View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1875_low_12 (Length: 222)
Name: NF1875_low_12
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1875_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 5051458 - 5051573
Alignment:
| Q |
90 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggt |
188 |
Q |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggt |
5051557 |
T |
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| Q |
189 |
ttgcaggagtagaaag |
204 |
Q |
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| T |
5051558 |
ttgcaggagtagaaag |
5051573 |
T |
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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 51273957 - 51273794
Alignment:
| Q |
43 |
tggtagagtctaccatgtatggttttcttgcagagaatcaagccatttgaaaatccaacaattctcgaatataag-gatg-atttatcttgttatattgc |
140 |
Q |
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| T |
51273957 |
tggtagactctaccacgtgtggttttcttgcagagaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgt |
51273858 |
T |
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| Q |
141 |
tgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggtttgcaggagtagaaag |
204 |
Q |
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| T |
51273857 |
caagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaag |
51273794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 51273919 - 51273963
Alignment:
| Q |
19 |
gtttctctgcaagaaaaccacacgtggtagagtctaccatgtatg |
63 |
Q |
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| T |
51273919 |
gtttctctgcaagaaaaccacacgtggtagagtctaccatgtatg |
51273963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 14907986 - 14907823
Alignment:
| Q |
43 |
tggtagagtctaccatgtatggttttcttgcagagaatcaagccatttgaaaatccaacaattctcgaatataag-gatgat-ttatcttgttatattgc |
140 |
Q |
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||||||| ||||| | || ||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||| || | || ||||||||||||| |
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| T |
14907986 |
tggtagactctactacgtgtggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttgttatattgt |
14907887 |
T |
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| Q |
141 |
tgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggtttgcaggagtagaaag |
204 |
Q |
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| T |
14907886 |
cgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggttttcaggagtagaaag |
14907823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 14907948 - 14907989
Alignment:
| Q |
19 |
gtttctctgcaagaaaaccacacgtggtagagtctaccatgt |
60 |
Q |
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| T |
14907948 |
gtttctgtgcaagaaaaccacacgtagtagagtctaccatgt |
14907989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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