View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1875_low_5 (Length: 376)

Name: NF1875_low_5
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1875_low_5
NF1875_low_5
[»] chr7 (12 HSPs)
chr7 (45-147)||(1575845-1575952)
chr7 (45-147)||(27392593-27392690)
chr7 (45-147)||(28694690-28694787)
chr7 (54-147)||(323616-323709)
chr7 (65-147)||(36482647-36482729)
chr7 (55-143)||(6714223-6714311)
chr7 (65-143)||(36582535-36582613)
chr7 (92-147)||(10286416-10286471)
chr7 (59-143)||(31280188-31280272)
chr7 (101-147)||(8937846-8937892)
chr7 (111-147)||(29988049-29988085)
chr7 (311-365)||(662819-662873)
[»] chr5 (11 HSPs)
chr5 (45-147)||(40987342-40987449)
chr5 (60-147)||(13554770-13554857)
chr5 (54-147)||(33160520-33160613)
chr5 (59-147)||(13521493-13521581)
chr5 (54-143)||(1495899-1495988)
chr5 (91-143)||(27110661-27110713)
chr5 (65-143)||(41061209-41061287)
chr5 (59-147)||(42716134-42716222)
chr5 (59-139)||(35449663-35449742)
chr5 (90-147)||(12291415-12291472)
chr5 (62-147)||(4986183-4986268)
[»] chr4 (18 HSPs)
chr4 (45-147)||(24575154-24575261)
chr4 (55-147)||(9279927-9280019)
chr4 (54-147)||(47498851-47498944)
chr4 (55-133)||(7700297-7700375)
chr4 (54-143)||(42414560-42414649)
chr4 (59-147)||(46251939-46252027)
chr4 (72-147)||(18780958-18781033)
chr4 (57-143)||(3756969-3757055)
chr4 (49-143)||(42429995-42430089)
chr4 (85-147)||(47997031-47997093)
chr4 (65-133)||(6184084-6184152)
chr4 (95-143)||(34276954-34277002)
chr4 (56-147)||(20580594-20580685)
chr4 (49-147)||(24319044-24319142)
chr4 (89-139)||(31568178-31568228)
chr4 (89-147)||(37602649-37602707)
chr4 (59-147)||(24859010-24859098)
chr4 (45-133)||(40436458-40436541)
[»] chr8 (17 HSPs)
chr8 (45-147)||(6345307-6345404)
chr8 (45-147)||(31127258-31127355)
chr8 (45-147)||(37948942-37949039)
chr8 (45-147)||(43620036-43620143)
chr8 (45-133)||(1265121-1265214)
chr8 (55-147)||(26721170-26721262)
chr8 (54-147)||(32906905-32906998)
chr8 (55-147)||(13470866-13470958)
chr8 (64-147)||(26721289-26721372)
chr8 (54-147)||(4602598-4602691)
chr8 (54-143)||(4267351-4267440)
chr8 (85-147)||(42200110-42200172)
chr8 (59-147)||(3106185-3106273)
chr8 (49-143)||(3773828-3773920)
chr8 (55-147)||(10183246-10183337)
chr8 (89-144)||(27809007-27809062)
chr8 (45-141)||(34191073-34191169)
[»] chr1 (14 HSPs)
chr1 (227-315)||(44667495-44667583)
chr1 (65-147)||(14461718-14461800)
chr1 (45-147)||(5559395-5559492)
chr1 (49-143)||(41198513-41198607)
chr1 (54-137)||(24063925-24064008)
chr1 (49-147)||(16902574-16902672)
chr1 (85-147)||(41074905-41074967)
chr1 (54-143)||(24614749-24614838)
chr1 (66-147)||(33719615-33719696)
chr1 (49-139)||(35672103-35672193)
chr1 (54-147)||(7004677-7004770)
chr1 (54-147)||(22172875-22172968)
chr1 (310-365)||(44667676-44667731)
chr1 (45-134)||(31092063-31092152)
[»] chr6 (8 HSPs)
chr6 (45-147)||(7608279-7608386)
chr6 (91-147)||(16705398-16705454)
chr6 (54-147)||(21946712-21946805)
chr6 (45-147)||(3901136-3901238)
chr6 (46-147)||(10484386-10484485)
chr6 (85-144)||(10386157-10386216)
chr6 (49-124)||(13531320-13531395)
chr6 (71-144)||(33747876-33747949)
[»] chr2 (8 HSPs)
chr2 (45-147)||(16672014-16672122)
chr2 (71-143)||(21352338-21352410)
chr2 (49-143)||(22596081-22596175)
chr2 (92-147)||(18511559-18511614)
chr2 (54-143)||(42295822-42295910)
chr2 (71-143)||(7753802-7753871)
chr2 (109-147)||(10997254-10997292)
chr2 (61-138)||(34439851-34439928)
[»] chr3 (10 HSPs)
chr3 (45-133)||(37282644-37282737)
chr3 (54-147)||(32055882-32055975)
chr3 (55-133)||(19636560-19636638)
chr3 (54-147)||(25706303-25706397)
chr3 (56-143)||(1030467-1030554)
chr3 (64-133)||(39717243-39717312)
chr3 (56-143)||(19997380-19997468)
chr3 (54-147)||(29283002-29283090)
chr3 (59-138)||(48085313-48085392)
chr3 (85-139)||(40166829-40166883)
[»] scaffold0034 (1 HSPs)
scaffold0034 (85-147)||(47798-47860)
[»] scaffold0717 (1 HSPs)
scaffold0717 (56-147)||(5492-5583)
[»] scaffold0396 (1 HSPs)
scaffold0396 (55-133)||(1278-1356)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 1575952 - 1575845
Alignment:
Q  45 ttacttttgcggttcggtttggttcagtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    ||||||||||||||||||||||||| |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575952 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 1575853  T
Q  140 caaaaata 147  Q
    ||||||||    
T  1575852 caaaaata 1575845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 27392690 - 27392593
