View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18759_low_5 (Length: 455)
Name: NF18759_low_5
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18759_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 450
Target Start/End: Original strand, 35761419 - 35761849
Alignment:
| Q |
20 |
tgtcagccaccttgtaccgtaaaatggttcgtccatcatgcgacgtgttcataaatcatcgaggaatcgacacgaagaagaacattgcggggttgctcta |
119 |
Q |
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| T |
35761419 |
tgtcagccaccttgtaccgtaaaatggttcgtccatcatgcgacgtgttcataaatcatcgaggaatcgacacgaagaagaacattgcggggttgctcta |
35761518 |
T |
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| Q |
120 |
cgatcgtttgacgaagatgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttgatcatattgataaaggaattctaggt |
219 |
Q |
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| T |
35761519 |
cgatcgtttgacgaagatgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttgatcatattgataaaggaattctaggt |
35761618 |
T |
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| Q |
220 |
tgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaagagggttatcc |
319 |
Q |
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| T |
35761619 |
tgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaagagggttatcc |
35761718 |
T |
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| Q |
320 |
caattttctatgatgttaaaccttcccagcttgttgttaaggacaatggtacttgtcctgttaaagagcttcgaaggtttagtgctgcattagaggaagc |
419 |
Q |
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| T |
35761719 |
caattttctatgatgttaaaccttcccagcttgttgttaaggacaatggtacttgtcctgttaaagagcttcgaaggtttagtgctgcattagaggaagc |
35761818 |
T |
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| Q |
420 |
taaattcactgttggattaacctttgcttct |
450 |
Q |
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| T |
35761819 |
taaattcactgttggattaacctttgattct |
35761849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 308
Target Start/End: Complemental strand, 3393932 - 3393760
Alignment:
| Q |
136 |
atgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttgatcatattgataaaggaattctaggttgcaaagttggtgttg |
235 |
Q |
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| T |
3393932 |
atgggagtgagatcgtttttggacagtatgaacatgaaaccaggagacaaactatttcatcatatcgataaagcaattattggttgtaaggttggtgtta |
3393833 |
T |
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| Q |
236 |
ctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaa |
308 |
Q |
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| T |
3393832 |
ccgtgttctctcctcgttattgtgactcttattattgtctccacgaactcgctcttctgatggagacaaaaaa |
3393760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 3387326 - 3387244
Alignment:
| Q |
226 |
gttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaa |
308 |
Q |
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| T |
3387326 |
gttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacaaaaaa |
3387244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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