View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18759_low_19 (Length: 202)

Name: NF18759_low_19
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18759_low_19
NF18759_low_19
[»] chr5 (10 HSPs)
chr5 (1-180)||(1163633-1163812)
chr5 (1-180)||(1849924-1850106)
chr5 (1-123)||(3299492-3299617)
chr5 (1-123)||(3392385-3392510)
chr5 (2-134)||(40418243-40418375)
chr5 (1-133)||(39879773-39879905)
chr5 (1-134)||(38987664-38987797)
chr5 (1-133)||(39726377-39726509)
chr5 (1-133)||(39399818-39399950)
chr5 (4-120)||(39168808-39168924)
[»] chr4 (2 HSPs)
chr4 (19-123)||(25912295-25912399)
chr4 (55-120)||(44444772-44444837)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 1163812 - 1163633
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacccggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163812 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacccggtg 1163713  T
Q  101 accatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163712 accatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggt 1163633  T

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Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 1849924 - 1850106
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaaacccg 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||| |    
T  1849924 cgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaaacctg 1850023  T
Q  98 gtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850024 gtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggt 1850106  T

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Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 3299492 - 3299617
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaaacccg 97  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  3299492 cgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccg 3299591  T
Q  98 gtgaccatgctcttggttatgacctg 123  Q
    ||||||||||||||||||||||||||    
T  3299592 gtgaccatgctcttggttatgacctg 3299617  T

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Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 3392385 - 3392510
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaaacccg 97  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  3392385 cgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccg 3392484  T
Q  98 gtgaccatgctcttggttatgacctg 123  Q
    ||||||||||||||||||||||||||    
T  3392485 gtgaccatgctcttggttatgacctg 3392510  T

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Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 40418243 - 40418375
Alignment:
Q  2 gtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggtg 100  Q
    |||||||| ||||  | ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40418243 gtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtg 40418341  T
Q  101 accatgctcttggttatgacctgcctgaaggaga 134  Q
    ||||||||||||||||||||||| ||| ||||||    
T  40418342 accatgctcttggttatgacctgtctggaggaga 40418375  T

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Target: chr5; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 39879773 - 39879905
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggt 99  Q
    ||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39879773 cgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggt 39879871  T
Q  100 gaccatgctcttggttatgacctgcctgaaggag 133  Q
    |||||||||||||||||||||||| ||| |||||    
T  39879872 gaccatgctcttggttatgacctgtctggaggag 39879905  T

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Target: chr5; HSP #7
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 38987664 - 38987797
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggt 99  Q
    ||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  38987664 cgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggt 38987762  T
Q  100 gaccatgctcttggttatgacctgcctgaaggaga 134  Q
    |||||||||||||||||||||||| ||| ||||||    
T  38987763 gaccatgctcttggttatgacctgtctggaggaga 38987797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 39726377 - 39726509
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggt 99  Q
    ||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  39726377 cgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggt 39726475  T
Q  100 gaccatgctcttggttatgacctgcctgaaggag 133  Q
    |||||||||||||||||||||||| ||| |||||    
T  39726476 gaccatgctcttggttatgacctgtctggaggag 39726509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 39399818 - 39399950
Alignment:
Q  1 cgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggt 99  Q
    ||||||||| ||||| | |||||||||||  || || ||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  39399818 cgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatga-cacaacttttcaaatcaggactcatcttggtcatattttaaaatccggt 39399916  T
Q  100 gaccatgctcttggttatgacctgcctgaaggag 133  Q
    ||| ||||||||||||||||| || ||| |||||    
T  39399917 gactatgctcttggttatgacttgtctggaggag 39399950  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 39168808 - 39168924
Alignment:
Q  4 ttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggtgac 102  Q
    |||||| ||||| | |||||||||||  ||||| ||||||||||| | |||| ||||||||||||  |||||||| |||| |||||||||| ||||||||    
T  39168808 ttagctgatgccgtggttgctcgtgtggaagattttggaaataatga-cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgac 39168906  T
Q  103 catgctcttggttatgac 120  Q
     |||||||||||||||||    
T  39168907 tatgctcttggttatgac 39168924  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 25912399 - 25912295
Alignment:
Q  19 gttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttat 117  Q
    ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  25912399 gttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattctaaaacccgatgaccatgctcttggttat 25912301  T
Q  118 gacctg 123  Q
    ||||||    
T  25912300 gacctg 25912295  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 44444837 - 44444772
Alignment:
Q  55 acttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 120  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44444837 acttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

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