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27392690 ttacttttgcggttcggtttggtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggttttttcaaaacaacatccaaacacatccaaaa 27392596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 28694787 - 28694690
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||| ||||||||||||||||||     |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  ||||    
T  28694787 ttactattgcggttcggtttggtt-----ttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacatccaaacacataaaaaa 28694693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 323616 - 323709
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||| ||||||||| |||||||||| |  ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  323616 cggttctgtttggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaata 323709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 36482647 - 36482729
Alignment:
Q  65 ggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| ||||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  36482647 ggttcggttttgaaaagacaatccgaaaaccgatccgatcatagtggtttttctaaaacaacatccaaacacatccaaaaata 36482729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 6714223 - 6714311
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||| |||| ||||||||||||| || |  || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6714223 ggtttggttcggttcagttttgagaaagtgattcgaaatccgatccgatcctagcggtttttacaaaataacatccaaacacatccaaa 6714311  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 36582535 - 36582613
Alignment:
Q  65 ggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    ||||| |||||||||| |  ||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||    
T  36582535 ggttcggttttgaaaaagtgatccgaaatccgatcagatcttagcggtttttacaaaacaacatccaaacgcatccaaa 36582613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 10286471 - 10286416
Alignment:
Q  92 atccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||| || || ||||||||||| |||||||||||||||||||||||||||||||    
T  10286471 atccgaaccaattatagcggttttgccaaaacaacatccaaacacatccaaaaata 10286416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 31280188 - 31280272
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    ||||| ||||| |||||||||| |  |||| ||||||||||||||| || || ||||| |||||||||||||||||  |||||||    
T  31280188 cggttcggttcggttttgaaaaagtgatccaaaatccgatccgatcttaacgatttttacaaaacaacatccaaacgtatccaaa 31280272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 8937846 - 8937892
Alignment:
Q  101 gatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  8937846 gatcctagcggtttttacaaaacaacatccaaacgcatccaaaaata 8937892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 29988049 - 29988085
Alignment:
Q  111 gtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||| ||||||||||||||||||||||||||||||    
T  29988049 gtttttacaaaacaacatccaaacacatccaaaaata 29988085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 662819 - 662873
Alignment:
Q  311 ttttgccccttttgaattgattttttctctttctaaaattacatttaactttcaa 365  Q
    ||||||| ||||||| |||| ||||||||||||||||||||  || |||||||||    
T  662819 ttttgcctcttttgagttgactttttctctttctaaaattatcttcaactttcaa 662873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 40987449 - 40987342
Alignment:
Q  45 ttacttttgcggttcggtttggttcagtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    ||||||||||||||||||||||||| |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40987449 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 40987350  T
Q  140 caaaaata 147  Q
    ||||||||    
T  40987349 caaaaata 40987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 13554857 - 13554770
Alignment:
Q  60 ggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||| |||||||||| ||||| ||||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||    
T  13554857 ggtttggttcggttttgaaaatgcaattcgaaatccgatctaattatagcggtttttccaaaacaacatccaaacacatctaaaaata 13554770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 33160613 - 33160520
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||||||||||  ||||||||| |  ||||||||||||| | ||||||| | |||||||||||||||| ||||||||||||||||||||    
T  33160613 cggttcggtttggttcgattttgaaaaggtgatccgaaatccgaactgatcataacagtttttccaaaacaacctccaaacacatccaaaaata 33160520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 13521581 - 13521493
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| ||||| |||||||||| |||||  |||||||||||   ||||||||||| ||||||||||||||| |||||||||||||||||    
T  13521581 cggttcggttcggttttgaaaatgcaatttgaaatccgatctagtcatagcggttattccaaaacaacatctaaacacatccaaaaata 13521493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 1495899 - 1495988
