View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18759_low_8 (Length: 383)
Name: NF18759_low_8
Description: NF18759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18759_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 7741341 - 7741643
Alignment:
| Q |
68 |
gttcaccattttgtattccttgatgcctttatcatcttctacaagttactgtttttaatatcacttcttttaattaatatccaatcaatcgataaagtat |
167 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7741341 |
gttcaccattttgtattccttggtgcctttatcatcttctacaacttactgtttttaatatcacttcttttaattaatatccaatcaatcgataaagtat |
7741440 |
T |
|
| Q |
168 |
tatttgcaaatctcttccaacttgtttgctacaggtttgttttactatagcaaagaaaatgacaggcaaacaatttgtgttaacaagtgcagtttacatt |
267 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7741441 |
tatttgcaaatctcttccatcttgtttgctacaggtttgttttactatagcaaagaaaatgacaggcaaacaatttgtgttaacaagtgcagtttacatt |
7741540 |
T |
|
| Q |
268 |
gtagacaagtatactcgatattagattcgcacgcaagttttctaacttctcaatgcttctcctaatttta----ctagaattaagcctatgaagtttaag |
363 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7741541 |
gtagacaagtatactcgatattagattcgtacgcaagttttctaacttctcaatgcttctcctaattttactagctagaattaagcctatgaagtttaag |
7741640 |
T |
|
| Q |
364 |
ctg |
366 |
Q |
| |
|
||| |
|
|
| T |
7741641 |
ctg |
7741643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 49765193 - 49765229
Alignment:
| Q |
329 |
ctaattttactagaattaagcctatgaagtttaagct |
365 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
49765193 |
ctaactttactataattaagcctatgaagtttaagct |
49765229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 69 - 362
Target Start/End: Complemental strand, 36657510 - 36657218
Alignment:
| Q |
69 |
ttcaccattttgtattccttgatgcctttatcatcttctacaagttactgttttt-aatatcacttcttttaattaatatccaatcaatcgataaagtat |
167 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
36657510 |
ttcaccgttttgtattccttggtgcctttatcatcttctacaacttattgttttttaataccacttcttttaattaatatc-aatcaaccgataaagtat |
36657412 |
T |
|
| Q |
168 |
tatttgcaaatctcttccaacttgtttgctacaggtttgttttactatagcaaagaaaatgacaggcaaacaatttgtgttaacaagtgcagtttacatt |
267 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36657411 |
tatttgcaaatctcttccatcttgtttgctacaggtttgttttactatagcaaagaaaacgatagg-aaacaatttgtgttaacaagtgcagtttacatt |
36657313 |
T |
|
| Q |
268 |
gtagacaagtatactcgatattagattcgcacgcaagttttctaacttctcaatgcttctcctaattttactagaattaagcctatgaagtttaa |
362 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||| || |||||||||| |||||||| ||||||||||||| |
|
|
| T |
36657312 |
gtagacaagtatactggatattagattcatatacaagttttctaacttttcaatgcttttcataattttactggaattaagtctatgaagtttaa |
36657218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 3215662 - 3215626
Alignment:
| Q |
329 |
ctaattttactagaattaagcctatgaagtttaagct |
365 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| |
|
|
| T |
3215662 |
ctaattttattaaaattaagcctatgaagtttaagct |
3215626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 17999457 - 17999421
Alignment:
| Q |
329 |
ctaattttactagaattaagcctatgaagtttaagct |
365 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17999457 |
ctaattttactataattaagcctatgaagtttaagct |
17999421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 38680116 - 38680152
Alignment:
| Q |
329 |
ctaattttactagaattaagcctatgaagtttaagct |
365 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
38680116 |
ctaactttactataattaagcctatgaagtttaagct |
38680152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University