcttcttgtagtgagtgtggtatatatcctgattca |
31756104 |
T |
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| Q |
316 |
caatcattatgttctaac |
333 |
Q |
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| T |
31756103 |
caatcattatgttctaac |
31756086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 35559513 - 35559424
Alignment:
| Q |
121 |
gtttcttttgagttaattgtttctggttctaattttacttgtggtttgacaacaaccaatttttctgttgtttgttggggacctggttgg |
210 |
Q |
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| T |
35559513 |
gtttcttttgaggttattgtttctgcttccaattttacttgtggattgacaacaaacaatttttctgttgtttgttggggtcctagttgg |
35559424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 35559601 - 35559548
Alignment:
| Q |
33 |
tgaacatggttgtgctgttcgaagattgaatggttctgttgtttgttggggtgg |
86 |
Q |
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| T |
35559601 |
tgaacatagttgtgctattagaagatctaatggttctgttgtttgttggggtgg |
35559548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 35559376 - 35559337
Alignment:
| Q |
270 |
ttgtgttcaatcttcttgtagtgagtgtggtatatatcct |
309 |
Q |
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| T |
35559376 |
ttgtgttcaatcttcttgtagtgaatgtggtatgtatcct |
35559337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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