View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18759_low_7 (Length: 408)
Name: NF18759_low_7
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18759_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 47367042 - 47367177
Alignment:
| Q |
13 |
aaaatcaacacaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaattgggacatgagctctgattgctattcaccaagcaaaaga |
112 |
Q |
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| T |
47367042 |
aaaatcaacacaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaattgggacatgagctctgattgctattcaccaagcaaaaga |
47367141 |
T |
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| Q |
113 |
atgataaataataatcaacaacaaggatctcctagc |
148 |
Q |
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| T |
47367142 |
atgatcaataataatcaacaacaaggatctcctagc |
47367177 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 39455476 - 39455522
Alignment:
| Q |
34 |
aagatcaacaagcacaccaaaaacaagaataggaaggaattgggaca |
80 |
Q |
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|||||||||| |||||| ||||| ||| ||||||||||||||||||| |
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| T |
39455476 |
aagatcaacaggcacacaaaaaataaggataggaaggaattgggaca |
39455522 |
T |
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