View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1875_high_1 (Length: 434)
Name: NF1875_high_1
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1875_high_1 |
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| [»] scaffold0248 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 409
Target Start/End: Complemental strand, 15594134 - 15593742
Alignment:
| Q |
15 |
agttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaag |
114 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15594134 |
agttacaaagatcaatggtgcaattacagtggctacaaatttgcttgataagaagaataaccagcataatgaagtagatgttcttgagggtaatttgaag |
15594035 |
T |
|
| Q |
115 |
gagctcgagagcatgttcgaaaaccttgtagtcaagactgactagttatattcttctttgtttagcataacaaacatttaggttgattatcattatctaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |||| ||||||||||||||||||||||||||||| || |
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| T |
15594034 |
gagctcgagagcatgttcgaaaaccttgtagtcaagactggctagttttactcttctttgttcagcacaacaaacatttaggttgattatcattatcaaa |
15593935 |
T |
|
| Q |
215 |
aagtattgatgtttatgatgaaatctgcatggaacatgttacttaaattgtttgtgtgttttgtcttgttttctagttttagtagagcatatttg-aaac |
313 |
Q |
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|||||||||||||||||||||||| |||| | |||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||| |||| |
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| T |
15593934 |
aagtattgatgtttatgatgaaatttgcacgaaacatgttgcttaaattgtttgtgttttctgtcttgttttctagttttagt--agcatatttgaaaac |
15593837 |
T |
|
| Q |
314 |
actgcttccaaattaagatccctatcaggctcttgtgctttagttaataatcnnnnnnnggtttatttgagctttctttgcaccttgtctcccaaa |
409 |
Q |
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| T |
15593836 |
cttgcttccaaatcaagatccctatcaggcacttgtgctttagttaataatc-gtttttggtttatttgagctttctatggaccttgtcttccaaa |
15593742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 4679641 - 4679758
Alignment:
| Q |
33 |
tgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaaggagctcgagagcatgttc |
132 |
Q |
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| T |
4679641 |
tgcaattacagtggccaccaacttgcttgataagaataacgaacag---aaagaaatagatgttcttgaggatcatctgaaggagttggagagcatgttg |
4679737 |
T |
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| Q |
133 |
gaaaaccttgtagtcaagact |
153 |
Q |
| |
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||||| |||| |||||||||| |
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| T |
4679738 |
gaaaagcttgaagtcaagact |
4679758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 29464875 - 29464835
Alignment:
| Q |
90 |
agatgttcttgagggtaatctgaaggagctcgagagcatgt |
130 |
Q |
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| T |
29464875 |
agatgttcttgagggtcatctggaggagctggagagcatgt |
29464835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 8586778 - 8586921
Alignment:
| Q |
15 |
agttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaag |
114 |
Q |
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||||| |||||| ||| |||||||||| ||||| ||||||||||||||||||| || |||| | ||||| |||||||||||| || | |||||||| |
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| T |
8586778 |
agttaaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataa---ccaggagaatgacatagatgttcttgtggatcatctgaag |
8586874 |
T |
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| Q |
115 |
gagctcgagagcatgttcgaaaaccttgtagtcaagactgactagtt |
161 |
Q |
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||||| ||||||||||| ||| ||||| | ||||||| || |||||| |
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| T |
8586875 |
gagcttgagagcatgttggaagaccttttggtcaagagtggctagtt |
8586921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 8615793 - 8615676
Alignment:
| Q |
33 |
tgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaaggagctcgagagcatgttc |
132 |
Q |
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||||||||| |||||| ||||||||||||||| ||| || |||||| | ||||||||| ||||| || | | |||||||||||||| | || ||||| |
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| T |
8615793 |
tgcaattactgtggctacaaatttgcttgataggaataa---ccagcagagtgaagtagaagttctcgaagatcatctgaaggagctcaaaagtatgttg |
8615697 |
T |
|
| Q |
133 |
gaaaaccttgtagtcaagact |
153 |
Q |
| |
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||| |||||||| | |||||| |
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| T |
8615696 |
gaagaccttgtatttaagact |
8615676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 8658388 - 8658323
Alignment:
| Q |
89 |
tagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactg |
154 |
Q |
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| T |
8658388 |
tagatgttgttgaggatcatctgaaggagctggaaatcatgttggaaaagcttgtagtcaatactg |
8658323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 16663131 - 16663210
Alignment:
| Q |
82 |
aatgaagtagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactgactagtt |
161 |
Q |
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|||||||||||||||||||||| | ||||||||||||| ||||| ||||| || |||||||| ||||||||| |||||| |
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| T |
16663131 |
aatgaagtagatgttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgtaatcaagactgtctagtt |
16663210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 17757 - 17829
Alignment:
| Q |
191 |
tttaggttgattatcattatctaaaagtattgatgtttatgatgaaatctgcatggaacatgttacttaaatt |
263 |
Q |
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|||||||| ||||||||||||||| | |||||| |||||| | |||| ||||| |||||||||||||||||| |
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| T |
17757 |
tttaggttaattatcattatctaacattattgaagtttattgtaaaatttgcattgaacatgttacttaaatt |
17829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 365
Target Start/End: Complemental strand, 1767256 - 1767117
Alignment:
| Q |
225 |
gtttatgatgaaatctgcatggaacatgttacttaaattgtttgtgtgttttgtcttgttttctagttttagtagagcatatttg-aaacactgcttcca |
323 |
Q |
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||||||||| || | ||||| ||||||| |||||||||||||| ||| || | ||||||||| |||||||||| | |||||||| |||| |||||| | |
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|
| T |
1767256 |
gtttatgatcaagtttgcattgaacatgctacttaaattgtttctgttttctttcttgttttttagttttagt--aacatatttgaaaaccttgcttcaa |
1767159 |
T |
|
| Q |
324 |
aattaagatccctatcaggctcttgtgctttagttaataatc |
365 |
Q |
| |
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|| ||||||||| | || ||||||||| ||||||||||| |
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| T |
1767158 |
gatcaagatccctttatggttcttgtgctcaagttaataatc |
1767117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 30774330 - 30774289
Alignment:
| Q |
33 |
tgcaattacagtggctgcaaatttgcttgataagaagaatca |
74 |
Q |
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||||||| |||||||| ||||||||||||||||||| ||||| |
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| T |
30774330 |
tgcaattgcagtggctacaaatttgcttgataagaataatca |
30774289 |
T |
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