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||| ||||  ||| |||||||||| |  |||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  1495899 cggttctgtttaattcggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaacacatccaaa 1495988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 27110713 - 27110661
Alignment:
Q  91 aatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  27110713 aatccgatccgatcttagcggtttttacaaaacaacatccaaacacatccaaa 27110661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 41061287 - 41061209
Alignment:
Q  65 ggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    ||||| |||||||||| | ||||| ||||||| ||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  41061287 ggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaacgcatccaaa 41061209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 42716134 - 42716222
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||||||||||||||| | |||||||||||  |  ||||| ||||  ||||| ||||||||||||||||| ||| ||||||||    
T  42716134 cggtttggttcagttttgaaaaagtaatccgaaatctaaatcgatcctagctttttttacaaaacaacatccaaacgcattcaaaaata 42716222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 35449663 - 35449742
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    |||||||||||| ||||||||| |  |||| ||| |||| |||||| ||||||||||| ||||||||||||||||| ||||    
T  35449663 cggtttggttcaattttgaaaa-gtgatccaaaagccgaaccgatcttagcggtttttacaaaacaacatccaaacgcatc 35449742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 12291415 - 12291472
Alignment:
Q  90 aaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||||| ||| ||| ||||||| ||||||||||||||||  ||||||||||||    
T  12291415 aaatccgatccaatcttagaggtttttacaaaacaacatccaaatgcatccaaaaata 12291472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 4986268 - 4986183
Alignment:
Q  62 tttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||| |||||||||| |  |||| ||||| |||  |||| ||| ||||| | ||||||||||||||||| |||| |||||||    
T  4986268 tttggttcggttttgaaaaagtgatcctaaatctgatttgatcctagtggtttatacaaaacaacatccaaacgcatcaaaaaata 4986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 24575154 - 24575261
Alignment:
Q  45 ttacttttgcggttcggtttggttcagtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    ||||||||||||||||||||||||| |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24575154 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 24575253  T
Q  140 caaaaata 147  Q
    ||||||||    
T  24575254 caaaaata 24575261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 9280019 - 9279927
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9280019 ggttaggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatccaaaaata 9279927  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 47498851 - 47498944
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||| ||||| ||||| |||| |  ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  47498851 cggttcggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 47498944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 7700375 - 7700297
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  7700375 ggtttggttcggttcagttttgaaaacgcaatctgaaattcgatccgatcatagcggtttttctaaaacaacatccaaa 7700297  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 42414560 - 42414649
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||||||| |||||||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  42414560 cggttcggtttggttcggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 42414649  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 46251939 - 46252027
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| ||||| |||||||||| |  ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  46251939 cggttcggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggcttttccaaaacaacatccaaacacatccaaaaata 46252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 18780958 - 18781033
Alignment:
Q  72 ttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||||| ||| ||||||| |||| ||||||| ||||||||||||||||| || ||||||||||||||||||    
T  18780958 ttttgaaaacgtaattcgaaatctgatctgatcataacggtttttccaaaacaaaattcaaacacatccaaaaata 18781033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 3757055 - 3756969
Alignment:
Q  57 ttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    ||||||||||||| |||||||||| |  |||||||||||||||||||| || ||||||||  |||||||||| ||||| ||||||||    
T  3757055 ttcggtttggttcggttttgaaaaagtgatccgaaatccgatccgatcttaacggtttttaaaaaacaacattcaaacgcatccaaa 3756969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 42430089 - 42429995
