View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18760_high_3 (Length: 236)
Name: NF18760_high_3
Description: NF18760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18760_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13271040 - 13271260
Alignment:
| Q |
1 |
acatataaaagattcacattctctatgattgatctctgatggacatcagtatattcgctgaacatctcaaatcctcccatcatcatatagttgccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13271040 |
acatataaaagattcacattctctatgattgacctctgatggacatcagtatattcactcgacatctcaaatgctcccatcatcatatagttgccaaatt |
13271139 |
T |
|
| Q |
101 |
gttccaaaacatttccaccttcacttggtgtagcaagatgcaattcaagatattcttcaatttgctgcttattaacacttccaacattatcacttctttc |
200 |
Q |
| |
|
||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13271140 |
gttccaaaacaattccactttcagttggtgtagcaagattcaattcaagatattcttcaatttgctgcttattaacacttccaacattatcacttctttc |
13271239 |
T |
|
| Q |
201 |
aggtggcgatttcattttgta |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13271240 |
aggtggcgatttcattttgta |
13271260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University