View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1875_high_3 (Length: 389)
Name: NF1875_high_3
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1875_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 34745278 - 34744898
Alignment:
| Q |
1 |
tacacatatatttccaacattcaataagttccaacatgtgtgtgannnnnnngaaatatggtggaaaaagaagctctcttattactttgtttaaagcgaa |
100 |
Q |
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| T |
34745278 |
tacacatatatttccaacattcaataagttccaacatgtgtgtgatttttttgaaacatggtggaaaaagaagctctcttattactttgtttaaagcgaa |
34745179 |
T |
|
| Q |
101 |
aaattatacttctgtactaaatccacggtaatcctcttacaaatcaccaaatgactacttattacatatatttaggagagggagaagcactagttcatac |
200 |
Q |
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| T |
34745178 |
aaattatacttatgtactaaatccacggtaatcctcttacaaatcaccaaatgactacttattacatatatttaggagagggagaagcactagttcatac |
34745079 |
T |
|
| Q |
201 |
attctcgatagagattcgaactctatcgattttgattacaaaactgagaagtcaccactgcgctaatgttcacgacatcatcgcaacctcataaacttta |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34745078 |
attctcgatggagattcgaactctatcgattttgattacaaaactgagaagtcaccactgcgctaatgttcacgacatcatcgcaacctcataaacttta |
34744979 |
T |
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| Q |
301 |
gaaagtatacttttttgacttatttttggttgattatatagcctattgatctcatcaagatgaagtgagacttagtattat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34744978 |
gaaagtatacttttttgacttatttttggttgattatatagcctattgatctcatcaagatgaagtgagacttagtattat |
34744898 |
T |
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