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    ||||||| ||||||||||||  |||||||||| |  ||||||||| ||||||||||  |||||||||| |||||||||||||||||  |||||||    
T  42430089 ttttgcgtttcggtttggtttggttttgaaaaagtgatccgaaattcgatccgatctgagcggtttttacaaaacaacatccaaacggatccaaa 42429995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 47997031 - 47997093
Alignment:
Q  85 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||| |||||||    
T  47997031 atccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagcacatcgaaaaata 47997093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 6184084 - 6184152
Alignment:
Q  65 ggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    |||| ||||||||||| |  |||||||||||||||||||| || || ||||| ||||||||||||||||    
T  6184084 ggtttagttttgaaaaagtgatccgaaatccgatccgatcctaacgatttttacaaaacaacatccaaa 6184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 34277002 - 34276954
Alignment:
Q  95 cgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  34277002 cgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 34276954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 20580685 - 20580594
Alignment:
Q  56 gttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||||||  |||||||||| |  ||| |||||||||||||||| ||||  || || ||||||||||| ||| | ||||||||||||    
T  20580685 gttcggtttggtttggttttgaaaaagtgatctgaaatccgatccgatcctagcaattcttacaaaacaacattcaagcgcatccaaaaata 20580594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 24319142 - 24319044
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| ||||||||||||||| ||||||| || |  |||| |||| | | |||||| || |||||||   |||||||||||||||| ||||||||||||    
T  24319142 ttttgtggttcggtttggttcggttttgagaaagtgatccaaaattcaaaccgatcctaacggttttgataaaacaacatccaaacgcatccaaaaata 24319044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 31568178 - 31568228
Alignment:
Q  89 gaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    ||||||||||||| || ||||||||||| ||||||||||||||| ||||||    
T  31568178 gaaatccgatccggtcttagcggtttttacaaaacaacatccaaccacatc 31568228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 37602649 - 37602707
Alignment:
Q  89 gaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||| ||||||||| |||| |||||| ||||| ||||| ||||||||||||||||||    
T  37602649 gaaatcagatccgatcctagcagtttttacaaaagaacattcaaacacatccaaaaata 37602707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 24859098 - 24859010
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| ||||| ||||||||||  |||||| ||||||||||| |||  | |||||||  |||||   ||||||||||||||||| ||||    
T  24859098 cggttcggttcggttttgaaaaatcaatccaaaatccgatccaatccaaacggttttcacaaaatgtcatccaaacacatccaataata 24859010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 40436541 - 40436458
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    ||||||||||||||||||||||||     ||||||| |  ||||||| ||||||| |||| || |  ||||| ||||||||||||||||    
T  40436541 ttacttttgcggttcggtttggtt-----ttgaaaaagtgatccgaagtccgatctgatcgtaacaatttttacaaaacaacatccaaa 40436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 6345404 - 6345307
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6345404 ttacttttgcggttcggtttggtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 6345310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 31127258 - 31127355
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31127258 ttacttttgcggttcggtttggtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 31127352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 37948942 - 37949039
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37948942 ttacttttgcggttcggtttggtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 37949036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 43620036 - 43620143
Alignment:
Q  45 ttacttttgcggttcggtttggttcagtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    ||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43620036 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaagcaacatccaaacacatc 43620135  T
Q  140 caaaaata 147  Q
    ||||||||    
T  43620136 caaaaata 43620143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 1265214 - 1265121
Alignment:
Q  45 ttacttttgcggttcggtttggttc-----agttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    |||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1265214 ttacttttgcggttcggtttggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 1265121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 26721170 - 26721262
