View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1875_high_9 (Length: 232)
Name: NF1875_high_9
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1875_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 43467620 - 43467418
Alignment:
| Q |
21 |
acaaggcacaagcgaagatgcattccattctg-aacagtaagcttttgatatcaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
119 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43467620 |
acaaggcacaggcgaagatgcattccattccataacagtaagcttttgataccaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
43467521 |
T |
|
| Q |
120 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcatct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43467520 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcatat |
43467421 |
T |
|
| Q |
220 |
cag |
222 |
Q |
| |
|
||| |
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|
| T |
43467420 |
cag |
43467418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 10644127 - 10643927
Alignment:
| Q |
21 |
acaaggcacaagcgaagatgcattccattctg-aacagtaagcttttgatatcaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10644127 |
acaaggcacaagcgaagatgcattccattccataacagtaagcttttgataccaaacaacaagatagaactaaaaatgagatcaatacactttggtttac |
10644028 |
T |
|
| Q |
120 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcatct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
10644027 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcaacttcactaactttt--tctttgtttgtgctattggcaagctaacatgttcttcatat |
10643930 |
T |
|
| Q |
220 |
cag |
222 |
Q |
| |
|
||| |
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|
| T |
10643929 |
cag |
10643927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 23536231 - 23536030
Alignment:
| Q |
21 |
acaaggcacaagcgaagatgcattccattctg-aacagtaagcttttgatatcaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
119 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23536231 |
acaaggcgcaagcgaagatgcat-ccattccataacagtaaacttttgataccaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
23536133 |
T |
|
| Q |
120 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcatct |
219 |
Q |
| |
|
||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
23536132 |
ttgaagcttcactaaagtcattgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcatat |
23536033 |
T |
|
| Q |
220 |
cag |
222 |
Q |
| |
|
||| |
|
|
| T |
23536032 |
cag |
23536030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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