View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18759_low_16 (Length: 222)
Name: NF18759_low_16
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18759_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 390407 - 390217
Alignment:
| Q |
13 |
atcatcacaatcacaatcacaatcacaaaatcgaacaatgaatgaagaaatcgaaagcggagaaggtccaccaacaaacgatctatgttcaatctgtcac |
112 |
Q |
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| T |
390407 |
atcatcacaatcacaatcacaatcacaaaattgaacaatgaatgaagaaatcgaaagcggagaaggtccaccaacaaacgatctatgttcaatctgtcac |
390308 |
T |
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| Q |
113 |
ggaaacttccaactcccatgtcaagcaaattgttctcactggttttgcgctaactgcataatccaagtttggcaatattcttctcctcttc |
203 |
Q |
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| T |
390307 |
ggaaacttccaactcccatgtcaagcaaattgttctcactggttttgcgctaactgcataatccaagtttggcagtattcttctcctcttc |
390217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 384972 - 384837
Alignment:
| Q |
68 |
agcggagaaggtccaccaacaaacgatctatgttcaatctgtcacggaaacttccaactcccatgtcaagcaaattgttctcactggttttgcgctaact |
167 |
Q |
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||||| ||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
384972 |
agcggcgaaggtccagcaacgaacgatcgatgttcaatctgtcacgaaaacttccaactcccatgtcaagcaaattgttctcactggttttgtgcaaact |
384873 |
T |
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| Q |
168 |
gcataatccaagtttggcaatattcttctcctcttc |
203 |
Q |
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| T |
384872 |
gtattatccaagtttggcaatattcttctcctcttc |
384837 |
T |
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