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||| |||| ||||| |||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26721170 ggtttggttcggttcggttttgaaaacgcaatccaaaataagatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 26721262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 32906998 - 32906905
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||||||||| |||||||||| |  ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  32906998 cggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaata 32906905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 13470958 - 13470866
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||| |||||||||| |||||||||| |||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  13470958 ggtttggtttggttcggttttgaaaaggcaaaccgaaaaccgatccgatcgtagcgttttttccaaaacaacatccaaacacatccaaaaata 13470866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 26721289 - 26721372
Alignment:
Q  64 tggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||| |||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  26721289 tggttcggttttgaaaacgcaatccgaaatctgatttgatcatagcggtttttccaaaacaacgtccaaacacatccaaaaata 26721372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 4602691 - 4602598
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||||||||| |||||||||| |  ||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||    
T  4602691 cggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacgtccaaaaata 4602598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 4267440 - 4267351
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||||||| |||||||||| |  |||| ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  4267440 cggttcggtttggttcggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaacgcatccaaa 4267351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 42200110 - 42200172
Alignment:
Q  85 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||| |||||||    
T  42200110 atccgaaattcgatccgatcataacggtttttataaaacaacatccaaacacatctaaaaata 42200172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 3106273 - 3106185
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| ||||| ||||||| || |  |||| ||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||    
T  3106273 cggttcggttcggttttgagaaagtgatccaaaatccgatacgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaata 3106185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 3773920 - 3773828
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    ||||||||||||||||||||  |||||||||| |  |||| ||||||||||| ||| ||| ||||||| | ||||||||||||||| ||||||||    
T  3773920 ttttgcggttcggtttggtttggttttgaaaaagtgatccaaaatccgatcc-atcttagtggtttttac-aaacaacatccaaacgcatccaaa 3773828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 10183246 - 10183337
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||| |||||| |||| |||||||||  | || ||||||||||||| ||| || | ||||||   ||||||||||||||||||||||||||||    
T  10183246 ggtttggtttgattca-ttttgaaaaatcgattcgaaatccgatccaatcttaacagtttttaggaaacaacatccaaacacatccaaaaata 10183337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 27809007 - 27809062
Alignment:
Q  89 gaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    |||||||||||||||| || |||||||| | || |||||| |||||||||||||||    
T  27809007 gaaatccgatccgatcttaacggtttttactaaccaacattcaaacacatccaaaa 27809062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 34191169 - 34191073
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcca 141  Q
    ||||||||| ||||||||||| ||  ||||||| || |  | |||||||| |||  |||| |||||| |||  |||||||||||||| |||||||||    
T  34191169 ttacttttgtggttcggtttgttttggttttgagaaagtgacccgaaatctgatatgatcctagcggatttgacaaaacaacatccagacacatcca 34191073  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 44667495 - 44667583
Alignment:
Q  227 gatccaaatacctcaatttttggagagagaaacgtaataaagggaaaagtattaaaacaacacatgtcacacagtaaatagaagttttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  44667495 gatccaaatacctcaatttttggagagagaaacgtaataaagggagaagtaataaaacaacacatgtcacacagtaaatagaagttttg 44667583  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 14461800 - 14461718
Alignment:
Q  65 ggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14461800 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 14461718  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 5559492 - 5559395
