View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1875_low_10 (Length: 270)
Name: NF1875_low_10
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1875_low_10 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 16321 - 16564
Alignment:
| Q |
10 |
gttttcattttgtttggaatttataatggcaggggactatctacttgatgctctatacaactttggcaagtcaaatatgtttgtagaatcacttaaagca |
109 |
Q |
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| T |
16321 |
gtttacatttttttttgaatttataatggcaggggactatctacttgatgctctatacaactttggcaagtcaaatatgtatgtagaatcacttaaagca |
16420 |
T |
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| Q |
110 |
ttacgtggtcaacaaactaataagcagaatgtttcaagagaggtaattttacaagaagcatgtgaagtggcttcttgttcctatgagagaaatacaaatt |
209 |
Q |
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| T |
16421 |
ttacgtggtcaacaaactaataagcagaatgtttcaagagacgtaattttacaagaagcatgtgaagtggcttcttgttcctatgagagaaacacaaatt |
16520 |
T |
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| Q |
210 |
ggggtaacgaggtaagaacataaatacctatagaaacacttaac |
253 |
Q |
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| T |
16521 |
ggggtaatgaggtaagaacataaatacatatagaaacacttaac |
16564 |
T |
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Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 16382504 - 16382293
Alignment:
| Q |
24 |
tggaatttataatggcaggggactatctacttgatgctctatacaactttggcaagtcaaatatgtttgtagaatcacttaaagcattacgtggtcaaca |
123 |
Q |
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| T |
16382504 |
tggaatttataatggcagtggactatctacttgatgctcaaaacaactttggcaagtctactatgtatgtagaatcactgaaagcaatacgtggtcaaca |
16382405 |
T |
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| Q |
124 |
aactaataagcagaatgtttcaagagaggtaattttacaagaagcatgtgaagtggcttcttgttcctatgagagaaatacaaattggggtaacgaggta |
223 |
Q |
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| T |
16382404 |
aactactaagaagaatacttcaagagatgtaattttacaagaagcatgtgaagtggcttcttgttcctatgagagaaacacaaattggggtaatgaggta |
16382305 |
T |
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| Q |
224 |
agaacataaata |
235 |
Q |
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| T |
16382304 |
agaatataaata |
16382293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 233
Target Start/End: Complemental strand, 17580384 - 17580189
Alignment:
| Q |
38 |
gcaggggactatctacttgatgctctatacaactttggcaagtcaaatatgtttgtagaatcacttaaagcattacgtggtcaacaaactaataagcaga |
137 |
Q |
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| T |
17580384 |
gcaggggactatctacttgatgctcaaaccaactatggcaagtctactatgtatgtagagtcactgaaagcaatatttggtcagcaaactactaatcaaa |
17580285 |
T |
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| Q |
138 |
atgtttcaagagaggtaattttacaagaagcatgtgaagtggcttcttgttcctatgagagaaatacaaattggggtaacgaggtaagaacataaa |
233 |
Q |
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| T |
17580284 |
atgcttcaagagatgtaagtttacaagaagcgagtgtagcggcttcttgtacctatgaaagtaacacaaattggggtactgaggtaagaacataaa |
17580189 |
T |
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