View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1875_low_8 (Length: 294)
Name: NF1875_low_8
Description: NF1875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1875_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 5503584 - 5503308
Alignment:
| Q |
18 |
acagtttgctttagtggcaacccccttgggccggcccgatgttttaaatatcgtcacagattgttttatcacaatttgaaagaagaatcaaaaagtgcac |
117 |
Q |
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| T |
5503584 |
acagtttgctttagtggcaacccccttgggccggcccgatgttttaaatatcgtcacagattgttttatcacaatttgaaagaagaataaaaaactgcac |
5503485 |
T |
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| Q |
118 |
aactatattgaacaatattttaatagaacaagttctccagaattcaaacatttcttgattaaagaacatagtcctttgctctccattaaaaagatgaagt |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5503484 |
aactatattgaacaatattttactagaacaagttctccagaattcaaacatttcttgattaaagaacatagtcctttgctctacattaaaaagatgaagt |
5503385 |
T |
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| Q |
218 |
gcaaaacccaaaaagtataagagcacaatttattggaggtataacattaaatttaagagttcaacaatcagtaactc |
294 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5503384 |
gcaaaacccaaaaagtataagagcacaaattattggaggtataacattaaacttaagagttcaacaatcagtaactc |
5503308 |
T |
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