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||||||||||||||||||||||     ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5559492 ttacttttgcggttcggtttggtt-----ttgaaaatgcaatccgaaatctgatccgatcatggcggtttttccaaaacaacatccaaacacatccaaaa 5559398  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 41198513 - 41198607
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  41198513 ttttgcggttcggtttggttcagttttggaaaagtgatccgaaatccgatccgatcttagcggtttttacaaaacaacatccaatcacatccaaa 41198607  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 24063925 - 24064008
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaca 137  Q
    |||||||||||| ||  |||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  24063925 cggttcggtttgatttggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacaca 24064008  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 16902672 - 16902574
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||||||||||||||| |||||||||| |  |||| ||||   ||| |||| | || |||||| |||||||||||||||||||||| |||||||    
T  16902672 ttttgcggttcggtttggttcggttttgaaaaagtgatccaaaatttaatctgatccttgcagtttttgcaaaacaacatccaaacacatctaaaaata 16902574  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 41074967 - 41074905
Alignment:
Q  85 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||| | ||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  41074967 atccgaaattcaatctgaccatagcggttttttcaaaacaacatccaaacacatccaaaaata 41074905  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 24614838 - 24614749
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||||||| ||||| |||| |  |||| ||||| ||||||||| ||||||||||| |||||| |||||||||  ||||||||    
T  24614838 cggttcggtttggttcggttttaaaaaagtgatccaaaatctgatccgatcttagcggtttttacaaaacgacatccaaaagcatccaaa 24614749  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 33719615 - 33719696
Alignment:
Q  66 gttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||||||||| |  ||| |||||  ||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||    
T  33719615 gttcagttttgaaaaagtgatctgaaatttgattcgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaata 33719696  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 35672103 - 35672193
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    ||||||||||||||||||||| || | ||||| |  || | |||| ||||| |||| |||||||||||  |||| ||||||||||||||||    
T  35672103 ttttgcggttcggtttggttcggtatcgaaaaagtgattcaaaattcgatctgatcttagcggtttttaaaaaataacatccaaacacatc 35672193  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 7004770 - 7004677
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||| ||||||||| ||||||||||  |||||| ||||||||||| |||  |||||||||  |||||   ||| ||||||||||||| ||||    
T  7004770 cggttcagtttggttcggttttgaaaaatcaatccaaaatccgatccaatccaagcggttttcacaaaatgtcattcaaacacatccaataata 7004677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 22172968 - 22172875
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||| ||||||||||||||||||||||  |||||| ||||| ||| | |||  |||||||||| ||||    ||||||||||||||||| ||||    
T  22172968 cggtccggtttggttcagttttgaaaaatcaatccaaaatctgattcaatccaagcggtttttacaaagtgtcatccaaacacatccaataata 22172875  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 44667676 - 44667731
Alignment:
Q  310 gttttgccccttttgaattgattttttctctttctaaaattacatttaactttcaa 365  Q
    |||||| ||||||| ||||||||||||||||||  |||||||| || |||||||||    
T  44667676 gttttggcccttttcaattgattttttctcttttcaaaattaccttcaactttcaa 44667731  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 31092063 - 31092152
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaac 134  Q
    ||||||||| ||||||||||| |||| |||||| || |   || |||||| |||| |||| |||  |||||| |||||||||||||||||    
T  31092063 ttacttttgtggttcggtttgattcaattttgagaaagtggtctgaaatctgatctgatcttagttgtttttacaaaacaacatccaaac 31092152  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 7608279 - 7608386
Alignment:
Q  45 ttacttttgcggttcggtttggttcagtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    ||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7608279 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatc 7608378  T
Q  140 caaaaata 147  Q
    ||||||||    
T  7608379 caaaaata 7608386  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 16705398 - 16705454
Alignment:
Q  91 aatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16705398 aatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 16705454  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 21946805 - 21946712
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||| |||||||||| ||||||||||    ||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||    
