View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1875_high_5 (Length: 303)
Name: NF1875_high_5
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1875_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 6855396 - 6855698
Alignment:
| Q |
1 |
ttatatcgattctagttcattattataaaattagtggcatgtaagaaatgtaatttgataagcgatatgaatgggcataattatttgatactatataatc |
100 |
Q |
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| T |
6855396 |
ttatatcgattctagttcattattataaaattagtggcatgtaagaaatgtaatttgataagcgatatgaatgggcataattatttgatactatataatc |
6855495 |
T |
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| Q |
101 |
cggtcttgtatataagaaagnnnnnnnnttattcattgaataactattatatctaatctgtattataaaccaaatacattaattattgagtgcaacttat |
200 |
Q |
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| T |
6855496 |
cggtcttgtatataagcaatttatttatttatttattgaataactattatatctaatctatattataaaccaaatacattaattattgagtacaacttat |
6855595 |
T |
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| Q |
201 |
cattataaaacttatggataatctaatcaacgacccaaatcgataaactctgctatcatatttaatgtttatgtcgagtctaactcatttaaattagagt |
300 |
Q |
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| T |
6855596 |
cattataaaacttatggataatctaatcaacgacccaaatcgataaactctgctatcatatttaatgtttatgtcgagtctaactcatttaaattagagt |
6855695 |
T |
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| Q |
301 |
gtc |
303 |
Q |
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||| |
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| T |
6855696 |
gtc |
6855698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 48290045 - 48289997
Alignment:
| Q |
139 |
aataactattatatctaatctgtattataaaccaaatacattaattatt |
187 |
Q |
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| T |
48290045 |
aataactaatatatctcatcaatattataaaccaaatacattaattatt |
48289997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 10614607 - 10614571
Alignment:
| Q |
150 |
tatctaatctgtattataaaccaaatacattaattat |
186 |
Q |
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| T |
10614607 |
tatctaatctatattaaaaaccaaatacattaattat |
10614571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 52768790 - 52768762
Alignment:
| Q |
159 |
tgtattataaaccaaatacattaattatt |
187 |
Q |
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| T |
52768790 |
tgtattataaaccaaatacattaattatt |
52768762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 13865837 - 13865781
Alignment:
| Q |
131 |
attcattgaataactattatatctaatctgtattataaaccaaatacattaattatt |
187 |
Q |
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| T |
13865837 |
attcattgaataactattgtatttgatctatattataaagtcaatacattaattatt |
13865781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 39515040 - 39514984
Alignment:
| Q |
131 |
attcattgaataactattatatctaatctgtattataaaccaaatacattaattatt |
187 |
Q |
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||||||| |||||||||| ||||| || | |||||||||||| |||||||| ||||| |
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| T |
39515040 |
attcattaaataactattgtatctgatatatattataaaccagatacattagttatt |
39514984 |
T |
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