View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18759_low_6 (Length: 441)
Name: NF18759_low_6
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18759_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 45 - 425
Target Start/End: Complemental strand, 26323913 - 26323533
Alignment:
| Q |
45 |
taataatcgatttccacattgcatccttggaaaggaaatgacatgtaataatacaaagaagccgagtttaaggataacttaacaaattcatgaatagaat |
144 |
Q |
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| T |
26323913 |
taataatcgatttccacattgcatcctttgaaaggaaatgacatgtaataatacaaagaagccgagtttaaggataacttaacaaattcatgaatagaat |
26323814 |
T |
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| Q |
145 |
ggtgctttattagacaacaaacaaaatgatgcaaataaatgacacaaagatacatagctctagtacaaaatattgtgaagacctttcttctccaactcat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26323813 |
ggtgctttattagacaacaaacaaaatgatgcaaataaatgacacaaagatacatagctctagtacaaaatattgtgaagacctttcttctccaactcat |
26323714 |
T |
|
| Q |
245 |
tatatacagcactccatccagcttgtgttgggtgcaacccatcccaaaagaaacttgattctggattttcacaaaccaaatatttcttaacattattctc |
344 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26323713 |
tatatacagcattccatccagcttgtgttgggtgcaatccatcccaaaagaaacttgattctggattttcacaaaccaaatatttcttaacattattctc |
26323614 |
T |
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| Q |
345 |
gtctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatattatggcttgcagg |
425 |
Q |
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| T |
26323613 |
gtctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatattatggcttgcagg |
26323533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 222 - 419
Target Start/End: Complemental strand, 26329853 - 26329647
Alignment:
| Q |
222 |
aagacctttcttctccaactcattatatacagcactccatccagcttgtgttgggtgcaacccatcccaaaagaaacttgattctggattttcacaaacc |
321 |
Q |
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|||| |||||||||||||||||||||| |||||| |||| || || ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
26329853 |
aagatctttcttctccaactcattatacacagcattccaaccggcctgtgttgggtgcaactgatcccaaaagaaagttgattcaggattttcacaaacc |
26329754 |
T |
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| Q |
322 |
aaatatttcttaac---------attattctcgtctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatat |
412 |
Q |
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|||||||||||||| ||| || | |||||||||||||| ||||||| |||||||||||| |||||||||| |||||| | ||||| || | |
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| T |
26329753 |
aaatatttcttaaccttatttaaatttttataatctacacttccacacttatactcactgcttactccgacgcaacatggtttcaaacgttccttaatgt |
26329654 |
T |
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| Q |
413 |
tatggct |
419 |
Q |
| |
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||||||| |
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| T |
26329653 |
tatggct |
26329647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 399
Target Start/End: Complemental strand, 26343591 - 26343332
Alignment:
| Q |
145 |
ggtgctttattagacaacaaacaaaatgatgcaaataaatgacaca--aagatacatagctctagtacaaaatattgtgaagacctttcttctccaactc |
242 |
Q |
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||||| |||||| |||| |||||||| ||||||||| ||||||| ||||||||||||||||||| ||| | | ||||| ||||||||||||||||| |
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| T |
26343591 |
ggtgccttattaaacaagaaacaaaacaatgcaaatatgtgacacacaaagatacatagctctagtataaactttgatgaaggcctttcttctccaactc |
26343492 |
T |
|
| Q |
243 |
attatatacagcactccatccagcttgtgttgggtgcaacccatcccaaaagaaacttgattctggattttcacaaaccaaatatttcttaacattattc |
342 |
Q |
| |
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|||||| |||||| |||| || |||||||||||||| ||| ||||||||||||| ||||||| | |||||||||||||||||||| ||| | ||| |
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| T |
26343491 |
attatacacagcattccaacctgcttgtgttgggtgtaactgatcccaaaagaaagttgattcaaggttttcacaaaccaaatatttattagaagtatgt |
26343392 |
T |
|
| Q |
343 |
tc---gtctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaa |
399 |
Q |
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|| ||||||||||||||| |||||| | ||| ||||| ||||||||||||||||| |
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| T |
26343391 |
tcaaaatctacacttccacaagtatactcatcgctaactccgacgcaacatggcttcaaa |
26343332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 421
Target Start/End: Complemental strand, 26337237 - 26336958
Alignment:
| Q |
145 |
ggtgctttattagacaacaaacaaaatgatgcaaataaatgacacaaagatacatagctctagtacaaaatattgtgaagacctttcttctccaactcat |
244 |
Q |
| |
|
||||| |||||| |||| |||||||| ||| ||||| || ||||||| ||||| |||||||||| ||||| | ||||||||| ||||||||||||||| |
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| T |
26337237 |
ggtgccttattaaacaagaaacaaaacaatgtaaatagataacacaaacatacacagctctagtataaaatttgatgaagacctctcttctccaactcat |
26337138 |
T |
|
| Q |
245 |
tatatacagcactccatccagcttgtgttgggtgcaacccatcccaaaagaaacttgattctggattttcacaaaccaaatatttcttaacattattctc |
344 |
Q |
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|||| ||| || |||| || |||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||| ||| | ||| || |
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| T |
26337137 |
tatacacatcattccaacctgcttgtgttgggtgtaattgatcccaaaagaaagttgattcaagattttcacaaaccaaatatttattagtagtatgttc |
26337038 |
T |
|
| Q |
345 |
---gtctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatattatggcttg |
421 |
Q |
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|||||||||||| || |||||| | ||||||||| |||||||||||||||| | ||||| || |||||||||| |
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| T |
26337037 |
agaatctacacttccataagtatactcatcgcttactccgatgcaacatggcttcaaacgttccttaatgttatggcttg |
26336958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 42221650 - 42221717
Alignment:
| Q |
313 |
tcacaaaccaaatatttcttaacattattctcgtctacacttccacaattatactgactgcttactcc |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||| |||||||| |
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| T |
42221650 |
tcacaaaccaaatatttcttaacattattctcatcaacacttccacaaaaatacttactacttactcc |
42221717 |
T |
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