T  21946805 cggtttggtttggttcggttttgaaaagctgatccgaaatccgaaccaattatagcggtttttccaaaacaacatccaaacacatcaaaaaata 21946712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 3901136 - 3901238
Alignment:
Q  45 ttacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||||||||||||||||| ||||| ||||| |||| |  ||||||| ||| ||| |||| | ||||||||  |||||||||||||||||||||||||||    
T  3901136 ttacttttgcggttcggttcggttcggttttaaaaaagtgatccgaagtccaatctgatcttggcggttttggcaaaacaacatccaaacacatccaaaa 3901235  T
Q  145 ata 147  Q
    |||    
T  3901236 ata 3901238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 10484386 - 10484485
Alignment:
Q  46 tacttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaa 145  Q
    |||||||||||||| ||| ||  ||||||||| || |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||  |||||    
T  10484386 tacttttgcggttcagttcgg--cagttttgagaaagcaatccgaaatccaatccgatcatagcggtttttagaagacaacatccaaacgcattaaaaaa 10484483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 10386216 - 10386157
Alignment:
Q  85 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    ||||||||||||||  |||| ||||||||||| ||||||||||||| ||  |||||||||    
T  10386216 atccgaaatccgatatgatcctagcggtttttacaaaacaacatccgaatgcatccaaaa 10386157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13531395 - 13531320
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaaca 124  Q
    ||||||||||||||||||||| |||||||||| |  || ||||||| |||| |||  ||| ||||||| |||||||    
T  13531395 ttttgcggttcggtttggttcggttttgaaaaagtgattcgaaatctgatctgatattagtggtttttacaaaaca 13531320  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 33747949 - 33747876
Alignment:
Q  71 gttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 144  Q
    |||||||||| || |||||||||  ||||| ||| ||||| ||| | ||||||||| || ||||||||||||||    
T  33747949 gttttgaaaaagctatccgaaatatgatccaatcttagcgctttctacaaaacaacttctaaacacatccaaaa 33747876  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 16672122 - 16672014
Alignment:
Q  45 ttacttttgcggttcggtttggttcagtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaa-acacat 138  Q
    ||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  16672122 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcagtttttccaaaacaacatccaacacacat 16672023  T
Q  139 ccaaaaata 147  Q
    |||||||||    
T  16672022 ccaaaaata 16672014  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 21352338 - 21352410
Alignment:
Q  71 gttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  21352338 gttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 21352410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 22596175 - 22596081
Alignment:
Q  49 ttttgcggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||| |||||||  |||||||||| |  ||||||||||||||| |||| ||||| ||||| |||||||||||| |||  ||||||||    
T  22596175 ttttgcggttcgttttggtttggttttgaaaaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaacatcgaaatgcatccaaa 22596081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 18511614 - 18511559
Alignment:
Q  92 atccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||| || || ||||||||||| |||||||||||||||||||||||||||||||    
T  18511614 atccgaaccaattatagcggttttgccaaaacaacatccaaacacatccaaaaata 18511559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 42295822 - 42295910
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    ||||||||||||||||  ||||||||| |  |||||||| |||| |||||| |||| |||||| ||||||||||| ||||| ||||||||    
T  42295822 cggttcggtttggttcgattttgaaaa-gtgatccgaaagccgaaccgatcttagcagtttttacaaaacaacatacaaacgcatccaaa 42295910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 7753871 - 7753802
Alignment:
Q  71 gttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||| |  ||| ||||||||||||||||||||   ||||| |||||||||||| |||||||||||||    
T  7753871 gttttgaaaaagttatctgaaatccgatccgatcatag---tttttacaaaacaacatcaaaacacatccaaa 7753802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 10997292 - 10997254
Alignment:
Q  109 cggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  10997292 cggtttttacaaaacaacatccaaacacatccaaaaata 10997254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 34439928 - 34439851
Alignment:
Q  61 gtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacat 138  Q
    ||||||||| |||||||||| | |||||| |||||||||| ||  ||||||||||| ||||  ||||| |||||||||    
T  34439928 gtttggttcggttttgaaaaagtaatccggaatccgatccaattctagcggtttttacaaactaacattcaaacacat 34439851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 37282644 - 37282737
Alignment:
Q  45 ttacttttgcggttcggtttggttcagtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    ||||||||||||||||||||||||| |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37282644 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 37282737  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 32055882 - 32055975
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||| |||||||| |||||||||| |  ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  32055882 cggttcgatttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaata 32055975  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 19636560 - 19636638
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    |||| |||| ||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  19636560 ggtttggttcggttcggttttgaaaactcaatccgaaatccgatccgatcatcgcggcttttccaaaacaacatccaaa 19636638  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 25706397 - 25706303
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggt-ttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||||||||| |||||||||| |  ||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  25706397 cggttcggtttggttcggttttgaaaaggttatctgaagtccgaaccgatcatagcggtttttttcaaaacaacatccaaacacatccaaaaata 25706303  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 1030554 - 1030467
Alignment:
Q  56 gttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||||| |||| ||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  1030554 gttcggtttggttcggtttcgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 1030467  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 39717243 - 39717312
Alignment:
Q  64 tggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    |||||| ||||| |||| |  |||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  39717243 tggttcggttttcaaaaggtgatccaaaatccgaaccgatcatagcggtttttccaatacaacatccaaa 39717312  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 19997468 - 19997380
Alignment:
Q  56 gttcggtttggttcagttttgaaaacgcaatccgaaa-tccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 143  Q
    |||||||||||||| |||||||||| |  |||||||| |||||||||||| |||| |||||| | | |||||||| |||| ||||||||    
T  19997468 gttcggtttggttcggttttgaaaaagtgatccgaaaatccgatccgatcttagcagtttttacgagacaacatctaaacgcatccaaa 19997380  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 29283090 - 29283002
Alignment:
Q  54 cggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    |||||||||| |||||| |||||| || |  |||||||||||| |||     ||||||||||| ||||||||||||||||  ||||||||||||    
T  29283090 cggttcggttcggttcaattttgagaaagtgatccgaaatccgttcc-----tagcggtttttacaaaacaacatccaaatgcatccaaaaata 29283002  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 48085313 - 48085392
Alignment:
Q  59 cggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacat 138  Q
    ||||||||||| |||||||||| |  ||||||||||||||  |||   | || ||||| |||||||||||||||||||||    
T  48085313 cggtttggttcggttttgaaaaagtgatccgaaatccgatttgataccatcgctttttacaaaacaacatccaaacacat 48085392  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 40166829 - 40166883
Alignment:
Q  85 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 139  Q
    |||||| ||||||||  ||| ||||||||||| ||||||||||| ||||||||||    
T  40166829 atccgatatccgatcgaatcttagcggtttttacaaaacaacattcaaacacatc 40166883  T

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Target: scaffold0034 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 47798 - 47860
Alignment:
Q  85 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||    
T  47798 atccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaacacatccacaaata 47860  T

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Target: scaffold0717 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 5583 - 5492
Alignment:
Q  56 gttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 147  Q
    ||||||| |||||  |||||||||| |  |||  ||||||||||||||| ||||| || || ||||||||||||||| | ||||||||||||    
T  5583 gttcggtgtggtttggttttgaaaaagtgatcttaaatccgatccgatcctagcgattcttacaaaacaacatccaagcgcatccaaaaata 5492  T

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Target: scaffold0396 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 1278 - 1356
Alignment:
Q  55 ggttcggtttggttcagttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 133  Q
    ||||||||||  |||  ||||||||| |  |||||||||||||| ||||| ||||||| ||| |||||||| |||||||    
T  1278 ggttcggtttaattcgattttgaaaaagtgatccgaaatccgattcgatcttagcggtgtttacaaaacaatatccaaa 1356  T

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